Lag0031442 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACAGAAGATGTTTTGCCATACTTTGCACCTTATTAAAAACAGTTGCCGGTTTATCCAGTACGGAGGTCGTAGATGTAGAAGAGATGGTTGCCATGTTCTTGCACATTGTAGCCCACGATGTTAAGAACCGAGTAGTTCGTACGCAGTTCGCTAGGTCTGGTGAGTCAGTTTCTAGGCATTTCAACACCGTCCTTCATGTGGTGTTACGATTGCATGATGTTCTCTTAAAAAAACCTGAGCCAGTCACAGCCTCTTGTACGGATCCAAGGTGGAAATGGTTTCAGGTATAGATAATTAATCATCCAACTTTAGTTAAGCCTAGACTCACTTCTTAGGGTTAGAACCGTGAACCAAATTTGCCTCTATTATGTGGACGCAGAATTGCCTCGGTGCGTTAGATGGAACATACATCAAGGTGAATGTTGTGTTGTCGATCGCCCGAGGTATAGAACAAGGAAAGGTGAAATTGCAACGAACGTGCTTGCTGTTTGATCAAAGGAGACTTCACATTCGTCTTACCAGGGTGGGAAGGGTCTGCCGCTGATTCCCGGGTTCTTAGAGATGCAATATCAAGACCAAACGGACTCACAGTTCCGAAGGGTAAATAATCAGATCTTTTTTCCTTTCACCGTAGAACCCTTAGGAAGGTGTACTGAGCCAATATCACATTCCACAGGCTATTATTATCTGTGCGATGCTGGGTACCCTAATGCAGAGGGTTTCCTGGCACCGTATAGAGGGGAACGTTACCACCTCTCTGAATGGCGTGGTGCGGGAATGCACCAACTACTCCAAAAGAATTCTTTAACATGAAGCATTCATCTACGAGGAACGTGATTGAGAGGGCATTTGGTTTGTTGAAAGGAAGGTGGGCTATCCTCCGAGGGAAATCGTACTATCCAGTTCGAATTCAAGGCGGACCATCGCAGCATGCTGCTTACTTCACAATCTTATTAATAGAGAGATGGGTGACCGTGAAATTCCTGATGAGCTGGATGAGGTGGATTCTGCTTCTATTACAACTGATGGTGAGAATATCAATTTCATTGAGACTTCCGACGAATGGAGCCGGTGGAGGGATGAGTTGGCAACACAGATGTTTTCGAATTGGGAGTTACGTAATAGCTAATGGATTATGTTGCTTTATAGAATTTAGGAATTGCTTCTTCTAGTTCAAGTATTATTCGCTGGTTGTATTAACTGTTTAGATTCTAATTGTTAATGTACTCTGTTCTTAGTTAATGAGATTTTCATTCATGGTCTTCGTGTACATGATTTTTATTACGTTATAGTTTAGTTTAACATTTTCACACTATGCGTATTCACATAACAGAATGCCAGTTCGTCAAGAGCTCCAAAACACATTTGGACAAAGAACGAGGACGCGAAGCTGGTGGAGTCCCTCGTGTCCTTAGTTCATGCAGGCGGTTGGAGGTCCGATAATGGGACATTCAAAGCTGGGTATTTGGGGCAGTTGGAGAATTTGATGAGGGAGAAACTGCCTGGACAGACGTTCCACACAGAGCAGCATCGACTCTAG ATGGACAGAAGATGTTTTGCCATACTTTGCACCTTATTAAAAACAGTTGCCGGTTTATCCAGTACGGAGGTCGTAGATGTAGAAGAGATGGTTGCCATGTTCTTGCACATTGTAGCCCACGATGTTAAGAACCGAGTAGTTCGTACGCAGTTCGCTAGGTCTGGTGAGTCAGTTTCTAGGCATTTCAACACCGTCCTTCATGTGGTGTTACGATTGCATGATGTTCTCTTAAAAAAACCTGAGCCAGTCACAGCCTCTTGTACGGATCCAAGGTGGAAATGGTTTCAGAATTGCCTCGGTGCGTTAGATGGAACATACATCAAGGTGAATGTTGTGTTGTCGATCGCCCGAGGGTGGGAAGGGTCTGCCGCTGATTCCCGGGTTCTTAGAGATGCAATATCAAGACCAAACGGACTCACAGTTCCGAAGGGCTATTATTATCTGTGCGATGCTGGGTACCCTAATGCAGAGGGTTTCCTGGCACCGTATAGAGGGGAACGTTACCACCTCTCTGAATGGCGTGGAAGGTGGGCTATCCTCCGAGGGAAATCGTACTATCCAGTTCGAATTCAAGGCGGACCATCGCAGCATGCTGCTTACTTCACAATCTTATTAATAGAGAGATGGGTGACCGTGAAATTCCTGATGAGCTGGATGAGGTGGATTCTGCTTCTATTACAACTGATGAATGCCAGTTCGTCAAGAGCTCCAAAACACATTTGGACAAAGAACGAGGACGCGAAGCTGGTGGAGTCCCTCGTGTCCTTAGTTCATGCAGGCGGTTGGAGGTCCGATAATGGGACATTCAAAGCTGGGTATTTGGGGCAGTTGGAGAATTTGATGAGGGAGAAACTGCCTGGACAGACGTTCCACACAGAGCAGCATCGACTCTAG ATGGACAGAAGATGTTTTGCCATACTTTGCACCTTATTAAAAACAGTTGCCGGTTTATCCAGTACGGAGGTCGTAGATGTAGAAGAGATGGTTGCCATGTTCTTGCACATTGTAGCCCACGATGTTAAGAACCGAGTAGTTCGTACGCAGTTCGCTAGGTCTGGTGAGTCAGTTTCTAGGCATTTCAACACCGTCCTTCATGTGGTGTTACGATTGCATGATGTTCTCTTAAAAAAACCTGAGCCAGTCACAGCCTCTTGTACGGATCCAAGGTGGAAATGGTTTCAGAATTGCCTCGGTGCGTTAGATGGAACATACATCAAGGTGAATGTTGTGTTGTCGATCGCCCGAGGGTGGGAAGGGTCTGCCGCTGATTCCCGGGTTCTTAGAGATGCAATATCAAGACCAAACGGACTCACAGTTCCGAAGGGCTATTATTATCTGTGCGATGCTGGGTACCCTAATGCAGAGGGTTTCCTGGCACCGTATAGAGGGGAACGTTACCACCTCTCTGAATGGCGTGGAAGGTGGGCTATCCTCCGAGGGAAATCGTACTATCCAGTTCGAATTCAAGGCGGACCATCGCAGCATGCTGCTTACTTCACAATCTTATTAATAGAGAGATGGGTGACCGTGAAATTCCTGATGAGCTGGATGAGGTGGATTCTGCTTCTATTACAACTGATGAATGCCAGTTCGTCAAGAGCTCCAAAACACATTTGGACAAAGAACGAGGACGCGAAGCTGGTGGAGTCCCTCGTGTCCTTAGTTCATGCAGGCGGTTGGAGGTCCGATAATGGGACATTCAAAGCTGGGTATTTGGGGCAGTTGGAGAATTTGATGAGGGAGAAACTGCCTGGACAGACGTTCCACACAGAGCAGCATCGACTCTAG MDRRCFAILCTLLKTVAGLSSTEVVDVEEMVAMFLHIVAHDVKNRVVRTQFARSGESVSRHFNTVLHVVLRLHDVLLKKPEPVTASCTDPRWKWFQNCLGALDGTYIKVNVVLSIARGWEGSAADSRVLRDAISRPNGLTVPKGYYYLCDAGYPNAEGFLAPYRGERYHLSEWRGRWAILRGKSYYPVRIQGGPSQHAAYFTILLIERWVTVKFLMSWMRWILLLLQLMNASSSRAPKHIWTKNEDAKLVESLVSLVHAGGWRSDNGTFKAGYLGQLENLMREKLPGQTFHTEQHRL Homology
BLAST of Lag0031442 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 359.4 bits (921), Expect = 3.0e-95 Identity = 196/354 (55.37%), Postives = 224/354 (63.28%), Query Frame = 0
BLAST of Lag0031442 vs. NCBI nr
Match: KAA0036474.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 345.5 bits (885), Expect = 4.5e-91 Identity = 183/352 (51.99%), Postives = 221/352 (62.78%), Query Frame = 0
BLAST of Lag0031442 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo]) HSP 1 Score: 343.6 bits (880), Expect = 1.7e-90 Identity = 186/362 (51.38%), Postives = 217/362 (59.94%), Query Frame = 0
BLAST of Lag0031442 vs. NCBI nr
Match: TYK02751.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa]) HSP 1 Score: 325.9 bits (834), Expect = 3.7e-85 Identity = 173/313 (55.27%), Postives = 196/313 (62.62%), Query Frame = 0
BLAST of Lag0031442 vs. NCBI nr
Match: KAA0065306.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 312.0 bits (798), Expect = 5.5e-81 Identity = 177/366 (48.36%), Postives = 208/366 (56.83%), Query Frame = 0
BLAST of Lag0031442 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1) HSP 1 Score: 359.4 bits (921), Expect = 1.5e-95 Identity = 196/354 (55.37%), Postives = 224/354 (63.28%), Query Frame = 0
BLAST of Lag0031442 vs. ExPASy TrEMBL
Match: A0A5A7SYW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold147G00430 PE=3 SV=1) HSP 1 Score: 345.5 bits (885), Expect = 2.2e-91 Identity = 183/352 (51.99%), Postives = 221/352 (62.78%), Query Frame = 0
BLAST of Lag0031442 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1) HSP 1 Score: 343.6 bits (880), Expect = 8.3e-91 Identity = 186/362 (51.38%), Postives = 217/362 (59.94%), Query Frame = 0
BLAST of Lag0031442 vs. ExPASy TrEMBL
Match: A0A5D3BSN2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00050 PE=3 SV=1) HSP 1 Score: 325.9 bits (834), Expect = 1.8e-85 Identity = 173/313 (55.27%), Postives = 196/313 (62.62%), Query Frame = 0
BLAST of Lag0031442 vs. ExPASy TrEMBL
Match: A0A803QNC5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 325.5 bits (833), Expect = 2.3e-85 Identity = 174/356 (48.88%), Postives = 210/356 (58.99%), Query Frame = 0
BLAST of Lag0031442 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 119.8 bits (299), Expect = 3.8e-27 Identity = 70/194 (36.08%), Postives = 102/194 (52.58%), Query Frame = 0
BLAST of Lag0031442 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 92.8 bits (229), Expect = 4.9e-19 Identity = 67/214 (31.31%), Postives = 94/214 (43.93%), Query Frame = 0
BLAST of Lag0031442 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 73.6 bits (179), Expect = 3.1e-13 Identity = 58/178 (32.58%), Postives = 83/178 (46.63%), Query Frame = 0
BLAST of Lag0031442 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 62.8 bits (151), Expect = 5.5e-10 Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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