Lag0031378 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031378
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr11: 7767996 .. 7768298 (+)
RNA-Seq ExpressionLag0031378
SyntenyLag0031378
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGAAGCTAAGGCGATGTTGGAAGGGCTAAAAAACATTGTTCATTCCTGCAATCGAGATCAAATTCTGTTGGTTGTGGAATTGGATGCGCTAGGTGTAATCAGAGCGATTAACGACGATGAGGAAGACTTGTCGGACCTAAAAACCATCACGGATTCCATCTCCGCCATTGCCTCGTCAACTCACAATATTAAATTTCATCATTGTAGTAGGCTTTTGAACACATTAGTGCACTATGTTGCCAAATCGGCTTGTAACCCCTTGGTCGTCGATGAGCTTGAGAAGTCGATCGATTCTTAG

mRNA sequence

ATGCTTGAAGCTAAGGCGATGTTGGAAGGGCTAAAAAACATTGTTCATTCCTGCAATCGAGATCAAATTCTGTTGGTTGTGGAATTGGATGCGCTAGGTGTAATCAGAGCGATTAACGACGATGAGGAAGACTTGTCGGACCTAAAAACCATCACGGATTCCATCTCCGCCATTGCCTCGTCAACTCACAATATTAAATTTCATCATTGTAGTAGGCTTTTGAACACATTAGTGCACTATGTTGCCAAATCGGCTTGTAACCCCTTGGTCGTCGATGAGCTTGAGAAGTCGATCGATTCTTAG

Coding sequence (CDS)

ATGCTTGAAGCTAAGGCGATGTTGGAAGGGCTAAAAAACATTGTTCATTCCTGCAATCGAGATCAAATTCTGTTGGTTGTGGAATTGGATGCGCTAGGTGTAATCAGAGCGATTAACGACGATGAGGAAGACTTGTCGGACCTAAAAACCATCACGGATTCCATCTCCGCCATTGCCTCGTCAACTCACAATATTAAATTTCATCATTGTAGTAGGCTTTTGAACACATTAGTGCACTATGTTGCCAAATCGGCTTGTAACCCCTTGGTCGTCGATGAGCTTGAGAAGTCGATCGATTCTTAG

Protein sequence

MLEAKAMLEGLKNIVHSCNRDQILLVVELDALGVIRAINDDEEDLSDLKTITDSISAIASSTHNIKFHHCSRLLNTLVHYVAKSACNPLVVDELEKSIDS
Homology
The following BLAST results are available for this feature:
BLAST of Lag0031378 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0031378 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 3..85
e-value: 4.1E-9
score: 36.3
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..89
e-value: 5.7E-6
score: 28.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031378.1Lag0031378.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity