Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAACCCAGCAATTCGAATTCAGAATCTGAAAGTACAGAACTCAAAAGGGTAAATCAGAAACACCCGATTTACAGAGGCGTACGGAAGAGGAGTTGGGGCAAATGGGTATCGGAGATCCGGCAGCCGCGGAAGAAAACTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCGGCGCGTGCCCACGACGTGGCGGCACTCAGCATCAAAGGCGATTCGGCTAAAGCGATTCTCAACTTCCCTCAACTCGCCGGTTTGCTTCCCCGCCCGGTGTCGCTAATGCCGAGGGACATTCAGGCGGCGGCGGCCAAGGCGGCGGCGATGGTGGAGTTCAATTCCATGACGGCGTCGTTCTCGTCGTCCAATGATGAAGAAGGGTCTGATGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGAGCTGAGTCGTGGAATGAGTTCGAGATGATTGACTCGGTTGATTGGTGGGGGAATCCGCCGTTTGCGGCGGCGGAAATGGATTTCTTTCCGGGGTTTTCCGATCAGAGTACGATTCCGGTCACCTTTGACGGCGGCGATTGA
mRNA sequence
ATGGCGGAACCCAGCAATTCGAATTCAGAATCTGAAAGTACAGAACTCAAAAGGGTAAATCAGAAACACCCGATTTACAGAGGCGTACGGAAGAGGAGTTGGGGCAAATGGGTATCGGAGATCCGGCAGCCGCGGAAGAAAACTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCGGCGCGTGCCCACGACGTGGCGGCACTCAGCATCAAAGGCGATTCGGCTAAAGCGATTCTCAACTTCCCTCAACTCGCCGGTTTGCTTCCCCGCCCGGTGTCGCTAATGCCGAGGGACATTCAGGCGGCGGCGGCCAAGGCGGCGGCGATGGTGGAGTTCAATTCCATGACGGCGTCGTTCTCGTCGTCCAATGATGAAGAAGGGTCTGATGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGAGCTGAGTCGTGGAATGAGTTCGAGATGATTGACTCGGTTGATTGGTGGGGGAATCCGCCGTTTGCGGCGGCGGAAATGGATTTCTTTCCGGGGTTTTCCGATCAGAGTACGATTCCGGTCACCTTTGACGGCGGCGATTGA
Coding sequence (CDS)
ATGGCGGAACCCAGCAATTCGAATTCAGAATCTGAAAGTACAGAACTCAAAAGGGTAAATCAGAAACACCCGATTTACAGAGGCGTACGGAAGAGGAGTTGGGGCAAATGGGTATCGGAGATCCGGCAGCCGCGGAAGAAAACTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCGGCGCGTGCCCACGACGTGGCGGCACTCAGCATCAAAGGCGATTCGGCTAAAGCGATTCTCAACTTCCCTCAACTCGCCGGTTTGCTTCCCCGCCCGGTGTCGCTAATGCCGAGGGACATTCAGGCGGCGGCGGCCAAGGCGGCGGCGATGGTGGAGTTCAATTCCATGACGGCGTCGTTCTCGTCGTCCAATGATGAAGAAGGGTCTGATGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAATCAGAGCTGAGTCGTGGAATGAGTTCGAGATGATTGACTCGGTTGATTGGTGGGGGAATCCGCCGTTTGCGGCGGCGGAAATGGATTTCTTTCCGGGGTTTTCCGATCAGAGTACGATTCCGGTCACCTTTGACGGCGGCGATTGA
Protein sequence
MAEPSNSNSESESTELKRVNQKHPIYRGVRKRSWGKWVSEIRQPRKKTRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVEFNSMTASFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEMIDSVDWWGNPPFAAAEMDFFPGFSDQSTIPVTFDGGD
Homology
BLAST of Lag0031404 vs. NCBI nr
Match:
XP_038906604.1 (ethylene-responsive transcription factor TINY-like [Benincasa hispida])
HSP 1 Score: 328.2 bits (840), Expect = 4.9e-86
Identity = 171/201 (85.07%), Postives = 180/201 (89.55%), Query Frame = 0
Query: 1 MAEPSNSNSESESTELKR--------VNQKHPIYRGVRKRSWGKWVSEIRQPRKKTRIWL 60
MAEP+N NSESE+TE+KR +QKHPIYRGVRKRSWGKWVSEIRQPRKK+RIWL
Sbjct: 32 MAEPNNWNSESENTEIKRGKQGDQEQRDQKHPIYRGVRKRSWGKWVSEIRQPRKKSRIWL 91
Query: 61 GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMV 120
GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQ AAAKAAAMV
Sbjct: 92 GTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQKAAAKAAAMV 151
Query: 121 EFNSMTASFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEMIDSVDWWGNPPFAAAE 180
+F+S T S SSSND+EGSDELGEIVELPNIE +IRAESWNEFE IDSVDWWGNPPFAA E
Sbjct: 152 DFDSATVSLSSSNDDEGSDELGEIVELPNIEGDIRAESWNEFEFIDSVDWWGNPPFAAGE 211
Query: 181 MDFFPGFSDQSTIPVTFDGGD 194
MDF FSDQST PVTFDGGD
Sbjct: 212 MDFCAVFSDQSTPPVTFDGGD 232
BLAST of Lag0031404 vs. NCBI nr
Match:
XP_022949201.1 (ethylene-responsive transcription factor TINY-like [Cucurbita moschata])
HSP 1 Score: 322.0 bits (824), Expect = 3.5e-84
Identity = 164/193 (84.97%), Postives = 175/193 (90.67%), Query Frame = 0
Query: 1 MAEPSNSNSESESTELKRVNQKHPIYRGVRKRSWGKWVSEIRQPRKKTRIWLGTFTTAEM 60
MAEP+NSN ESESTE+KR N+KH IYRGVRKRSWGKWVSEIRQPRKK+RIWLGTFTT EM
Sbjct: 1 MAEPNNSNLESESTEIKRGNRKHQIYRGVRKRSWGKWVSEIRQPRKKSRIWLGTFTTPEM 60
Query: 61 AARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVEFNSMTAS 120
AARAHDVA LSIKGDSAK ILNFPQLAGLLPRPVSLMP DIQAAAAKAAAMV+F+S +
Sbjct: 61 AARAHDVALLSIKGDSAKPILNFPQLAGLLPRPVSLMPTDIQAAAAKAAAMVDFDSTVPT 120
Query: 121 FSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEMIDSVDWWGNPPFAAAEMDFFPGFS 180
SSSNDEEGSDELGEIVELPNIEEEI AES N+FE++DSVDWWGNPP+ AAE DFF GFS
Sbjct: 121 TSSSNDEEGSDELGEIVELPNIEEEISAESLNKFELVDSVDWWGNPPYTAAETDFFAGFS 180
Query: 181 DQSTIPVTFDGGD 194
DQ TIPV FDGGD
Sbjct: 181 DQCTIPVIFDGGD 193
BLAST of Lag0031404 vs. NCBI nr
Match:
XP_022997866.1 (ethylene-responsive transcription factor TINY-like [Cucurbita maxima])
HSP 1 Score: 320.9 bits (821), Expect = 7.8e-84
Identity = 164/193 (84.97%), Postives = 174/193 (90.16%), Query Frame = 0
Query: 1 MAEPSNSNSESESTELKRVNQKHPIYRGVRKRSWGKWVSEIRQPRKKTRIWLGTFTTAEM 60
MAE SNSN ESESTE+KR N+KH IYRGVRKRSWGKWVSEIRQPRKK+RIWLGTFTT EM
Sbjct: 1 MAEASNSNLESESTEIKRGNRKHQIYRGVRKRSWGKWVSEIRQPRKKSRIWLGTFTTPEM 60
Query: 61 AARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVEFNSMTAS 120
AARAHDVA LSIKGDSAK ILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMV+F+S +
Sbjct: 61 AARAHDVALLSIKGDSAKPILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVDFDSTMPT 120
Query: 121 FSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEMIDSVDWWGNPPFAAAEMDFFPGFS 180
SSSNDEEGSDELGEIVELPNIEEEI AESWN+FE++DSVDWWGNPP+ AE DF GFS
Sbjct: 121 TSSSNDEEGSDELGEIVELPNIEEEISAESWNKFELVDSVDWWGNPPYTVAETDFVGGFS 180
Query: 181 DQSTIPVTFDGGD 194
QSTIPV FDGGD
Sbjct: 181 YQSTIPVIFDGGD 193
BLAST of Lag0031404 vs. NCBI nr
Match:
XP_022979607.1 (ethylene-responsive transcription factor TINY-like [Cucurbita maxima])
HSP 1 Score: 318.9 bits (816), Expect = 2.9e-83
Identity = 169/198 (85.35%), Postives = 180/198 (90.91%), Query Frame = 0
Query: 1 MAEPSNSNSESESTELKRVN---QKHPIYRGVRKRSWGKWVSEIRQPRKKTRIWLGTFTT 60
MAEP+N NSES+ E+KR N QKHPIYRGVRKRSWGKWVSEIRQPRKK+RIWLGTFTT
Sbjct: 1 MAEPNNWNSESDGAEMKRGNQRDQKHPIYRGVRKRSWGKWVSEIRQPRKKSRIWLGTFTT 60
Query: 61 AEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVEFN-S 120
AEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMV+F+ +
Sbjct: 61 AEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVDFDTT 120
Query: 121 MTASFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEMIDSVDWWGNPPFAAAEMDFF 180
TASFSSSNDE GSDELGEIVELPNIEE+IRAESW+EFE IDSVDWWGNPPF AAEMDF
Sbjct: 121 TTASFSSSNDEGGSDELGEIVELPNIEEDIRAESWSEFEFIDSVDWWGNPPFVAAEMDFC 180
Query: 181 PGFSDQS-TIPVTFDGGD 194
P F+DQS T TF+GGD
Sbjct: 181 PLFADQSTTTSATFNGGD 198
BLAST of Lag0031404 vs. NCBI nr
Match:
XP_023528290.1 (ethylene-responsive transcription factor TINY-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 318.2 bits (814), Expect = 5.0e-83
Identity = 170/198 (85.86%), Postives = 180/198 (90.91%), Query Frame = 0
Query: 1 MAEPSNSNSESESTELKRVN---QKHPIYRGVRKRSWGKWVSEIRQPRKKTRIWLGTFTT 60
MAEP+N NSES+ TELKR N QKHPIYRGVRKRSWGKWVSEIRQPRKK+RIWLGTFTT
Sbjct: 1 MAEPNNWNSESDGTELKRGNQRDQKHPIYRGVRKRSWGKWVSEIRQPRKKSRIWLGTFTT 60
Query: 61 AEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVEFN-S 120
AEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMV+F+ +
Sbjct: 61 AEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVDFDTT 120
Query: 121 MTASFSSSNDEEGSDELGEIVELPNIEEEIRAESWNEFEMIDSVDWWGNPPFAAAEMDFF 180
TASFSSSN E GSDELGEIVELPNIEE+IRAESW+EFE IDSVDWWGNPPF AAEMDF
Sbjct: 121 RTASFSSSNYEGGSDELGEIVELPNIEEDIRAESWSEFEFIDSVDWWGNPPFVAAEMDFC 180
Query: 181 PGFSDQS-TIPVTFDGGD 194
P F+DQS T TF+GGD
Sbjct: 181 PLFADQSTTTSATFNGGD 198
BLAST of Lag0031404 vs. ExPASy Swiss-Prot
Match:
Q39127 (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN=TINY PE=2 SV=1)
HSP 1 Score: 164.1 bits (414), Expect = 1.6e-39
Identity = 104/184 (56.52%), Postives = 117/184 (63.59%), Query Frame = 0
Query: 3 EPSNSNSESESTELKRVNQ--KHPIYRGVRKRSWGKWVSEIRQPRKKTRIWLGTFTTAEM 62
E S E+E + K V KHP+YRGVRKR+WGKWVSEIR+PRKK+RIWLGTF + EM
Sbjct: 11 EASAVRQENEEEKKKPVKDSGKHPVYRGVRKRNWGKWVSEIREPRKKSRIWLGTFPSPEM 70
Query: 63 AARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVEFNSMTAS 122
AARAHDVAALSIKG A AILNFP LAG PRP SL PRDIQ AA KAA M S ++S
Sbjct: 71 AARAHDVAALSIKG--ASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHMETSQSFSSS 130
Query: 123 ----FSSSNDEE-----------GSDELGEIVELPNIEEEI--RAESWNEFEMIDSVDWW 168
FSSS GS+ELGEIVELP++ + NEF DS D W
Sbjct: 131 SSLTFSSSQSSSSLESLVSSSATGSEELGEIVELPSLGSSYDGLTQLGNEFIFSDSADLW 190
BLAST of Lag0031404 vs. ExPASy Swiss-Prot
Match:
Q9LYD3 (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=DREB3 PE=2 SV=1)
HSP 1 Score: 161.8 bits (408), Expect = 7.9e-39
Identity = 99/187 (52.94%), Postives = 120/187 (64.17%), Query Frame = 0
Query: 1 MAEPSNSNSESESTELKRVNQKHPIYRGVRKRSWGKWVSEIRQPRKKTRIWLGTFTTAEM 60
+++ S + + T+ R + KHP+YRGVR R+WGKWVSEIR+PRKK+RIWLGTF T EM
Sbjct: 26 VSDKSKAEQSEKKTKRGRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEM 85
Query: 61 AARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVEFNSMTAS 120
AARAHDVAALSIKG + AILNFP+LA PRPVSL PRDIQ AA KAA M S ++S
Sbjct: 86 AARAHDVAALSIKGTA--AILNFPELADSFPRPVSLSPRDIQTAALKAAHMEPTTSFSSS 145
Query: 121 FSSSN-----------------DEEGSDELGEIVELPNIEEEIRAES---WNEFEMIDSV 168
SSS+ S+ELGEIVELP++ +S NEF DSV
Sbjct: 146 TSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNEFVFYDSV 205
BLAST of Lag0031404 vs. ExPASy Swiss-Prot
Match:
Q9LU18 (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana OX=3702 GN=ERF036 PE=2 SV=2)
HSP 1 Score: 154.8 bits (390), Expect = 9.7e-37
Identity = 100/199 (50.25%), Postives = 120/199 (60.30%), Query Frame = 0
Query: 2 AEPSNSNS----ESESTELKRVNQKHPIYRGVRKRSWGKWVSEIRQPRKKTRIWLGTFTT 61
A P N+N+ S+ + +HP+YRGVR RSWGKWVSEIRQPRKKTRIWLGTF T
Sbjct: 33 APPRNNNTRKRRRDSSSASSSSSMQHPVYRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVT 92
Query: 62 AEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMV----- 121
A+MAARAHDVAAL+IKG S A+LNFP+LA L PRP S P DIQ AAA+AAAMV
Sbjct: 93 ADMAARAHDVAALTIKGSS--AVLNFPELASLFPRPASSSPHDIQTAAAEAAAMVVEEKL 152
Query: 122 -------EFNSMTASFSSSNDEEGSDELGEIVELPNIEEEIRAESWN---EFEMIDSVDW 181
E + S + + E + L +IVELPNIEE ES + + D
Sbjct: 153 LEKDEAPEAPPSSESSYVAAESEDEERLEKIVELPNIEEGSYDESVTSRADLAYSEPFDC 212
BLAST of Lag0031404 vs. ExPASy Swiss-Prot
Match:
Q9M080 (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana OX=3702 GN=ERF043 PE=2 SV=1)
HSP 1 Score: 152.5 bits (384), Expect = 4.8e-36
Identity = 96/185 (51.89%), Postives = 118/185 (63.78%), Query Frame = 0
Query: 9 SESESTELKRVNQKHPIYRGVRKRSWGKWVSEIRQPRKKTRIWLGTFTTAEMAARAHDVA 68
++S S + K+ N K P+YRGVR RSWGKWVSEIR+PRKK+RIWLGTF TAEMA RAHDVA
Sbjct: 2 ADSSSDKEKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVA 61
Query: 69 ALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAM----------------V 128
A+SIKG S AILNFP+L+ LLPRPVSL PRD++AAA KAA M
Sbjct: 62 AMSIKGTS--AILNFPELSKLLPRPVSLSPRDVRAAATKAALMDFDTTAFRSDTETSETT 121
Query: 129 EFNSM--------TASFSSSN--------DEEGSDELGEIVELPNIEEEIRAESWNEFEM 162
N M T SFSSS+ + SD+L EIV+LP++ + NEF +
Sbjct: 122 TSNKMSESSESNETVSFSSSSWSSVTSIEESTVSDDLDEIVKLPSLGTSLNES--NEFVI 181
BLAST of Lag0031404 vs. ExPASy Swiss-Prot
Match:
Q52QU1 (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana OX=3702 GN=ERF042 PE=2 SV=1)
HSP 1 Score: 146.7 bits (369), Expect = 2.6e-34
Identity = 99/209 (47.37%), Postives = 125/209 (59.81%), Query Frame = 0
Query: 1 MAEPSNSNSESESTELKRVNQKHPIYRGVRKRSWGKWVSEIRQPRKKTRIWLGTFTTAEM 60
M + S++E S + K ++ +YRG R RSWGKWVSEIR+PRKK+RIWLGTF TAEM
Sbjct: 1 MVDSHGSDTECSSKKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEM 60
Query: 61 AARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAM----VEF-- 120
AARAHDVAALSIKG S AILNFP+LA LPRPVSL +DIQAAAA+AA M V F
Sbjct: 61 AARAHDVAALSIKGSS--AILNFPELADFLPRPVSLSQQDIQAAAAEAALMDFKTVPFHL 120
Query: 121 --------------------------NSMTASFSSSNDEEGSDELGEIVELPNIEEEIRA 176
+S ++S SSS+ S ELG+IVELP++E ++
Sbjct: 121 QDDSTPLQTRCDTEKIEKWSSSSSSASSSSSSSSSSSSSMLSGELGDIVELPSLENNVKY 180
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038906604.1 | 4.9e-86 | 85.07 | ethylene-responsive transcription factor TINY-like [Benincasa hispida] | [more] |
XP_022949201.1 | 3.5e-84 | 84.97 | ethylene-responsive transcription factor TINY-like [Cucurbita moschata] | [more] |
XP_022997866.1 | 7.8e-84 | 84.97 | ethylene-responsive transcription factor TINY-like [Cucurbita maxima] | [more] |
XP_022979607.1 | 2.9e-83 | 85.35 | ethylene-responsive transcription factor TINY-like [Cucurbita maxima] | [more] |
XP_023528290.1 | 5.0e-83 | 85.86 | ethylene-responsive transcription factor TINY-like [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Q39127 | 1.6e-39 | 56.52 | Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana OX=3702 GN... | [more] |
Q9LYD3 | 7.9e-39 | 52.94 | Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana OX=3702... | [more] |
Q9LU18 | 9.7e-37 | 50.25 | Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana OX=3702 ... | [more] |
Q9M080 | 4.8e-36 | 51.89 | Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana OX=3702 ... | [more] |
Q52QU1 | 2.6e-34 | 47.37 | Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana OX=3702 ... | [more] |