Lag0031357 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031357
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr11: 7465528 .. 7465941 (+)
RNA-Seq ExpressionLag0031357
SyntenyLag0031357
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTCTCAAATGCCAATAGGCCATTTCAATCTGCTACATCTTCTTCTGGAGGTAAGGGATCTCAGTCTAACTCCTTTCCTTTTCCCATTTCAACACCTGGACTCTTGGGAAAACCCCACCACCGCAACCCCTTTCAACAACAAAAGTGGCCTAAAGGCCAAGGGTCCTCTGCTAAGCCCATATGTAAAATATGTGGGAAGACAGGGCACACTGCCTTAGTTTTTTATCAACGTGCCAACCTCTCCTTTCAACCTTCTCCAAATCCACAACCACAAGCTCATTTTACCCAAATCCAAAATTCCAACCCTCCCATTCTACCTTCACCGCCTATATCAACCAACCCATCGACCTCAACCAGTACACACCCCGACGATTCATGGTTCATGGATTCAGGGCTACTCATCATATGA

mRNA sequence

ATGGGTTTCTCAAATGCCAATAGGCCATTTCAATCTGCTACATCTTCTTCTGGAGGTAAGGGATCTCAGTCTAACTCCTTTCCTTTTCCCATTTCAACACCTGGACTCTTGGGAAAACCCCACCACCGCAACCCCTTTCAACAACAAAAGTGGCCTAAAGGCCAAGGGTCCTCTGCTAAGCCCATATGTAAAATATGTGGGAAGACAGGGCACACTGCCTTAGTTTTTTATCAACGTGCCAACCTCTCCTTTCAACCTTCTCCAAATCCACAACCACAAGCTCATTTTACCCAAATCCAAAATTCCAACCCTCCCATTCTACCTTCACCGCCTATATCAACCAACCCATCGACCTCAACCAGTACACACCCCGACGATTCATGGTTCATGGATTCAGGGCTACTCATCATATGA

Coding sequence (CDS)

ATGGGTTTCTCAAATGCCAATAGGCCATTTCAATCTGCTACATCTTCTTCTGGAGGTAAGGGATCTCAGTCTAACTCCTTTCCTTTTCCCATTTCAACACCTGGACTCTTGGGAAAACCCCACCACCGCAACCCCTTTCAACAACAAAAGTGGCCTAAAGGCCAAGGGTCCTCTGCTAAGCCCATATGTAAAATATGTGGGAAGACAGGGCACACTGCCTTAGTTTTTTATCAACGTGCCAACCTCTCCTTTCAACCTTCTCCAAATCCACAACCACAAGCTCATTTTACCCAAATCCAAAATTCCAACCCTCCCATTCTACCTTCACCGCCTATATCAACCAACCCATCGACCTCAACCAGTACACACCCCGACGATTCATGGTTCATGGATTCAGGGCTACTCATCATATGA

Protein sequence

MGFSNANRPFQSATSSSGGKGSQSNSFPFPISTPGLLGKPHHRNPFQQQKWPKGQGSSAKPICKICGKTGHTALVFYQRANLSFQPSPNPQPQAHFTQIQNSNPPILPSPPISTNPSTSTSTHPDDSWFMDSGLLII
Homology
BLAST of Lag0031357 vs. NCBI nr
Match: CAN77126.1 (hypothetical protein VITISV_013628 [Vitis vinifera])

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-08
Identity = 48/112 (42.86%), Postives = 59/112 (52.68%), Query Frame = 0

Query: 30  PISTPGLLGKPHHRNPFQQQKWPKGQGS---SAKPICKICGKTGHTALVFYQRANLSFQP 89
           P S P +LGKP  + P    KW + QG+     +P C+ICGK GH AL  Y RANL++QP
Sbjct: 208 PNSQPSILGKPQGQ-PQSSSKWFQKQGTGNFGPRPQCQICGKFGHMALNCYHRANLNYQP 267

Query: 90  SPNPQPQAHFTQIQNSNPPILPSPPISTNPSTSTS-THP----DDSWFMDSG 134
                      Q  NS P   P  PI+   +TSTS T P    D  W+MDSG
Sbjct: 268 -----------QFPNSQPKPQPPNPIAAMLTTSTSPTMPFNNCDTPWYMDSG 307

BLAST of Lag0031357 vs. NCBI nr
Match: XP_022148871.1 (uncharacterized protein LOC111017438 [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-07
Identity = 50/126 (39.68%), Postives = 60/126 (47.62%), Query Frame = 0

Query: 22  SQSNSFPFPIST-PGLLGKPHHRNPFQQQKWPKGQGSSAKP--ICKICGKTGHTALVFYQ 81
           SQ +  PF   T PGLLGKP   N   Q  WP  Q S   P   C+IC K GHT    Y 
Sbjct: 121 SQHSPRPFNFKTQPGLLGKP---NQNSQPPWPPSQQSPRNPKVQCQICFKLGHTTSKCYH 180

Query: 82  RAN----LSFQPSPNPQPQAHFTQIQNSNPPILPSPPISTNPST-------STSTHPDDS 134
           RAN    L+F P+  P P A F  + +S+     S P +  P T       +    PDD 
Sbjct: 181 RANLQYKLNFFPTNQPNPHALFHHVNSSSSQFQQSNPTANVPPTPNPFSFPNLIVIPDDL 240

BLAST of Lag0031357 vs. NCBI nr
Match: GFY82848.1 (hypothetical protein Acr_02g0010880 [Actinidia rufa])

HSP 1 Score: 65.1 bits (157), Expect = 5.4e-07
Identity = 47/116 (40.52%), Postives = 58/116 (50.00%), Query Frame = 0

Query: 20  KGSQSNSFPFPISTPGLLGKPHHRNPFQQQKWPKGQGSSAKPICKICGKTGHTALVFYQR 79
           K   +NSFP   S     G+  +RNP      P       +P C+IC K GHTA   Y R
Sbjct: 153 KNPSTNSFPNSNSYSHPRGQ--NRNPSYS---PNPSSPKPRPRCQICLKPGHTANKCYHR 212

Query: 80  ANLSFQPSPNPQPQAHFTQIQNSNPPILPSPPIST--NPSTSTSTHPDDSWFMDSG 134
            NL++QP P P         +N N  I P+P IST  N   S S+ PD SW+MDSG
Sbjct: 213 TNLNYQPPPPPP--------RNFNAYITPNPSISTSSNQPASASSLPDSSWYMDSG 255

BLAST of Lag0031357 vs. NCBI nr
Match: RVW77188.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 64.7 bits (156), Expect = 7.1e-07
Identity = 39/101 (38.61%), Postives = 56/101 (55.45%), Query Frame = 0

Query: 36  LLGKPHHRNPFQQQKW-PKGQGSSAKPICKICGKTGHTALVFYQRANLSFQPSPNPQ--P 95
           +LGKP  +    Q +W P     + KP C+ICGK GH AL+ +   NL++ P P+P+   
Sbjct: 170 ILGKPQPQPRQPQPQWKPHFSIQNQKPQCQICGKFGHIALICFHHTNLNYSPQPSPKYFN 229

Query: 96  QAHFTQIQNSNPPILPSPPISTNPSTSTSTHPDDSWFMDSG 134
               T  Q SNPP   S P   + + + +T PD +W+MDSG
Sbjct: 230 TVLTTNSQLSNPPEF-SYPAMAHLAATHNTVPDTNWYMDSG 269

BLAST of Lag0031357 vs. NCBI nr
Match: XP_022155181.1 (uncharacterized protein LOC111022315 [Momordica charantia])

HSP 1 Score: 64.7 bits (156), Expect = 7.1e-07
Identity = 50/130 (38.46%), Postives = 67/130 (51.54%), Query Frame = 0

Query: 5   NANRPFQSATSSSGGKGSQSNSFPFPISTPGLLGKPHHRNPFQQQKWPKGQGSSAKPICK 64
           N+ RP    +  +  K S  NS      +  +LGKP         KWP  + SS+K  C+
Sbjct: 241 NSKRPPPKFSFPNHYKHSFPNSPISAAQSQSILGKPQ-----SVHKWPP-KPSSSKIQCQ 300

Query: 65  ICGKTGHTALVFYQRANLSFQPSPNPQPQAHFTQIQNSNPPILPSPPISTNPSTSTS-TH 124
           ICGK GH+A V Y R N+++    N  PQA +  +Q       PSP   T+PS+     H
Sbjct: 301 ICGKLGHSAAVCYHRTNIAYH---NASPQALYHHVQ-------PSP---THPSSGHEFQH 351

Query: 125 PDDSWFMDSG 134
           PD+SWFMDSG
Sbjct: 361 PDESWFMDSG 351

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAN77126.14.9e-0842.86hypothetical protein VITISV_013628 [Vitis vinifera][more]
XP_022148871.11.9e-0739.68uncharacterized protein LOC111017438 [Momordica charantia][more]
GFY82848.15.4e-0740.52hypothetical protein Acr_02g0010880 [Actinidia rufa][more]
RVW77188.17.1e-0738.61Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
XP_022155181.17.1e-0738.46uncharacterized protein LOC111022315 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..103

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031357.1Lag0031357.1mRNA