Lag0031279 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031279
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon protein
Locationchr11: 6550025 .. 6550526 (+)
RNA-Seq ExpressionLag0031279
SyntenyLag0031279
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCATATTCATATTGCAGAATGATCAGTTCATCCACAACCCTGAAGCACACCTGGACGAAAATCAAGGAGCGAAGCTAGGGGAGTGCCTCGTGTCCTTTGTCCAAGCTAGAGGTTGGAGGTTTGATAATGGGACTTTTAGACCTGGGTATTTGCCGCAACTGGAGCGTATGATGAAGGAGAAATTGCCTGAACACAAAGTTCCAACGTTGGATGCAGGGTTCGAACCCTAAAGCAACAGTATTGGGCGATTGCAGAAATGATGAGGCCCAGATGCAACGACTTTGGGTGGAACGATGAATTCAAGTGTATCGAGGCAGAGAAGAAAACATTCGACCTGTGGGTGAAGGTAAGAACGTGTTGTCATGTTAATTAAACATTGTTTATCGCTTTCTAACATGTACTTTTGGGTAAATGTAGGCCCATCCTATTGCAAAAGGCATGCGAAATAAGTCGTTCCTGCATTTTGACGACTTGGCCTATGCATTCAGAAAGGATTGA

mRNA sequence

ATGTGCATATTCATATTGCAGAATGATCAGTTCATCCACAACCCTGAAGCACACCTGGACGAAAATCAAGGAGCGAAGCTAGGGGAGTGCCTCGTGTCCTTTGTCCAAGCTAGAGGTTGGAGGTTTGATAATGGGACTTTTAGACCTGGGGTTCGAACCCTAAAGCAACAGTATTGGGCGATTGCAGAAATGATGAGGCCCAGATGCAACGACTTTGGGTGGAACGATGAATTCAAGTGTATCGAGGCAGAGAAGAAAACATTCGACCTGTGGGTGAAGGCCCATCCTATTGCAAAAGGCATGCGAAATAAGTCGTTCCTGCATTTTGACGACTTGGCCTATGCATTCAGAAAGGATTGA

Coding sequence (CDS)

ATGTGCATATTCATATTGCAGAATGATCAGTTCATCCACAACCCTGAAGCACACCTGGACGAAAATCAAGGAGCGAAGCTAGGGGAGTGCCTCGTGTCCTTTGTCCAAGCTAGAGGTTGGAGGTTTGATAATGGGACTTTTAGACCTGGGGTTCGAACCCTAAAGCAACAGTATTGGGCGATTGCAGAAATGATGAGGCCCAGATGCAACGACTTTGGGTGGAACGATGAATTCAAGTGTATCGAGGCAGAGAAGAAAACATTCGACCTGTGGGTGAAGGCCCATCCTATTGCAAAAGGCATGCGAAATAAGTCGTTCCTGCATTTTGACGACTTGGCCTATGCATTCAGAAAGGATTGA

Protein sequence

MCIFILQNDQFIHNPEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPGVRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTFDLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD
Homology
BLAST of Lag0031279 vs. NCBI nr
Match: KAA0035413.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 3.7e-28
Identity = 61/100 (61.00%), Postives = 74/100 (74.00%), Query Frame = 0

Query: 21  ENQGAKLGECLVSFVQARGWRFDNGTFRPG-VRTLKQQYWAIAEMMRPRCNDFGWNDEFK 80
           + + A L ECLV  V A GWR DNGTFRPG ++ LK+ + AIAEM  P C+ FGWNDE K
Sbjct: 120 KEEEAGLVECLVELVNAGGWRSDNGTFRPGRIKLLKRMFHAIAEMCGPTCSRFGWNDEQK 179

Query: 81  CIEAEKKTFDLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD 120
           CI AEK+ FD WVK+HP AKG+ NKSF H+D+L+Y F KD
Sbjct: 180 CIVAEKEVFDNWVKSHPTAKGLLNKSFPHYDELSYVFGKD 219

BLAST of Lag0031279 vs. NCBI nr
Match: KAA0057175.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK18787.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 4.5e-26
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 0

Query: 21  ENQGAKLGECLVSFVQARGWRFDNGTFRPG-VRTLKQQYWAIAEMMRPRCNDFGWNDEFK 80
           + + A L ECLV  V A GWR DNG FRPG ++ +K+ + A+AEM  P C+ FGWNDE K
Sbjct: 14  KEEEAGLVECLVELVNAGGWRSDNGAFRPGRIKLMKRMFHALAEMRGPTCSGFGWNDEQK 73

Query: 81  CIEAEKKTFDLWVKAHPIAKGMRNKSFLHFDDLAYAFRKD 120
           CI AEK+ FD WVK+H   KG+ NKSF H+D+L+Y F KD
Sbjct: 74  CIVAEKEVFDDWVKSHQTVKGLLNKSFFHYDELSYVFGKD 113

BLAST of Lag0031279 vs. NCBI nr
Match: KAA0047075.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 126.3 bits (316), Expect = 1.7e-25
Identity = 59/131 (45.04%), Postives = 77/131 (58.78%), Query Frame = 0

Query: 15  PEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPG------------------------ 74
           P+    + + A L ECLV  V A GWR DNGTFRPG                        
Sbjct: 8   PKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTID 67

Query: 75  --VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTFDLWVKAHPIAKGMRNKSFLH 120
             ++ +K+ + A+AEM  P C+ FGWNDE KCI  EK+ FD WVK+HP+AKG+ NKSF+H
Sbjct: 68  SRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPMAKGLLNKSFVH 127

BLAST of Lag0031279 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 2.9e-25
Identity = 59/131 (45.04%), Postives = 76/131 (58.02%), Query Frame = 0

Query: 15  PEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPG------------------------ 74
           P+    + + A L ECLV  V A GWR DNGTFRPG                        
Sbjct: 8   PKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTID 67

Query: 75  --VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTFDLWVKAHPIAKGMRNKSFLH 120
             ++ +K+ + A+AEM  P C+ FGWNDE KCI  EK+ FD WVK+HP AKG+ NKSF+H
Sbjct: 68  SRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGLLNKSFVH 127

BLAST of Lag0031279 vs. NCBI nr
Match: KAA0041617.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK19640.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 6.6e-25
Identity = 61/131 (46.56%), Postives = 75/131 (57.25%), Query Frame = 0

Query: 15  PEAHLDENQGAKLGECLVSFVQARGWRFDNGTFRPG------------------------ 74
           P+ +  + + A L ECLV  V A GWRFDNGTFRPG                        
Sbjct: 8   PKHNWTKEEEAGLVECLVELVNAGGWRFDNGTFRPGYLNQLASMMAFKIPSSNVHASTID 67

Query: 75  --VRTLKQQYWAIAEMMRPRCNDFGWNDEFKCIEAEKKTFDLWVKAHPIAKGMRNKSFLH 120
             ++ LK+ + AI EM    C+ FGWNDE KCI AEK+ FD WVK+H  AKG+ NKSFLH
Sbjct: 68  NRIKLLKRMFHAIPEMCSSTCSGFGWNDEQKCIVAEKEVFDDWVKSHSAAKGLLNKSFLH 127

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0035413.13.7e-2861.00retrotransposon protein [Cucumis melo var. makuwa] >TYK25738.1 retrotransposon p... [more]
KAA0057175.14.5e-2656.00retrotransposon protein [Cucumis melo var. makuwa] >TYK18787.1 retrotransposon p... [more]
KAA0047075.11.7e-2545.04retrotransposon protein [Cucumis melo var. makuwa][more]
TYK05082.12.9e-2545.04retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0041617.16.6e-2546.56retrotransposon protein [Cucumis melo var. makuwa] >TYK19640.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 51..119
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 51..119

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031279.1Lag0031279.1mRNA