Lag0031430 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031430
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Mediator of RNA polymerase II transcription subunit 6
Location	chr11: 8392124 .. 8395059 (-)
RNA-Seq Expression	Lag0031430
Synteny	Lag0031430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTCCACCGCCACCCGCGCCGCCGCCGGGGATCGGGAATTTTGAAGGGGGACCACCGCCGGCAGCGCCCCAGCCGCCAGGGACGGACATGACCGGAATTTGCTTCAGAGACCAGCTGTGGCTCAATACTTACCCTCTTGATCGGAACTTGGTTTTCGATTACTTCGCCTTGTCTCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTCTCTCAACTCTCGTATGATTTCGTCTCCTAATTTCTTGTTTCTGTTGATAGGGTTCGTTTTTTCTTTTGATAATTTTCTTCATCTAATTGATCGTATATATCACAAATGTTATGTTCTTTCTTCTACTTGGATAGCTCAACCATGTTCTTGATTTATTCTTGTTCAAGTCAGATTGTCAAAAATTGGAACTGGGATTCTTAATACATTGTTAATTTCTTGTAATAAGTGTTGTTAATTGTAATCCTAGGTTTCAATTTTCATTTAGGCATTATCATGATGGGGAAATCTTCTTTTCAACAGAAAAATGACAGGTACAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTTGTTTTCCGAAAGCAAAAGAGGGATGGTCCTGAGAAAGTCACACCAATGTTGACTTATTATATCTTGGATGGTTCTATTTATCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGAGTTGTGAGATTGTCATACTTATCTTTCTTTGTCAATGCAATTTATTTGGTGCAGTCTTAGTTTTGTTTTGTTTTGTTTTTTGTTTTTTTTAGCTGATAATTGATGCATATGGATCGGATTTCATAGTTGCATTCAGTAAATTATCATAATGGGAAATATCTCTTAAATAGCATAATGGAAACTTAATTGTTGTTCTAATTAGTGATATTGTAGATTATCAAACTTCATCATCTTAAATATTGTTGGGTTTTTACCCCATTATTTGAGATGTATGTTGAATTTGTTGTAAGTTATAAGGCTATTCTGCATTCTGCCTCTCTCTTGCTTTGTTTTGTTGGAGACTTATGTTGAGTTTTCATCATACCACAGAGCCGGGCACTATATTACATATCGAAGGCCTTTACCACTGCTTCCTCGAAGTTGGAGAAGATCGGATATGGTATCTAGCTCTTGATGATATATTTTTTGCTCTTGCTATTTTAAGTTGTGGGAAAAAGATGATCATTCATGATTCACCAATGATTTTATGTGCTTAAGGTTTTGCTATCTTATCTTAACATGGGTTGTTTTTAAAATCTTAGTTTAACTAATTTATCATCTTTTTTATTGTTGCTAATGAAGAGTTAGACTCATTGACTCCAAAAAACAAGAAAGAGAGATAAACTCTATCATGGCCTTTGCTATAAATATTTGATGATTATAGTACCCAATAGGCTTTATGAAAGTTCTTCTAAATTCAAACTTCAGTTTCAGAAATCTAATTGTCTTTGAAAAGAGGTGATACAAAGTGTATAAACTATAAAAATGAGCCAAGATAGATTGTCCCACATATATGCAATAGTTCATTCTGATAAGAAACGTAGAATAAGACAGATACAGTGACATTGCCTTAGCCTGATGATGATGATCTTTGAACTTTGTTCTTTCAGCTTGCAGCTTCATTTTTATTAATTGTTCTCATTTTTTGTTCAGTTGATTCCGAAAATGAGAGTGAAGAAGTAAAACCTGGAAAAGAGACCATTGATTTTAAGGAAGTAAAGCGAGTTGATCGCATTCTTGCATCCTTGCAGCGCAAGGTAACTTAAATATCACGAAGCATCTGCTCTCAATTGACATATTGGTACTGCATAAGCTTCATTTTTTCTATAACAGAAAATCATATTTTGTTTGTGTATATATTGCAAAGAGCTAATTTATCAAACGTCCAGTATTAAGAAGAAAGTGGTGAGAATTTGGATGCAGTTTTTCTTTAGTCATAATCTCACCTGATGAAATTTTTTAGCTTTGTTTGATAAATGTTTTTGAAATTTCTGTTTTTTAAACAAAAATGGCTGTGACTACATGTATGAATAGTTATTTTCCAACTGACGTTTTTTCTTATTGTGTGTTCTCATGGATGACCTATATTTTGAAATAAATGAAATTATTTTTACTTACAAAATTTGGAGTATGAGTAATAAATTTGATGTGCATAATGACATGTTTACAAATTATCCATCCGATCACTATTTGTTAAAGCTGTTCGAAATCCTCAACTTTGTATTCTTACGTGGATTAGGCATTCATTATTGTGCTGAATCCTCAAGTCTGTTCAAAATAAGTGCCATTGAAAAAGAAAAAAAAAAAGGTGTTATTCATATGCATATGATTTCTCCAAGGGGTAGAACTATTGGGGTGGGTCTTCAGATACATTTCAAGGATTTTGATCGTTGTTGCATTTGATTTAGTAATAATAGAACTTTGTATGAAGTCTCATCCGTTTATAAACTTGAACAACATGACCACATCTGATCTAACTACCCCTAATCTACATTACTCGCTCTAAATGTAGAAGAAATAACTTGGGCTTCATATGTGTCCTGAGAAGGTCCGAACCAATAAAATCACATATACTATCTATAATTAAATGAATTTATTACACTTAAAACTTCTAAAAAGTTTGAATTATCTCAGGAGATAAGTTGCTAGTATGGGCTGCAAATGACTTGTTCTACATGCATATTTATGATTTATGTTTTTTATATCAAGACTTAGCTGATGATATTCGTGTAAATTGCAGCTGCCACCTGCCCCACCACCCCCACCGTTTCCAGAAGGTTATGTTCCTGCTCCCGCATCAGAAGCAGAAAAAGGCCCTGAAAACCAGCAAGGAGAGCCGCAACAGCCTCCAGCAGATCCCATTATTGATCAAGGCCCAGCTAAAAGGATGAAATTTTGA

mRNA sequence

ATGGCTACTCCACCGCCACCCGCGCCGCCGCCGGGGATCGGGAATTTTGAAGGGGGACCACCGCCGGCAGCGCCCCAGCCGCCAGGGACGGACATGACCGGAATTTGCTTCAGAGACCAGCTGTGGCTCAATACTTACCCTCTTGATCGGAACTTGGTTTTCGATTACTTCGCCTTGTCTCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTCTCTCAACTCTCAAAAATGACAGGTACAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTTGTTTTCCGAAAGCAAAAGAGGGATGGTCCTGAGAAAGTCACACCAATGTTGACTTATTATATCTTGGATGGTTCTATTTATCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGAGTTAGCCGGGCACTATATTACATATCGAAGGCCTTTACCACTGCTTCCTCGAAGTTGGAGAAGATCGGATATGTTGATTCCGAAAATGAGAGTGAAGAAGTAAAACCTGGAAAAGAGACCATTGATTTTAAGGAAGTAAAGCGAGTTGATCGCATTCTTGCATCCTTGCAGCGCAAGCTGCCACCTGCCCCACCACCCCCACCGTTTCCAGAAGGTTATGTTCCTGCTCCCGCATCAGAAGCAGAAAAAGGCCCTGAAAACCAGCAAGGAGAGCCGCAACAGCCTCCAGCAGATCCCATTATTGATCAAGGCCCAGCTAAAAGGATGAAATTTTGA

Coding sequence (CDS)

ATGGCTACTCCACCGCCACCCGCGCCGCCGCCGGGGATCGGGAATTTTGAAGGGGGACCACCGCCGGCAGCGCCCCAGCCGCCAGGGACGGACATGACCGGAATTTGCTTCAGAGACCAGCTGTGGCTCAATACTTACCCTCTTGATCGGAACTTGGTTTTCGATTACTTCGCCTTGTCTCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTCTCTCAACTCTCAAAAATGACAGGTACAGAGTACATGCTGAATGAAGTTATGGAGCCTCACCTTTTTGTTTTCCGAAAGCAAAAGAGGGATGGTCCTGAGAAAGTCACACCAATGTTGACTTATTATATCTTGGATGGTTCTATTTATCAGGCGCCTCAGCTTTGCAATGTTTTTGCTGCCCGAGTTAGCCGGGCACTATATTACATATCGAAGGCCTTTACCACTGCTTCCTCGAAGTTGGAGAAGATCGGATATGTTGATTCCGAAAATGAGAGTGAAGAAGTAAAACCTGGAAAAGAGACCATTGATTTTAAGGAAGTAAAGCGAGTTGATCGCATTCTTGCATCCTTGCAGCGCAAGCTGCCACCTGCCCCACCACCCCCACCGTTTCCAGAAGGTTATGTTCCTGCTCCCGCATCAGAAGCAGAAAAAGGCCCTGAAAACCAGCAAGGAGAGCCGCAACAGCCTCCAGCAGATCCCATTATTGATCAAGGCCCAGCTAAAAGGATGAAATTTTGA

Protein sequence

MATPPPPAPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPGKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPENQQGEPQQPPADPIIDQGPAKRMKF

Homology

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BLAST of Lag0031430 vs. NCBI nr
Match: XP_022148297.1 (mediator of RNA polymerase II transcription subunit 6 [Momordica charantia])

HSP 1 Score: 486.5 bits (1251), Expect = 1.4e-133
Identity = 243/254 (95.67%), Postives = 245/254 (96.46%), Query Frame = 0


Query: 1   MATPPPPAPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPPA PPGI NFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPG 180
           LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPG
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPG 180

Query: 181 KETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPENQQGEPQQPPA 240
           KETI+FKEVKRVD ILASLQRKLPPAPPPPPFPEGYVPAP +E EKGPENQ  E QQP A
Sbjct: 181 KETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAELQQPSA 240

Query: 241 DPIIDQGPAKRMKF 255
           DPIIDQGPAKRMKF
Sbjct: 241 DPIIDQGPAKRMKF 254

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BLAST of Lag0031430 vs. NCBI nr
Match: XP_023524903.1 (mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo] >XP_023524905.1 mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo] >KAG7036453.1 Mediator of RNA polymerase II transcription subunit 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 483.8 bits (1244), Expect = 9.1e-133
Identity = 244/254 (96.06%), Postives = 245/254 (96.46%), Query Frame = 0


Query: 1   MATPPPPAPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATP    PPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATP----PPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPG 180
           LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180

Query: 181 KETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPENQQGEPQQPPA 240
           K TIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPE+QQGE QQP A
Sbjct: 181 KGTIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAA 240

Query: 241 DPIIDQGPAKRMKF 255
           DPIIDQGPAKRMKF
Sbjct: 241 DPIIDQGPAKRMKF 250

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BLAST of Lag0031430 vs. NCBI nr
Match: KAG6606737.1 (Mediator of RNA polymerase II transcription subunit 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 482.6 bits (1241), Expect = 2.0e-132
Identity = 243/254 (95.67%), Postives = 245/254 (96.46%), Query Frame = 0


Query: 1   MATPPPPAPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATP    PPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATP----PPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPG 180
           LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENE+EEVKP 
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENENEEVKPA 180

Query: 181 KETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPENQQGEPQQPPA 240
           K TIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPE+QQGE QQP A
Sbjct: 181 KGTIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAA 240

Query: 241 DPIIDQGPAKRMKF 255
           DPIIDQGPAKRMKF
Sbjct: 241 DPIIDQGPAKRMKF 250

[Close]

BLAST of Lag0031430 vs. NCBI nr
Match: XP_022948318.1 (mediator of RNA polymerase II transcription subunit 6 [Cucurbita moschata])

HSP 1 Score: 482.6 bits (1241), Expect = 2.0e-132
Identity = 244/254 (96.06%), Postives = 245/254 (96.46%), Query Frame = 0


Query: 1   MATPPPPAPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATP    PPPGIGNFEGGPP AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATP----PPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPG 180
           LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180

Query: 181 KETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPENQQGEPQQPPA 240
           KETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPE+QQGE QQP A
Sbjct: 181 KETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAA 240

Query: 241 DPIIDQGPAKRMKF 255
           DPIIDQGPAKRMKF
Sbjct: 241 DPIIDQGPAKRMKF 250

[Close]

BLAST of Lag0031430 vs. NCBI nr
Match: XP_022998637.1 (mediator of RNA polymerase II transcription subunit 6 [Cucurbita maxima])

HSP 1 Score: 479.6 bits (1233), Expect = 1.7e-131
Identity = 242/254 (95.28%), Postives = 244/254 (96.06%), Query Frame = 0


Query: 1   MATPPPPAPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATP    PPPGIGNFEGGPPPAAPQ PGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATP----PPPGIGNFEGGPPPAAPQQPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPG 180
           LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE+VKP 
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEDVKPA 180

Query: 181 KETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPENQQGEPQQPPA 240
           K TIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPE+QQGE QQP A
Sbjct: 181 KGTIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAA 240

Query: 241 DPIIDQGPAKRMKF 255
           DPIIDQGPAKRMKF
Sbjct: 241 DPIIDQGPAKRMKF 250

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BLAST of Lag0031430 vs. ExPASy Swiss-Prot
Match: F4IXJ7 (Mediator of RNA polymerase II transcription subunit 6 OS=Arabidopsis thaliana OX=3702 GN=MED6 PE=1 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.1e-85
Identity = 175/278 (62.95%), Postives = 191/278 (68.71%), Query Frame = 0


Query: 20  PPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP 79
           PPP   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHP
Sbjct: 23  PPPL--QPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHP 82

Query: 80  LDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNV 139
           LDLS LSKMTG EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+V
Sbjct: 83  LDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSV 142

Query: 140 FAARVSRALYYISKAFTTASSKLEKI---------------------------------- 199
           FAARVSR +Y ISKAFT A+SKLE I                                  
Sbjct: 143 FAARVSRTIYNISKAFTDAASKLETIRQDLQVCLVAIVLSLSVNLGSYFLLIFKLMANGE 202

Query: 200 ---GY------VDSENESEEVKPGKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGY 255
              G+       +++NE  E KP  ET+D KE+KRVD IL SL RKL P PPPPPFPEGY
Sbjct: 203 QVYGFNKFLFDTENQNEPAESKPASETVDLKEMKRVDVILTSLYRKLAPPPPPPPFPEGY 262

[Close]

BLAST of Lag0031430 vs. ExPASy Swiss-Prot
Match: Q54PN3 (Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum OX=44689 GN=med6 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.4e-27
Identity = 75/191 (39.27%), Postives = 110/191 (57.59%), Query Frame = 0


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG 90
           D+T + +RD LWL  YPL+   +  YF+ S FYD  CNNEQL+M+    LDLS L  M G
Sbjct: 65  DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDG 124

Query: 91  TEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYY 150
            EY L + +EP  F+  KQ R  P  V     YY+++G+IYQAP+L  VF +RVS+++ +
Sbjct: 125 LEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISH 184

Query: 151 ISKAFTTASSKLE---KIGY---VDSENESEEVK-PGKETIDFKEVKRVDRILASLQRKL 210
           +S+AF + SS +      GY   +D  N+ E+ K         ++ KR+D+++ SL  K 
Sbjct: 185 LSEAFNSISSIVNWDIVNGYSLNLDPSNQQEKSKLAAYSRKQIEDTKRLDQLINSLFIKF 244

Query: 211 PPAPPPPPFPE 215
           P    P   P+
Sbjct: 245 PAINRPVENPQ 252

[Close]

BLAST of Lag0031430 vs. ExPASy Swiss-Prot
Match: Q921D4 (Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus OX=10090 GN=Med6 PE=1 SV=2)

HSP 1 Score: 105.5 bits (262), Expect = 8.8e-22
Identity = 87/241 (36.10%), Postives = 124/241 (51.45%), Query Frame = 0


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKM 90
           ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 91  TGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRAL 150
            G EY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L +V  +RV  A+
Sbjct: 69  VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 128

Query: 151 YYISKAFTTASSKLE---KIGY---VDSENESEEVKP----GKETIDFKEVKRVDRILAS 210
           + I  AF  A S        GY        E E+VKP     +E     + +RVD +L  
Sbjct: 129 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQEKVKPKAKRKEEPSSIFQRQRVDALLID 188

Query: 211 LQRKLPPAPPPPPFPEGYVPAPAS--EAEKGPENQQGEPQQPPAD---PIIDQG-PAKRM 254
           L++K PP        E  VP   +  EAE  PE  + E ++   +    +  +G P KRM
Sbjct: 189 LRQKFPPRFVQQKSGEKPVPVDQAKKEAEPLPETVKSEEKESTKNIQQTVSTKGPPEKRM 244

[Close]

BLAST of Lag0031430 vs. ExPASy Swiss-Prot
Match: Q3SZY9 (Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus OX=9913 GN=MED6 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-21
Identity = 86/241 (35.68%), Postives = 122/241 (50.62%), Query Frame = 0


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKM 90
           ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 91  TGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRAL 150
            G EY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L +V  +RV  A+
Sbjct: 69  VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 128

Query: 151 YYISKAFTTASSKLE---KIGY---VDSENESEEVKP----GKETIDFKEVKRVDRILAS 210
           + I  AF  A S        GY        E ++VKP     +E     + +RVD +L  
Sbjct: 129 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKVKRKEEPSSIFQRQRVDALLLD 188

Query: 211 LQRKLPPAPPPPPFPEGYVPAPAS--EAEKGPENQQGEPQQPPADPIIDQG----PAKRM 254
           L++K PP        E  VP   +  EAE  PE  + E ++   +     G    P KRM
Sbjct: 189 LRQKFPPKFVQQKSGEKPVPVDQTKKEAEPLPETVKSEEKETAKNVQQTVGTKGPPEKRM 244

[Close]

BLAST of Lag0031430 vs. ExPASy Swiss-Prot
Match: Q5RD94 (Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii OX=9601 GN=MED6 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.4e-21
Identity = 82/241 (34.02%), Postives = 121/241 (50.21%), Query Frame = 0


Query: 31  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKM 90
           ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 91  TGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRAL 150
            G EY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L +V  +RV  A+
Sbjct: 69  VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 128

Query: 151 YYISKAFTTASSKLE---KIGY---VDSENESEEVKP----GKETIDFKEVKRVDRILAS 210
           + I  AF  A S        GY        E ++V+P     +E     + +RVD +L  
Sbjct: 129 HGIQSAFDEAMSYCRYHPSKGYWWHFKEHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLD 188

Query: 211 LQRKLPPAPPPPPFPEGYVPAPASEAEKGPENQQGEPQQPPADPIIDQ------GPAKRM 254
           L++K PP        E  VP   ++ E  P  +  +P++      + Q       P KRM
Sbjct: 189 LRQKFPPKFVQLKPGEKPVPVDQTKKEAEPVPETVKPEEKETTKNVQQTVSAKGPPEKRM 244

[Close]

BLAST of Lag0031430 vs. ExPASy TrEMBL
Match: A0A6J1D4P7 (Mediator of RNA polymerase II transcription subunit 6 OS=Momordica charantia OX=3673 GN=LOC111016983 PE=3 SV=1)

HSP 1 Score: 486.5 bits (1251), Expect = 6.8e-134
Identity = 243/254 (95.67%), Postives = 245/254 (96.46%), Query Frame = 0


Query: 1   MATPPPPAPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPPA PPGI NFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPAAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPG 180
           LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPG
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPG 180

Query: 181 KETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPENQQGEPQQPPA 240
           KETI+FKEVKRVD ILASLQRKLPPAPPPPPFPEGYVPAP +E EKGPENQ  E QQP A
Sbjct: 181 KETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAELQQPSA 240

Query: 241 DPIIDQGPAKRMKF 255
           DPIIDQGPAKRMKF
Sbjct: 241 DPIIDQGPAKRMKF 254

[Close]

BLAST of Lag0031430 vs. ExPASy TrEMBL
Match: A0A6J1G911 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111452031 PE=3 SV=1)

HSP 1 Score: 482.6 bits (1241), Expect = 9.8e-133
Identity = 244/254 (96.06%), Postives = 245/254 (96.46%), Query Frame = 0


Query: 1   MATPPPPAPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATP    PPPGIGNFEGGPP AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATP----PPPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPG 180
           LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180

Query: 181 KETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPENQQGEPQQPPA 240
           KETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPE+QQGE QQP A
Sbjct: 181 KETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAA 240

Query: 241 DPIIDQGPAKRMKF 255
           DPIIDQGPAKRMKF
Sbjct: 241 DPIIDQGPAKRMKF 250

[Close]

BLAST of Lag0031430 vs. ExPASy TrEMBL
Match: A0A6J1K8I9 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111493224 PE=3 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 8.3e-132
Identity = 242/254 (95.28%), Postives = 244/254 (96.06%), Query Frame = 0


Query: 1   MATPPPPAPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATP    PPPGIGNFEGGPPPAAPQ PGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATP----PPPGIGNFEGGPPPAAPQQPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPG 180
           LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE+VKP 
Sbjct: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEDVKPA 180

Query: 181 KETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPENQQGEPQQPPA 240
           K TIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPE+QQGE QQP A
Sbjct: 181 KGTIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPAA 240

Query: 241 DPIIDQGPAKRMKF 255
           DPIIDQGPAKRMKF
Sbjct: 241 DPIIDQGPAKRMKF 250

[Close]

BLAST of Lag0031430 vs. ExPASy TrEMBL
Match: A0A0A0L8C2 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_3G434940 PE=3 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 1.2e-130
Identity = 238/254 (93.70%), Postives = 241/254 (94.88%), Query Frame = 0


Query: 1   MATPPPPAPPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60
           MATPPPP  PPG GNFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS
Sbjct: 1   MATPPPPTAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALS 60

Query: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120
           PFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVMEPHLFVFRKQKRDGPEKVTPM
Sbjct: 61  PFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPM 120

Query: 121 LTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPG 180
           LTYYILDGSIYQAPQLC+VFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 
Sbjct: 121 LTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPA 180

Query: 181 KETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPENQQGEPQQPPA 240
           KETI+FKEVKRVD ILASLQRKLPPAPPPPPFPEGY PA  +E EKGPENQQGE QQP A
Sbjct: 181 KETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPSA 240

Query: 241 DPIIDQGPAKRMKF 255
           DPIIDQGPAKRMKF
Sbjct: 241 DPIIDQGPAKRMKF 254

[Close]

BLAST of Lag0031430 vs. ExPASy TrEMBL
Match: A0A5D3CDR8 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00160 PE=3 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 1.6e-130
Identity = 239/255 (93.73%), Postives = 242/255 (94.90%), Query Frame = 0


Query: 1   MATPPPP-APPPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPP   PPG GNFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 GKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPENQQGEPQQPP 240
            KETI+FKEVKRVD ILASLQRKLPPAPPPPPFPEGY PAP ++ EKGPENQQGE QQP 
Sbjct: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPS 240

Query: 241 ADPIIDQGPAKRMKF 255
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 255

[Close]

BLAST of Lag0031430 vs. TAIR 10
Match: AT3G21350.1 (RNA polymerase transcriptional regulation mediator-related )

HSP 1 Score: 339.3 bits (869), Expect = 2.6e-93
Identity = 177/237 (74.68%), Postives = 192/237 (81.01%), Query Frame = 0


Query: 20  PPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP 79
           PPP   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHP
Sbjct: 23  PPPL--QPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHP 82

Query: 80  LDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNV 139
           LDLS LSKMTG EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+V
Sbjct: 83  LDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSV 142

Query: 140 FAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--EVKPGKETIDFKEVKRVDRILA 199
           FAARVSR +Y ISKAFT A+SKLE I  VD+EN++E  E KP  ET+D KE+KRVD IL 
Sbjct: 143 FAARVSRTIYNISKAFTDAASKLETIRQVDTENQNEPAESKPASETVDLKEMKRVDVILT 202

Query: 200 SLQRKLPPAPPPPPFPEGYVPAPASEAEKGPENQQGEPQQPPADPIIDQGPAKRMKF 255
           SL RKL P PPPPPFPEGYV   A   ++    Q GE Q P  DPIIDQGPAKRMKF
Sbjct: 203 SLYRKLAPPPPPPPFPEGYVSQEALGEKEELGTQGGESQPPQVDPIIDQGPAKRMKF 257

[Close]

BLAST of Lag0031430 vs. TAIR 10
Match: AT3G21350.2 (RNA polymerase transcriptional regulation mediator-related )

HSP 1 Score: 317.8 bits (813), Expect = 8.0e-87
Identity = 175/278 (62.95%), Postives = 191/278 (68.71%), Query Frame = 0


Query: 20  PPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHP 79
           PPP   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TCNNE LR RSIHP
Sbjct: 23  PPPL--QPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTCNNEILRRRSIHP 82

Query: 80  LDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNV 139
           LDLS LSKMTG EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLC+V
Sbjct: 83  LDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCSV 142

Query: 140 FAARVSRALYYISKAFTTASSKLEKI---------------------------------- 199
           FAARVSR +Y ISKAFT A+SKLE I                                  
Sbjct: 143 FAARVSRTIYNISKAFTDAASKLETIRQDLQVCLVAIVLSLSVNLGSYFLLIFKLMANGE 202

Query: 200 ---GY------VDSENESEEVKPGKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGY 255
              G+       +++NE  E KP  ET+D KE+KRVD IL SL RKL P PPPPPFPEGY
Sbjct: 203 QVYGFNKFLFDTENQNEPAESKPASETVDLKEMKRVDVILTSLYRKLAPPPPPPPFPEGY 262

The following BLAST results are available for this feature:

BLAST of Lag0031430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148297.1	1.4e-133	95.67	mediator of RNA polymerase II transcription subunit 6 [Momordica charantia]	[more]
XP_023524903.1	9.1e-133	96.06	mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pep...	[more]
KAG6606737.1	2.0e-132	95.67	Mediator of RNA polymerase II transcription subunit 6, partial [Cucurbita argyro...	[more]
XP_022948318.1	2.0e-132	96.06	mediator of RNA polymerase II transcription subunit 6 [Cucurbita moschata]	[more]
XP_022998637.1	1.7e-131	95.28	mediator of RNA polymerase II transcription subunit 6 [Cucurbita maxima]	[more]

BLAST of Lag0031430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IXJ7	1.1e-85	62.95	Mediator of RNA polymerase II transcription subunit 6 OS=Arabidopsis thaliana OX...	[more]
Q54PN3	2.4e-27	39.27	Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium ...	[more]
Q921D4	8.8e-22	36.10	Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus OX=10090 G...	[more]
Q3SZY9	1.5e-21	35.68	Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus OX=9913 GN=M...	[more]
Q5RD94	3.4e-21	34.02	Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii OX=9601 GN...	[more]

BLAST of Lag0031430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D4P7	6.8e-134	95.67	Mediator of RNA polymerase II transcription subunit 6 OS=Momordica charantia OX=...	[more]
A0A6J1G911	9.8e-133	96.06	Mediator of RNA polymerase II transcription subunit 6 OS=Cucurbita moschata OX=3...	[more]
A0A6J1K8I9	8.3e-132	95.28	Mediator of RNA polymerase II transcription subunit 6 OS=Cucurbita maxima OX=366...	[more]
A0A0A0L8C2	1.2e-130	93.70	Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis sativus OX=3659...	[more]
A0A5D3CDR8	1.6e-130	93.73	Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo var. makuw...	[more]

BLAST of Lag0031430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21350.1	2.6e-93	74.68	RNA polymerase transcriptional regulation mediator-related	[more]
AT3G21350.2	8.0e-87	62.95	RNA polymerase transcriptional regulation mediator-related	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007018	Mediator complex, subunit Med6	PFAM	PF04934	Med6	coord: 35..160 e-value: 3.3E-40 score: 136.9
IPR007018	Mediator complex, subunit Med6	PANTHER	PTHR13104	MED-6-RELATED	coord: 20..254
IPR038566	Mediator complex, subunit Med6 superfamily	GENE3D	3.10.450.580	Mediator complex, subunit Med6	coord: 29..158 e-value: 5.3E-44 score: 151.5
IPR016820	Mediator complex, subunit Med6, metazoa/plant	PIRSF	PIRSF023869	MED6_meta/plant	coord: 20..254 e-value: 1.6E-86 score: 287.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..217
None	No IPR available	PANTHER	PTHR13104:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6	coord: 20..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031430.1	Lag0031430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0003712	transcription coregulator activity