Lag0031451 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031451
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr11: 8691493 .. 8692721 (-)
RNA-Seq Expression	Lag0031451
Synteny	Lag0031451

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACGCAGGTGCACCCACTGGGCGTCTCCTGCCCCTGCGTGCATGCGTGCGCACGCATGGGCTGCTGCCTGCGTGCAGCAGCGCTCATGCTGCTTGTACGTGCTGGCCCTGCTACCAGCATGCATGGGCATGCTAGTGCATGTCTTCGGTGTGCCTTCTTTGCACCTGATTGTTGTCCCACGTGCCCACATCACTTCGCATGTCTTCCGCCACACTTATATTACTCAGTGGCTCATTGGGTCACCTTGGCCCGCCCATGGACGTGTCATCCACGCACCGAACACCATGCCAACCTCCTAGCACATTTATGGGCCACCTGCCCCCGTTGTGTTCCATCTGCCATGCAACCATCTAGCCATCCACGCACTAAGCATCGTGCTAACCTCTTAGCACGTTGTATGGGCCTTCTAGCCATGTTGAACTCTTGATGTGCTACTAGCCTTCTGTCAGCCTCCGTGCGCATCTCATGGCCTTGTCATGGCCTCCTGCCACGCTATGTCATCTCACCATGTGTTCTGTCTGTCCCGCATTCCTCCAACACCGTGAGAACATGTTTGTGGCTAATCTCTCTCAGCCACGAGGGTGCCACCTACGCACTCATCTTGGCCCACGTGGCCAAGCCGTGTGCTTCGAGACTTAAGGGTGTAACACCTTGCCATGGTGCTCGATATTGTTTCAATCGGTTGAATTTGTCTTATTAAGGAAGACATCCTCCATCCAAACTTATTTTAATGGTTGTTGCTAATGATTCTTCTTCCACTGCTTCTACCTGGCTTGTTGATAATGGATGCAATATTCATGTCCCTTTAGATGCTTCTAATTTGGCATTGAATTCCAATTACAATGGAGAAGAGGCTATTAAGTTGCAAATTTTCAAGCTCTTCCTGTTGTTCAGGTTGGTTTTGGTACTCTCTCAGCTACTCATAATGATTTTCGTCTGTCCAACTTGTTTTGTGTTTCTGACTTGTCAACAAATCTCTTATCTATCTCACAATGTTGCATCGATAATAATTGCATCTTTTTTTATGCTAATTGGTTTTCTATTCAGGACAAGGTCTCGAAATAAGTTTCTATATAAGGGCAAATATAAGGATGGTTTATATGCTATTTCGGTTGTTGTTAATACTTTGAACTCGACTTCTAGTTTGTCTAATATTTCTAATTTACACTATGTTCCTGTTTGTGCCTCTACTACTGTGTCTCATGCTTCTTTGACTAATTTGTGA

mRNA sequence

ATGGCACGCAGGTGCACCCACTGGGCGTCTCCTGCCCCTGCGTGCATGCGTGCGCACGCATGGGCTGCTGCCTGCGTGCAGCAGCGCTCATGCTGCTTGTACGTGCTGGCCCTGCTACCAGCATGCATGGGCATGCTAGTGCATGTCTTCGGTGTGCCTTCTTTGCACCTGATTGTTGTCCCACGTGCCCACATCACTTCGCATGTCTTCCGCCACACTTATATTACTCAGTGGCTCATTGGCCTTCTGTCAGCCTCCGTGCGCATCTCATGGCCTTGTCATGGCCTCCTGCCACGCTATGTCATCTCACCATGTGTTCTGTCTGTCCCGCATTCCTCCAACACCGTGAGAACATGTTTGTGGCTAATCTCTCTCAGCCACGAGGGTGCCACCTACGCACTCATCTTGGCCCACGTGGCCAAGCCGTGTGCTTCGAGACTTAAGGGTGTAACACCTTGCCATGGAAGACATCCTCCATCCAAACTTATTTTAATGGTTGTTGCTAATGATTCTTCTTCCACTGCTTCTACCTGGCTTGTTGATAATGGATGCAATATTCATGTCCCTTTAGATGCTTCTAATTTGGCATTGAATTCCAATTACAATGGAGAAGAGGCTATTAAGTTGCAAATTTTCAAGCTCTTCCTGTTGTTCAGGACAAGGTCTCGAAATAAGTTTCTATATAAGGGCAAATATAAGGATGGTTTATATGCTATTTCGGTTGTTGTTAATACTTTGAACTCGACTTCTAGTTTGTCTAATATTTCTAATTTACACTATGTTCCTGTTTGTGCCTCTACTACTGTGTCTCATGCTTCTTTGACTAATTTGTGA

Coding sequence (CDS)

ATGGCACGCAGGTGCACCCACTGGGCGTCTCCTGCCCCTGCGTGCATGCGTGCGCACGCATGGGCTGCTGCCTGCGTGCAGCAGCGCTCATGCTGCTTGTACGTGCTGGCCCTGCTACCAGCATGCATGGGCATGCTAGTGCATGTCTTCGGTGTGCCTTCTTTGCACCTGATTGTTGTCCCACGTGCCCACATCACTTCGCATGTCTTCCGCCACACTTATATTACTCAGTGGCTCATTGGCCTTCTGTCAGCCTCCGTGCGCATCTCATGGCCTTGTCATGGCCTCCTGCCACGCTATGTCATCTCACCATGTGTTCTGTCTGTCCCGCATTCCTCCAACACCGTGAGAACATGTTTGTGGCTAATCTCTCTCAGCCACGAGGGTGCCACCTACGCACTCATCTTGGCCCACGTGGCCAAGCCGTGTGCTTCGAGACTTAAGGGTGTAACACCTTGCCATGGAAGACATCCTCCATCCAAACTTATTTTAATGGTTGTTGCTAATGATTCTTCTTCCACTGCTTCTACCTGGCTTGTTGATAATGGATGCAATATTCATGTCCCTTTAGATGCTTCTAATTTGGCATTGAATTCCAATTACAATGGAGAAGAGGCTATTAAGTTGCAAATTTTCAAGCTCTTCCTGTTGTTCAGGACAAGGTCTCGAAATAAGTTTCTATATAAGGGCAAATATAAGGATGGTTTATATGCTATTTCGGTTGTTGTTAATACTTTGAACTCGACTTCTAGTTTGTCTAATATTTCTAATTTACACTATGTTCCTGTTTGTGCCTCTACTACTGTGTCTCATGCTTCTTTGACTAATTTGTGA

Protein sequence

MARRCTHWASPAPACMRAHAWAAACVQQRSCCLYVLALLPACMGMLVHVFGVPSLHLIVVPRAHITSHVFRHTYITQWLIGLLSASVRISWPCHGLLPRYVISPCVLSVPHSSNTVRTCLWLISLSHEGATYALILAHVAKPCASRLKGVTPCHGRHPPSKLILMVVANDSSSTASTWLVDNGCNIHVPLDASNLALNSNYNGEEAIKLQIFKLFLLFRTRSRNKFLYKGKYKDGLYAISVVVNTLNSTSSLSNISNLHYVPVCASTTVSHASLTNL

Homology

[Close]

BLAST of Lag0031451 vs. NCBI nr
Match: XP_022150845.1 (uncharacterized protein LOC111018892 [Momordica charantia])

HSP 1 Score: 57.0 bits (136), Expect = 3.0e-04
Identity = 33/83 (39.76%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 136 LAHVAKPCASRLKGVTPCHGRHPPSKLILMVVANDSS------STASTWLVDNGCNIHVP 195
           L H A  C +R+       GRHPP +L  MV   ++S      S+ +TWL D+ CN H+ 
Sbjct: 332 LGHTALDCYNRMN--FHFQGRHPPPQLAAMVAVQNNSYLAVGNSSPTTWLADSECNTHMT 391

Query: 196 LDASNL---ALNSNYNGEEAIKL 210
            D SNL   ++ S+YNGEE I +
Sbjct: 392 ADLSNLSIASIASDYNGEENISV 412

[Close]

BLAST of Lag0031451 vs. ExPASy TrEMBL
Match: A0A6J1D9L6 (uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018892 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-04
Identity = 33/83 (39.76%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 136 LAHVAKPCASRLKGVTPCHGRHPPSKLILMVVANDSS------STASTWLVDNGCNIHVP 195
           L H A  C +R+       GRHPP +L  MV   ++S      S+ +TWL D+ CN H+ 
Sbjct: 332 LGHTALDCYNRMN--FHFQGRHPPPQLAAMVAVQNNSYLAVGNSSPTTWLADSECNTHMT 391

Query: 196 LDASNL---ALNSNYNGEEAIKL 210
            D SNL   ++ S+YNGEE I +
Sbjct: 392 ADLSNLSIASIASDYNGEENISV 412

[Close]

BLAST of Lag0031451 vs. ExPASy TrEMBL
Match: A0A5D3BPY5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00830 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.5e-04
Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 155 GRHPPSKLILMVVAN-----DSSSTASTWLVDNGCNIHVPLDASNLALNSNYNGEEAI 208
           G HPPS+L  MVV +        +T + W  D+GCN+H+  + +NL L++NYNG+E +
Sbjct: 7   GCHPPSQLATMVVNSMHSQASGENTNNVWFSDSGCNVHMTYELTNLNLSNNYNGDEIV 64

[Close]

BLAST of Lag0031451 vs. ExPASy TrEMBL
Match: A0A438KJ28 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1729 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.4e-04
Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 138 HVAKPCASRLKGVTPCHGRHPPSKLILMVV-ANDSSSTASTWLVDNGCNIHVPLDASNLA 197
           H A  C +R+       GRHPP +L+ MVV AN +      W VD+G NIHV  D  NLA
Sbjct: 327 HQALDCYNRMN--YAFQGRHPPIELVAMVVEANTTYLNQHQWYVDSGANIHVTSDTVNLA 386

Query: 198 LNSNYNGEEAI 208
           ++  Y G + +
Sbjct: 387 ISQPYEGTDTV 395

[Close]

BLAST of Lag0031451 vs. ExPASy TrEMBL
Match: A5BNV2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_013124 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.4e-04
Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 138 HVAKPCASRLKGVTPCHGRHPPSKLILMVV-ANDSSSTASTWLVDNGCNIHVPLDASNLA 197
           H A  C +R+       GRHPP +L+ MVV AN +      W VD+G NIHV  D  NLA
Sbjct: 296 HQALDCYNRMN--YAFQGRHPPIELVAMVVEANTTYLNQHQWYVDSGANIHVTSDTVNLA 355

Query: 198 LNSNYNGEEAI 208
           ++  Y G + +
Sbjct: 356 ISQPYEGTDTV 364

The following BLAST results are available for this feature:

BLAST of Lag0031451 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150845.1	3.0e-04	39.76	uncharacterized protein LOC111018892 [Momordica charantia]	[more]

BLAST of Lag0031451 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0031451 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D9L6	1.5e-04	39.76	uncharacterized protein LOC111018892 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A5D3BPY5	5.5e-04	41.38	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A438KJ28	9.4e-04	40.85	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A5BNV2	9.4e-04	40.85	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_013124 PE=4 SV=1	[more]

BLAST of Lag0031451 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031451.1	Lag0031451.1	mRNA