Lag0031444 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031444
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Phosphatidyl-N-methylethanolamine N-methyltransferase
Location	chr11: 8575451 .. 8575756 (+)
RNA-Seq Expression	Lag0031444
Synteny	Lag0031444

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGTTTTGGCAGTAATTGGAGTGTTGTTTCCGTTTCCGTACTACTACGTGTTATGGAATCGCCCACAGTTGTGGGTGAACTTGTGCGGTTGGCGCGAGCCCTACAAATTGAAGGCTCAGGTCTCGATTTTCCTCAAGTTGCTTAAGTTCCTCTCCATCCTCCATGTCTCCTCCTTCTCATGGCTGCCACCTCTCTACTTCTGGCCTCTCATGGCCTTTGGGCAGTTCTTGAACTTTCAGGTCTGCCTCTATCTCTCTGATGTGCTGAATTCTGCTTTTGATGTAGTTGCTTATTTACCATGA

mRNA sequence

ATGGGCGTTTTGGCAGTAATTGGAGTGTTGTTTCCGTTTCCGTACTACTACGTGTTATGGAATCGCCCACAGTTGTGGGTGAACTTGTGCGGTTGGCGCGAGCCCTACAAATTGAAGGCTCAGGTCTCGATTTTCCTCAAGTTGCTTAAGTTCCTCTCCATCCTCCATGTCTCCTCCTTCTCATGGCTGCCACCTCTCTACTTCTGGCCTCTCATGGCCTTTGGGCAGTTCTTGAACTTTCAGGTCTGCCTCTATCTCTCTGATGTGCTGAATTCTGCTTTTGATGTAGTTGCTTATTTACCATGA

Coding sequence (CDS)

ATGGGCGTTTTGGCAGTAATTGGAGTGTTGTTTCCGTTTCCGTACTACTACGTGTTATGGAATCGCCCACAGTTGTGGGTGAACTTGTGCGGTTGGCGCGAGCCCTACAAATTGAAGGCTCAGGTCTCGATTTTCCTCAAGTTGCTTAAGTTCCTCTCCATCCTCCATGTCTCCTCCTTCTCATGGCTGCCACCTCTCTACTTCTGGCCTCTCATGGCCTTTGGGCAGTTCTTGAACTTTCAGGTCTGCCTCTATCTCTCTGATGTGCTGAATTCTGCTTTTGATGTAGTTGCTTATTTACCATGA

Protein sequence

MGVLAVIGVLFPFPYYYVLWNRPQLWVNLCGWREPYKLKAQVSIFLKLLKFLSILHVSSFSWLPPLYFWPLMAFGQFLNFQVCLYLSDVLNSAFDVVAYLP

Homology

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BLAST of Lag0031444 vs. NCBI nr
Match: KAA0037706.1 (phosphatidyl-N-methylethanolamine N-methyltransferase [Cucumis melo var. makuwa] >TYK27017.1 phosphatidyl-N-methylethanolamine N-methyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 9.2e-36
Identity = 83/102 (81.37%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 1   MGVLAVIGVLFPFPYYYVLWNRPQLWVNLCG-WREPYKLKAQVSIFLKLLKFLSILHVSS 60
           MG+LAVIGVL PFPYYYVLWNRPQLWVNLCG  REP KL AQVS+FLKLL+FLSI+HVSS
Sbjct: 30  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 89

Query: 61  FSWLPPLYFWPLMAFGQFLNFQ-VCLYLSDVLNSAFDVVAYL 101
           FSW PPLYFWPLMAFGQFLNF+ + L LSDVL  A  VVAYL
Sbjct: 90  FSWPPPLYFWPLMAFGQFLNFRSLSLSLSDVLKFASSVVAYL 131

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BLAST of Lag0031444 vs. NCBI nr
Match: XP_008465151.2 (PREDICTED: phosphatidyl-N-methylethanolamine N-methyltransferase [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 2.1e-32
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MGVLAVIGVLFPFPYYYVLWNRPQLWVNLCG-WREPYKLKAQVSIFLKLLKFLSILHVSS 60
          MG+LAVIGVL PFPYYYVLWNRPQLWVNLCG  REP KL AQVS+FLKLL+FLSI+HVSS
Sbjct: 1  MGILAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 60

Query: 61 FSWLPPLYFWPLMAFGQFLNFQVCLYLSD 89
          FSW PPLYFWPLMAFGQFLNF+V   L +
Sbjct: 61 FSWPPPLYFWPLMAFGQFLNFRVYQLLGE 89

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BLAST of Lag0031444 vs. NCBI nr
Match: KAG7036543.1 (Phosphatidyl-N-methylethanolamine N-methyltransferase [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 147.5 bits (371), Expect = 6.1e-32
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1  MGVLAVIGVLFPFPYYYVLWNRPQLWVNLCG-WREPYKLKAQVSIFLKLLKFLSILHVSS 60
          M VLAVIGVL PFPYYYVLW RPQLWVNLCG W EP KL AQVS+FLKLL+FLSILHVSS
Sbjct: 1  MDVLAVIGVLLPFPYYYVLWTRPQLWVNLCGKWCEPSKLMAQVSVFLKLLQFLSILHVSS 60

Query: 61 FSWLPPLYFWPLMAFGQFLNFQVCLYLSD 89
          FSW PPLYFWPLMAFGQFLNF+V   L +
Sbjct: 61 FSWPPPLYFWPLMAFGQFLNFRVYQLLGE 89

[Close]

BLAST of Lag0031444 vs. NCBI nr
Match: XP_004137657.1 (phosphatidyl-N-methylethanolamine N-methyltransferase [Cucumis sativus] >KAE8650956.1 hypothetical protein Csa_002414 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 6.1e-32
Identity = 72/89 (80.90%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1  MGVLAVIGVLFPFPYYYVLWNRPQLWVNLCG-WREPYKLKAQVSIFLKLLKFLSILHVSS 60
          MG+ AVIGVL PFPYYYVLWNRPQLWVNLCG  REP KL AQVS+FLKLL+FLSI+HVSS
Sbjct: 1  MGIFAVIGVLLPFPYYYVLWNRPQLWVNLCGKSREPCKLMAQVSVFLKLLQFLSIIHVSS 60

Query: 61 FSWLPPLYFWPLMAFGQFLNFQVCLYLSD 89
          FSW PPLYFWPLMAFGQFLNF+V   L +
Sbjct: 61 FSWPPPLYFWPLMAFGQFLNFRVYQLLGE 89

[Close]

BLAST of Lag0031444 vs. NCBI nr
Match: XP_023523751.1 (phosphatidyl-N-methylethanolamine N-methyltransferase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.5 bits (371), Expect = 6.1e-32
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1  MGVLAVIGVLFPFPYYYVLWNRPQLWVNLCG-WREPYKLKAQVSIFLKLLKFLSILHVSS 60
          M VLAVIGVL PFPYYYVLW RPQLWVNLCG W EP KL AQVS+FLKLL+FLSILHVSS
Sbjct: 1  MDVLAVIGVLLPFPYYYVLWTRPQLWVNLCGKWCEPSKLMAQVSVFLKLLQFLSILHVSS 60

Query: 61 FSWLPPLYFWPLMAFGQFLNFQVCLYLSD 89
          FSW PPLYFWPLMAFGQFLNF+V   L +
Sbjct: 61 FSWPPPLYFWPLMAFGQFLNFRVYQLLGE 89

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BLAST of Lag0031444 vs. ExPASy Swiss-Prot
Match: Q9SAH5 (Phosphatidyl-N-methylethanolamine N-methyltransferase OS=Arabidopsis thaliana OX=3702 GN=PLMT PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-22
Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 1  MGVLAVIGVLFPFPYYYVLWNRPQLWVNLCG-WREPYKLKAQVSIFLKLLKFLSILHVSS 60
          MG+LA IGVL PFP+Y+ LW   Q WVNLCG  R+P  + A+VS  LK  + LS+  V+S
Sbjct: 1  MGLLAAIGVLLPFPFYWWLWTNAQSWVNLCGRERDPSTVMARVSHVLKAAQLLSLFSVAS 60

Query: 61 FSWLPPLYFWPLMAFGQFLNFQVCLYLSD 89
           SW PPLYFWPLMAFGQFLNF+V   L +
Sbjct: 61 LSWPPPLYFWPLMAFGQFLNFRVYQLLGE 89

The following BLAST results are available for this feature:

BLAST of Lag0031444 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037706.1	9.2e-36	81.37	phosphatidyl-N-methylethanolamine N-methyltransferase [Cucumis melo var. makuwa]...	[more]
XP_008465151.2	2.1e-32	82.02	PREDICTED: phosphatidyl-N-methylethanolamine N-methyltransferase [Cucumis melo]	[more]
KAG7036543.1	6.1e-32	82.02	Phosphatidyl-N-methylethanolamine N-methyltransferase [Cucurbita argyrosperma su...	[more]
XP_004137657.1	6.1e-32	80.90	phosphatidyl-N-methylethanolamine N-methyltransferase [Cucumis sativus] >KAE8650...	[more]
XP_023523751.1	6.1e-32	82.02	phosphatidyl-N-methylethanolamine N-methyltransferase [Cucurbita pepo subsp. pep...	[more]

BLAST of Lag0031444 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAH5	4.6e-22	59.55	Phosphatidyl-N-methylethanolamine N-methyltransferase OS=Arabidopsis thaliana OX...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031444.1	Lag0031444.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0006656	phosphatidylcholine biosynthetic process
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004608	phosphatidylethanolamine N-methyltransferase activity
molecular_function	GO:0080101	phosphatidyl-N-dimethylethanolamine N-methyltransferase activity
molecular_function	GO:0000773	phosphatidyl-N-methylethanolamine N-methyltransferase activity