Lag0031282 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031282
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr11: 6589782 .. 6591789 (+)
RNA-Seq ExpressionLag0031282
SyntenyLag0031282
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCGACGGCGACCAGAGCCTTGAAAATCGGCGTTCCGGCTCCGGCCAAACCAGAGAAGAAGCCGGCGAACTTCTCAAGGCTCACATTTCGCTATCCAAATAGCTTTCTCCATACGTGGCCGAAATTTTCTGCCGTTCGAGCACTCGACCCCCAAAGCAGAGGACAAGGGGGCACTTCGAGCGGCGGCCAAGATGCCGACGCCGGCGGTTTCATCAATCAGGTGTGTGTTTTCGCCAATTGTCTTCTATTTCAGTATAAGAACATACGCTTTGCAAATTGCTGTTCCGAACTAGTAATTCGAGGGCTAATTGGCTGAATTTAGGTCGTTGAATGGGGGAGAAATCAACAGAATCCTATAACTGGCCACGTTTTAGGCTTTAGCATTGTATATTTGGTTAATCTCTGGCAAGATTCAAGAAGTTCCTTTAATTGAATAGGATGAGGAATTCTGGAATTGAGTAAACCGGCTGCATCGTTTTCTTGTTAAGTTGATTGAGTTACTCTCGTCTTGTCAAATATCAAACCTGGAAAAATCATGGATTAAAATTTTGAAACATTGGCTCATAGGTGTAGGAACACCTTCAACTTACACGATGATTTATCTGATGCAGTCTCAATCGAATACAATTCAATTTTAGACCAGTTCCGTTCAATATTATCATCATAATTCAATTGATTCGAAATGATTATGAATTCTCTAGGAGGACCCCTTTTTATTTTTATGTTCTTATCTATGTAATTAATAATCATGGGGAAATATCTGAAACTAATGTTTTCCAACTCTTATTTTGTGGAGTTTACTTCTGCTTAAATTTAAACTAATCAAACAAAATCAAACCAATGTCAGTCTATCTGACAGGGTTTGATTCGTTTGAATAATTTTACTTCACTTTTAACCATACTAGCTGCATTTGGTGATAATATAATCTGACATATGAGTCAGACTCCCATTGGTAATTTGCTCTTTGAGAAGGTAGCCACTATTTAGACCTCGTTTGATATCCATTTGGTTTTTTTGTTTTTGAAAATTATGTTAGTTTTCAATCAATTATCTTACAATGGTTTTCATGACATTTGAATTCTTAATCAAATTCCAAAAAAGAAAAAGTAAGTTTGAAATGGGAAGAAGGTAGATAACAAAACAAGAAAACTTATACGTGGAAGTAGTGTTTATAAGTTTAATTTCCAAAAAACAAAAACCAAATGGTTATCAAACAAGACCTTAGTTAAATTAGTACTTGTTTTCCAAACATTACATATTTAGACAGGATTGAGTTTTTTAAAGTAGTATTTTGTTTCTTCATTGTTTTGGAGTAGACAAATCTCCCCTTTTTGTAATTATCCTTTATCTTCCCTTATATCTCAATGAAGATCTCTCTTATAATTGATCGATAGGCCTTTTGTATCTATTTCACATATCAATGAAATGACTCTCGTTTCCTATAATATATATATATATATTTATTTATTTTTTTTCTTCATAATGGAGTGTTTGGTTTATGAGGTACCTGAAACCATGAAATAATATTATTTCATTCCATATGTATGATGTTGACTCATTTCTCTGCAGAAGACAAGCCTTAAAAGTAGTTCAATTTTTTTTTTTTTTTTAATAATGTGTCCTAACTTTTGTTGAAAAAAAAAATGAAAGAATACAAGAAGTCGAGAGGGGAAATAAAAATAAAAAATAAAACCCAAACAACAAGGAGCCCTAGAAGTAGTTTGTCTCCCCAACCCTCTAAATTTATCCAAGAGGATGCTGATACAGCAACATTTCCTTCCCTTTTTTCACTTGACTCTGTACCATGCAGGAGGATGTGCAATTTTTGTTGAAACTAGTGGCAGGTTCCATAGCAGGAGGAGCTGGAATAAAGTATGGAAGCATAATCTTTCCAGAGATAACCAAACCCAACATTGTACAGGCTCTTATTATGATATCAACTCCTGTTATTGTAGCCATATGGCTTTTGATAAAGCAGGGTCGTGAAGAGAAACAAAGCTGA

mRNA sequence

ATGGCAGCGACGGCGACCAGAGCCTTGAAAATCGGCGTTCCGGCTCCGGCCAAACCAGAGAAGAAGCCGGCGAACTTCTCAAGGCTCACATTTCGCTATCCAAATAGCTTTCTCCATACGTGGCCGAAATTTTCTGCCGTTCGAGCACTCGACCCCCAAAGCAGAGGACAAGGGGGCACTTCGAGCGGCGGCCAAGATGCCGACGCCGGCGGTTTCATCAATCAGGAGGATGTGCAATTTTTGTTGAAACTAGTGGCAGGTTCCATAGCAGGAGGAGCTGGAATAAAGTATGGAAGCATAATCTTTCCAGAGATAACCAAACCCAACATTGTACAGGCTCTTATTATGATATCAACTCCTGTTATTGTAGCCATATGGCTTTTGATAAAGCAGGGTCGTGAAGAGAAACAAAGCTGA

Coding sequence (CDS)

ATGGCAGCGACGGCGACCAGAGCCTTGAAAATCGGCGTTCCGGCTCCGGCCAAACCAGAGAAGAAGCCGGCGAACTTCTCAAGGCTCACATTTCGCTATCCAAATAGCTTTCTCCATACGTGGCCGAAATTTTCTGCCGTTCGAGCACTCGACCCCCAAAGCAGAGGACAAGGGGGCACTTCGAGCGGCGGCCAAGATGCCGACGCCGGCGGTTTCATCAATCAGGAGGATGTGCAATTTTTGTTGAAACTAGTGGCAGGTTCCATAGCAGGAGGAGCTGGAATAAAGTATGGAAGCATAATCTTTCCAGAGATAACCAAACCCAACATTGTACAGGCTCTTATTATGATATCAACTCCTGTTATTGTAGCCATATGGCTTTTGATAAAGCAGGGTCGTGAAGAGAAACAAAGCTGA

Protein sequence

MAATATRALKIGVPAPAKPEKKPANFSRLTFRYPNSFLHTWPKFSAVRALDPQSRGQGGTSSGGQDADAGGFINQEDVQFLLKLVAGSIAGGAGIKYGSIIFPEITKPNIVQALIMISTPVIVAIWLLIKQGREEKQS
Homology
BLAST of Lag0031282 vs. NCBI nr
Match: XP_022153461.1 (uncharacterized protein LOC111020963 [Momordica charantia])

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-53
Identity = 109/137 (79.56%), Postives = 121/137 (88.32%), Query Frame = 0

Query: 2   AATATRALKIGVPAPAKPEKKPANFSRLTFRYPNSFLHTWPKFSAVRALDPQSRGQGGTS 61
           AATAT ALKIG+PAP KPEKK  NF+RLT RYPN  L+TWPK SA+RALDP++RG+GG S
Sbjct: 5   AATATGALKIGIPAPVKPEKKATNFTRLTVRYPNCTLNTWPKVSAIRALDPETRGEGGNS 64

Query: 62  SGGQDADAGGFINQEDVQFLLKLVAGSIAGGAGIKYGSIIFPEITKPNIVQALIMISTPV 121
           SG  D  AG FINQEDVQFLLKLVAGSIAGGAGIKYGSIIFP+I KPN+VQALIMISTPV
Sbjct: 65  SGSDDTGAGDFINQEDVQFLLKLVAGSIAGGAGIKYGSIIFPDIAKPNLVQALIMISTPV 124

Query: 122 IVAIWLLIKQGREEKQS 139
           ++AIWLLIKQ REE+QS
Sbjct: 125 VLAIWLLIKQSREERQS 141

BLAST of Lag0031282 vs. NCBI nr
Match: XP_038902938.1 (uncharacterized protein LOC120089511 [Benincasa hispida])

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-47
Identity = 105/137 (76.64%), Postives = 112/137 (81.75%), Query Frame = 0

Query: 2   AATATRALKIGVPAPAKPEKKPANFSRLTFRYPNSFLHTWPKFSAVRALDPQSRGQGGTS 61
           A T T ALKIG+PAPAK EKKP NF+RLT RYPN FL+T  KF A+RAL     GQGG  
Sbjct: 4   AVTTTGALKIGIPAPAKSEKKPTNFARLTVRYPNCFLNTRLKFPAIRAL-----GQGGNP 63

Query: 62  SGGQDADAGGFINQEDVQFLLKLVAGSIAGGAGIKYGSIIFPEITKPNIVQALIMISTPV 121
           SG  D DAGGFINQEDVQFLLKL AGSIAGG GIKYGSIIFPE+TKPNIVQALIMIS PV
Sbjct: 64  SGNDDTDAGGFINQEDVQFLLKLAAGSIAGGCGIKYGSIIFPEMTKPNIVQALIMISAPV 123

Query: 122 IVAIWLLIKQGREEKQS 139
           +VAIWLLI Q REE+QS
Sbjct: 124 VVAIWLLINQSREERQS 135

BLAST of Lag0031282 vs. NCBI nr
Match: XP_004152177.2 (uncharacterized protein LOC101209077 isoform X1 [Cucumis sativus] >KGN52937.1 hypothetical protein Csa_014893 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 4.7e-43
Identity = 105/146 (71.92%), Postives = 110/146 (75.34%), Query Frame = 0

Query: 3   ATATRALKIGVPAP----------AKPEKKPANFSRLTFRYPNSFLHTWPKFSAVRALDP 62
           ATAT  LKIGVPAP          AK  + P NF+ LT RYPN FL+T  KF AVRAL  
Sbjct: 5   ATATGVLKIGVPAPAPAPAPPPLKAKSGRHPTNFASLTMRYPNYFLNTRMKFPAVRAL-- 64

Query: 63  QSRGQGGTSSGGQDADAGGFINQEDVQFLLKLVAGSIAGGAGIKYGSIIFPEITKPNIVQ 122
              GQGG  SG  D DAGGFINQEDV+FLLKL AGSIAGG GIKYGSIIFPEITKPNIVQ
Sbjct: 65  ---GQGGNPSGDDDNDAGGFINQEDVEFLLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQ 124

Query: 123 ALIMISTPVIVAIWLLIKQGREEKQS 139
           ALIMISTPV+VAIWLLIKQ REE QS
Sbjct: 125 ALIMISTPVVVAIWLLIKQSREETQS 145

BLAST of Lag0031282 vs. NCBI nr
Match: XP_008454177.1 (PREDICTED: uncharacterized protein LOC103494660 [Cucumis melo] >XP_016901530.1 PREDICTED: uncharacterized protein LOC103494660 [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-41
Identity = 101/138 (73.19%), Postives = 107/138 (77.54%), Query Frame = 0

Query: 3   ATATRALKIGVPAP--AKPEKKPANFSRLTFRYPNSFLHTWPKFSAVRALDPQSRGQGGT 62
           ATAT  LK G PAP  AK  +   NF+RLT RYPN FL+T  KF A+RAL     GQGG 
Sbjct: 5   ATATGVLKFGAPAPVKAKSGRHLTNFARLTVRYPNYFLNTRMKFPALRAL-----GQGGK 64

Query: 63  SSGGQDADAGGFINQEDVQFLLKLVAGSIAGGAGIKYGSIIFPEITKPNIVQALIMISTP 122
            SG  D DAGGFINQEDV+F LKL AGSIAGG GIKYGSIIFPEITKPNIVQALIMISTP
Sbjct: 65  PSGNDDNDAGGFINQEDVEFFLKLGAGSIAGGFGIKYGSIIFPEITKPNIVQALIMISTP 124

Query: 123 VIVAIWLLIKQGREEKQS 139
           V+VAIWLLIKQ REE QS
Sbjct: 125 VVVAIWLLIKQSREETQS 137

BLAST of Lag0031282 vs. NCBI nr
Match: XP_022955512.1 (uncharacterized protein LOC111457518 isoform X1 [Cucurbita moschata] >KAG7018380.1 hypothetical protein SDJN02_20248 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.0 bits (432), Expect = 7.1e-39
Identity = 99/141 (70.21%), Postives = 111/141 (78.72%), Query Frame = 0

Query: 1   MAAT--ATRALKIGVPAPAKPEKK-PANFSRLTFRYPNSFLHTWPKFSAVRALDPQSRGQ 60
           MAAT  AT A KIGVPAP K EKK P NF+RLT RYPN FL+T PK  A+RAL     GQ
Sbjct: 1   MAATAAATGAWKIGVPAPVKSEKKPPTNFTRLTVRYPNCFLNTRPKVPAIRAL-----GQ 60

Query: 61  GGTSSGGQDADAGGFINQEDVQFLLKLVAGSIAGGAGIKYGSIIFPEITKPNIVQALIMI 120
            G SSGG D D G  I+QEDVQF+LK+ AGSIA G GIKYGSIIFPE+TKPNIVQALIM+
Sbjct: 61  EGNSSGGDD-DTG--ISQEDVQFVLKMAAGSIAVGGGIKYGSIIFPEMTKPNIVQALIMV 120

Query: 121 STPVIVAIWLLIKQGREEKQS 139
           STPV+VAIWLLI Q R+++QS
Sbjct: 121 STPVVVAIWLLINQSRQDRQS 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022153461.11.3e-5379.56uncharacterized protein LOC111020963 [Momordica charantia][more]
XP_038902938.11.1e-4776.64uncharacterized protein LOC120089511 [Benincasa hispida][more]
XP_004152177.24.7e-4371.92uncharacterized protein LOC101209077 isoform X1 [Cucumis sativus] >KGN52937.1 hy... [more]
XP_008454177.11.2e-4173.19PREDICTED: uncharacterized protein LOC103494660 [Cucumis melo] >XP_016901530.1 P... [more]
XP_022955512.17.1e-3970.21uncharacterized protein LOC111457518 isoform X1 [Cucurbita moschata] >KAG7018380... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..68
NoneNo IPR availablePANTHERPTHR37224OS02G0804400 PROTEINcoord: 19..137
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 66..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031282.1Lag0031282.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane