Lag0031465 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031465
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ste24 endopeptidase
Location	chr11: 8834627 .. 8835540 (+)
RNA-Seq Expression	Lag0031465
Synteny	Lag0031465

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGCATCTGAATTCAGTGCCACTAGGGAGTCTGTCAGCATAAATTTGTCTGTGTCAAAGTCAGCACATAGTAGAACCCAATGGTTTCTATCTAGGTTGAAGAGCATGTAGACAGCATCAACCGAACTCCAAGAAACGCAGTAATCTGTGTGGTCTCCTATTACCTAGTTAGTGACCGTCTTGAATCTGCTCCAATCGAACGTGTCGTTCACATGGTCACTGTGAAGGAATGCTTAGCATGTACATCATTTAACAGATACATGGGCATGCCATAATGTGGAACTCAAGTATATTTCTATTTATTATCTCCATGTTTATTGTTCATCCCTTGTTTCTTATTGATGCTAATTGCTATCTATCGCATGACGTAACTTTCTATCACTTGAAATATTCAGGTTGTTTTGGCTCATGAATTGGGTCATCTAAAATGTGATCATGGTGTGTGGCTTACATTTGTGAATATTCTTACCCTGGGAGCTTACACTGCTCCGGGTAAGTATTTAAATGACGCTCTGATTAGCATAAGATAATTATTAGGGCTAATTTTGTTAAGCGATCCTTTTGGAGAATGGAGTAGTGACCATTAAGTATTAATGCAACATTCTAATTCTGAAAGACAAAGTTATGAGGGCATTATTGCTGTGCATATAAGAATTTTTAGCATATCATTTTGCTCCATGGCTACCACGAACATGATATGATATTTAAACGGAAAAAGAAAATCAGGGAATATGTAGGCCTCAGGCTAAAAGTTTTTAAGTAATATACCCAAATTTCATTAGTCTCCTTTTATAGGGCCTGGGGGATTTTTAGCTCAGAACTTGGAAGAACAATTATTCCATTGGCTTCGAGCTGCAGAGCTAAATTGTGATCGTGCTACCCGCTGCCCTTCTTGTTGCTCAGGATTCTAA

mRNA sequence

ATGTTTGCATCTGAATTCAGTGCCACTAGGGAGTCTGTTGTTTTGGCTCATGAATTGGGTCATCTAAAATGTGATCATGGTGTGTGGCTTACATTTGTGAATATTCTTACCCTGGGAGCTTACACTGCTCCGGGGCCTGGGGGATTTTTAGCTCAGAACTTGGAAGAACAATTATTCCATTGGCTTCGAGCTGCAGAGCTAAATTGTGATCGTGCTACCCGCTGCCCTTCTTGTTGCTCAGGATTCTAA

Coding sequence (CDS)

ATGTTTGCATCTGAATTCAGTGCCACTAGGGAGTCTGTTGTTTTGGCTCATGAATTGGGTCATCTAAAATGTGATCATGGTGTGTGGCTTACATTTGTGAATATTCTTACCCTGGGAGCTTACACTGCTCCGGGGCCTGGGGGATTTTTAGCTCAGAACTTGGAAGAACAATTATTCCATTGGCTTCGAGCTGCAGAGCTAAATTGTGATCGTGCTACCCGCTGCCCTTCTTGTTGCTCAGGATTCTAA

Protein sequence

MFASEFSATRESVVLAHELGHLKCDHGVWLTFVNILTLGAYTAPGPGGFLAQNLEEQLFHWLRAAELNCDRATRCPSCCSGF

Homology

[Close]

BLAST of Lag0031465 vs. NCBI nr
Match: XP_022935369.1 (uncharacterized protein LOC111442272 isoform X3 [Cucurbita moschata])

HSP 1 Score: 120.2 bits (300), Expect = 8.5e-24
Identity = 54/59 (91.53%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 14  VLAHELGHLKCDHGVWLTFVNILTLGAYTAPGPGGFLAQNLEEQLFHWLRAAELNCDRA 73
           VLAHELGHLKCDHGVWLTF NILTLGAYT PG GGFLAQNLEEQLF WLRAAEL CDRA
Sbjct: 102 VLAHELGHLKCDHGVWLTFANILTLGAYTVPGLGGFLAQNLEEQLFRWLRAAELTCDRA 160

[Close]

BLAST of Lag0031465 vs. NCBI nr
Match: XP_022935362.1 (uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata] >XP_022935363.1 uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata] >XP_022935364.1 uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata] >XP_022935365.1 uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata] >XP_022935366.1 uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata])

HSP 1 Score: 120.2 bits (300), Expect = 8.5e-24
Identity = 54/59 (91.53%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 14  VLAHELGHLKCDHGVWLTFVNILTLGAYTAPGPGGFLAQNLEEQLFHWLRAAELNCDRA 73
           VLAHELGHLKCDHGVWLTF NILTLGAYT PG GGFLAQNLEEQLF WLRAAEL CDRA
Sbjct: 174 VLAHELGHLKCDHGVWLTFANILTLGAYTVPGLGGFLAQNLEEQLFRWLRAAELTCDRA 232

[Close]

BLAST of Lag0031465 vs. NCBI nr
Match: XP_023527537.1 (uncharacterized protein LOC111790739 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.2 bits (300), Expect = 8.5e-24
Identity = 54/59 (91.53%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 14  VLAHELGHLKCDHGVWLTFVNILTLGAYTAPGPGGFLAQNLEEQLFHWLRAAELNCDRA 73
           VLAHELGHLKCDHGVWLTF NILTLGAYT PG GGFLAQNLEEQLF WLRAAEL CDRA
Sbjct: 170 VLAHELGHLKCDHGVWLTFANILTLGAYTVPGLGGFLAQNLEEQLFRWLRAAELTCDRA 228

[Close]

BLAST of Lag0031465 vs. NCBI nr
Match: KAG7017826.1 (htpX2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.2 bits (300), Expect = 8.5e-24
Identity = 54/59 (91.53%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 14  VLAHELGHLKCDHGVWLTFVNILTLGAYTAPGPGGFLAQNLEEQLFHWLRAAELNCDRA 73
           VLAHELGHLKCDHGVWLTF NILTLGAYT PG GGFLAQNLEEQLF WLRAAEL CDRA
Sbjct: 174 VLAHELGHLKCDHGVWLTFANILTLGAYTVPGLGGFLAQNLEEQLFRWLRAAELTCDRA 232

[Close]

BLAST of Lag0031465 vs. NCBI nr
Match: XP_022935367.1 (uncharacterized protein LOC111442272 isoform X2 [Cucurbita moschata])

HSP 1 Score: 120.2 bits (300), Expect = 8.5e-24
Identity = 54/59 (91.53%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 14  VLAHELGHLKCDHGVWLTFVNILTLGAYTAPGPGGFLAQNLEEQLFHWLRAAELNCDRA 73
           VLAHELGHLKCDHGVWLTF NILTLGAYT PG GGFLAQNLEEQLF WLRAAEL CDRA
Sbjct: 174 VLAHELGHLKCDHGVWLTFANILTLGAYTVPGLGGFLAQNLEEQLFRWLRAAELTCDRA 232

The following BLAST results are available for this feature:

BLAST of Lag0031465 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935369.1	8.5e-24	91.53	uncharacterized protein LOC111442272 isoform X3 [Cucurbita moschata]	[more]
XP_022935362.1	8.5e-24	91.53	uncharacterized protein LOC111442272 isoform X1 [Cucurbita moschata] >XP_0229353...	[more]
XP_023527537.1	8.5e-24	91.53	uncharacterized protein LOC111790739 [Cucurbita pepo subsp. pepo]	[more]
KAG7017826.1	8.5e-24	91.53	htpX2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022935367.1	8.5e-24	91.53	uncharacterized protein LOC111442272 isoform X2 [Cucurbita moschata]	[more]

BLAST of Lag0031465 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.2010.10	Metalloproteases ("zincins"), catalytic domain	coord: 3..34 e-value: 5.1E-5 score: 25.2
None	No IPR available	PANTHER	PTHR10120:SF26	OS01G0970700 PROTEIN	coord: 13..73
IPR027057	CAAX prenyl protease 1	PANTHER	PTHR10120	CAAX PRENYL PROTEASE 1	coord: 13..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031465.1	Lag0031465.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071586	CAAX-box protein processing
biological_process	GO:1900055	regulation of leaf senescence
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0008233	peptidase activity