Lag0031452 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031452
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr11: 8705048 .. 8707270 (-)
RNA-Seq ExpressionLag0031452
SyntenyLag0031452
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGGCCTCGGCCTTGGCATGAGGCTGAGCATTTCTTCTGCTTTGCTTGCTAATTTGCTCTGTTGTATCCATCTCGAGGGTGCGTACACTCAGTCGGGGAAAACTTGGGGAGGTCGAGGAAATACTAGAGCCTCTCTTCAAGTATTGTATTCATCCCAGGGGTGCGTGCACTCTTTTGGGCAAAACTTGGGGAGGTTGAGGGCATGTGTCAACCTCTCTGCAAGAGTTTAGTCTCTTTCCACGGGAAAGTGCGGAAGTTTGGCCTCTACAAGAATCATTCATGTCTAGCCATGTGCACCAATCCTATAGAAAAATGCTTTTGCACAAACACAGTATAAAGAACTTTATCTAATTTGCAAGTGTTTGCATTATACCATGGGGAGAAGCTATAGACATGTGTTATACAAAATGAGAATAAATAATCTTAAAAATAGTTCCACCGTTGTTCATAACGTAATCCTAACATGGCCATGATCATGGACTCGGTTTGTCCTCATTCCCAACCCCTCACTCAAAATATGTATTTATACATTTTTTTAGTAAGGATAAACTAACTTCGTACCTAGGCTTTCGCGGCTAAATTTTGGACTTGGCCTCTAGGTGGTCAGCCTCGGCCTTGGCATGAGGCCGAGCAGCTTCCTTATGCTATCTGCTCGCTCCGTAGTTGGGCTTATTGTGCAGACTCACCTTCTACTTGAACATTTCTTTGCTGCCTTGGATATTTTGGTTGTGCCAGTCGAGCCTCACTGCAAGCCCTCACAGTCGTCTTGAGGGCTAAAATGCTCGGCCTCGGCCTTGGCGTGAGGCCGGGCATTTTTCCTACATTGCTTGTTATTTTGCTCCTCATGCTGCTGTATTCATCCCATGGGTGCGTACACTCTCCGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGCCTCTCCTCAAGCTACATAGTCATCCCAGGGGTGTGTACACTCTTCTGGGGAAAACTTGGGGAGGCCTAGGAAGTTCTCGTGCCTCTCTTCAAGCTACATAGTCATCCCGGGGTGCGTACACTCTTCTGGGAAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTCTTCAAGCTGCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAATGCTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTTTCAAGCTGCATGGTCATCCCAAGGGTGCGTACACTCTTCTGGGGAAATGCTTGGGGAGGCCCAGGAATTTCCCAAGCCTCTCTTCAAGCGTGGTGCTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTATGAAGTTCCCGAGCCTCTCTTCAAGCTGCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCGAGCCTCTCTTCAAGCAGCATGGTCATCCCAGGGGCGCGTACTCTCTTCTGGGGAAATGCTTGGGGAGGCCCAAGAATTTCCAAGTCTCTCTTCAAGCGTTGTATTCCCCCGAGGGTGCGTACACTCAGTCGGGGAACAAAGTATGCTTAAACTGTCTTCGATCACATTTCCACACAACTTTGATGGCATATAAAGCAACAAAGTATTTCAAAAGCTTGAAAATAGCCAGACAACAATTATTGCAATATAACTAACGACCATGATTATTCTCAGTCCCCCCACTCAAAAATGTGTATTCAAAAGGTAAAACATGCATTTTTTGAGTAAGGAAAGACTTACATCGTGACCGGGCTCTTGAAGGTGCTGATCGACCTTAGCCTCTAGGTGGTCGGCTCCGGCCTTGGCATGAGGCCGACCAACTCCTCTGTGTCATCTGCGTGCTCAGTCCGTGACTCGACTTATGTGTAGAGCATCTCCCTTTTGGCTCGAATCGCTTCAGCTACGATAAAAGGTCAAGTGTTGTGGTCTTCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGAGGAGGCTTGGGATTTTCCCGGACCCCTCTTCAAGTTGCTGTGTTCATCCCAGGGGTGCGTACACTCTCCTGGGGAAAACCTAGGGAGACCTAGGAAGTTCCCGGGCCTCTCTTCAAGCAGCTGTAAACTTCTTGCCCTTTGGGCTCTCGCTGTGCCTCTCGAATGGCGACCTTTCGCTCCCTGCCTGACTGTCCACCGGATGGTCCTCCTAAAATTGTTCGTATCTCGAGCGGTGGGTTGA

mRNA sequence

ATGCTCGGCCTCGGCCTTGGCATGAGGCTGAGCATTTCTTCTGCTTTGCTTGCTAATTTGCTCTGTTGTATCCATCTCGAGGGTGCGTACACTCAGTCGGGGAAAACTTGGGGAGGTCGAGGAAATACTAGAGCCTCTCTTCAAGTATTGTATTCATCCCAGGGTCGAGCCTCACTGCAAGCCCTCACAGTCGTCTTGAGGGCTAAAATGCTCGGCCTCGGCCTTGGCGTGAGGCCGGGCATTTTTCCTACATTGCTTGTTATTTTGCTCCTCATGCTGCTGTATTCATCCCATGGGTGCGTACACTCTCCGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGCCTCTCCTCAAGCTACATAGTCATCCCAGGGGAAGTTCCCGAGCCTCTCTTCAAGCTGCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAATGCTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTTTCAAGCTGCATGGTCATCCCAAGGGTGCGTACACTCTTCTGGGGAAATGCTTGGGGAGGCCCAGGAATTTCCCAAGCCTCTCTTCAAGCGTGGTGCTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTATGAAGTTCCCGAGCCTCTCTTCAAGCTGCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCGAGCCTCTCTTCAAGCAGCATGGTCATCCCAGGGGCGCGTACTCTCTTCTGGGGAAATGCTTGGGGAGGCCCAAGAATTTCCAAGTCTCTCTTCAAGCGTTGTATTCCCCCGAGGAGCATCTCCCTTTTGGCTCGAATCGCTTCAGCTACGATAAAAGGTCAAGTGTTGTGGTCTTCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGAGGAGGCTTGGGATTTTCCCGGACCCCTCTTCAAGTTGCTGTGTTCATCCCAGGGGTGCGTACACTCTCCTGGGGAAAACCTAGGGAGACCTAGGAAGTTCCCGGGCCTCTCTTCAAGCAGCTGTAAACTTCTTGCCCTTTGGGCTCTCGCTGTGCCTCTCGAATGGCGACCTTTCGCTCCCTGCCTGACTGTCCACCGGATGGTCCTCCTAAAATTGTTCGTATCTCGAGCGGTGGGTTGA

Coding sequence (CDS)

ATGCTCGGCCTCGGCCTTGGCATGAGGCTGAGCATTTCTTCTGCTTTGCTTGCTAATTTGCTCTGTTGTATCCATCTCGAGGGTGCGTACACTCAGTCGGGGAAAACTTGGGGAGGTCGAGGAAATACTAGAGCCTCTCTTCAAGTATTGTATTCATCCCAGGGTCGAGCCTCACTGCAAGCCCTCACAGTCGTCTTGAGGGCTAAAATGCTCGGCCTCGGCCTTGGCGTGAGGCCGGGCATTTTTCCTACATTGCTTGTTATTTTGCTCCTCATGCTGCTGTATTCATCCCATGGGTGCGTACACTCTCCGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGCCTCTCCTCAAGCTACATAGTCATCCCAGGGGAAGTTCCCGAGCCTCTCTTCAAGCTGCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAATGCTTGGGGAGGCCTAGGAAGTTCCCGAGCCTCTTTCAAGCTGCATGGTCATCCCAAGGGTGCGTACACTCTTCTGGGGAAATGCTTGGGGAGGCCCAGGAATTTCCCAAGCCTCTCTTCAAGCGTGGTGCTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAAGCTTGGGGAGGCCTATGAAGTTCCCGAGCCTCTCTTCAAGCTGCATGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAATTTCCCGAGCCTCTCTTCAAGCAGCATGGTCATCCCAGGGGCGCGTACTCTCTTCTGGGGAAATGCTTGGGGAGGCCCAAGAATTTCCAAGTCTCTCTTCAAGCGTTGTATTCCCCCGAGGAGCATCTCCCTTTTGGCTCGAATCGCTTCAGCTACGATAAAAGGTCAAGTGTTGTGGTCTTCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGAGGAGGCTTGGGATTTTCCCGGACCCCTCTTCAAGTTGCTGTGTTCATCCCAGGGGTGCGTACACTCTCCTGGGGAAAACCTAGGGAGACCTAGGAAGTTCCCGGGCCTCTCTTCAAGCAGCTGTAAACTTCTTGCCCTTTGGGCTCTCGCTGTGCCTCTCGAATGGCGACCTTTCGCTCCCTGCCTGACTGTCCACCGGATGGTCCTCCTAAAATTGTTCGTATCTCGAGCGGTGGGTTGA

Protein sequence

MLGLGLGMRLSISSALLANLLCCIHLEGAYTQSGKTWGGRGNTRASLQVLYSSQGRASLQALTVVLRAKMLGLGLGVRPGIFPTLLVILLLMLLYSSHGCVHSPGKSLGRPRKFSGLSSSYIVIPGEVPEPLFKLHGHPRGAYTLLGKCLGRPRKFPSLFQAAWSSQGCVHSSGEMLGEAQEFPKPLFKRGAHPRGAYTLLGKKLGEAYEVPEPLFKLHGHPRGAYTLLGKSLGRPRNFPSLSSSSMVIPGARTLFWGNAWGGPRISKSLFKRCIPPRSISLLARIASATIKGQVLWSSQGCVHSSGEKLEEAWDFPGPLFKLLCSSQGCVHSPGENLGRPRKFPGLSSSSCKLLALWALAVPLEWRPFAPCLTVHRMVLLKLFVSRAVG
Homology
[Close]
BLAST of Lag0031452 vs. NCBI nr
Match: XP_034811544.1 (LOW QUALITY PROTEIN: activated CDC42 kinase 1 [Pan paniscus])

HSP 1 Score: 62.8 bits (151), Expect = 7.7e-06
Identity = 57/192 (29.69%), Postives = 78/192 (40.62%), Query Frame = 0 

Query: 126 GEVPEPLFKLHGHPRGAYTLLGKCLGRPRKFPSLFQAAWSSQGCVHSSGEMLGEAQEFPK 185
           GE+  P      HP G+++ LG C+G P    S  + AW+      S GE+L        
Sbjct: 39  GELLVPRSVRGRHPEGSFSCLGVCVGHPEGSFSCLERAWAP-----SRGELL-------V 98

Query: 186 PLFKRGAHPRGAYTLLGKKLGEAYEVPEPLFKLHG----HPRGAYTLLGKSLGR-PRNFP 245
           P   RG HP G+++ LG  LG    +P    +  G    HP G+++ LG  +G  PR   
Sbjct: 99  PRGVRGRHPEGSFSCLGVCLG---AIPRGASRASGVRGRHPEGSFSCLGVCVGAIPRGAS 158

Query: 246 SLSSSSMVIPGARTLFWGNAWGGPRISKSLFKRCIP--PRSISLLARIASATIKGQVLWS 305
             S  +   P       G   G  R S S    C+   PR  S  +  A A  +G    S
Sbjct: 159 RASECAWAHPEGSFSCLGVCVGPSRGSFSCLGVCVGAIPRGASRASECAWAIPRGASRAS 215

Query: 306 SQGCVHSSGEKL 311
                 S GE L
Sbjct: 219 GCAWAPSRGELL 215

The following BLAST results are available for this feature:
BLAST of Lag0031452 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_034811544.17.7e-0629.69LOW QUALITY PROTEIN: activated CDC42 kinase 1 [Pan paniscus][more]
BLAST of Lag0031452 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0031452 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0031452 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031452.1Lag0031452.1mRNA