Lag0031258 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031258
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	NAC domain-containing protein
Location	chr11: 6366677 .. 6367162 (+)
RNA-Seq Expression	Lag0031258
Synteny	Lag0031258

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACCGCGTAATTCCGGTCATCGACATTTACACCATTGAGCCATCCAATCTCTCCAGTACGTACTTGGATATACTAATTATTTTTTTTAAATAACTTTATATAATTAATTAAGTGATTATTTATTTATGGGTTTTATTTATTTTTGTTGCAGGGTGTTCCGAGGAGTGGTGTAGGAGGGATAGTGAGCAGTGGTTTTACTTTGTGAAGCACCAAGAGAGGGAAGCGAGGCGACACGTTTGGCTTTTCTTGAACGAATTTCATGATCTTCCGCCATACTTTCTCAGAACGACGTCGTCTGGATCTGGGTATTGGAAGGCCACCGACTCATCGGGCTATGTCTACTCCTCCGACAATAGGGTCATCGGAGTTAAGAAAACGATGGTGTTTTACAGAGGGAAAGCTCCCACTGGAAGAAAGACAAAGTGGAAGATGAACGAATATAAAACCCAATCCCAACGAAATTTTAGGGTTTTTTTTTTTTAA

mRNA sequence

ATGCACCGCGTAATTCCGGTCATCGACATTTACACCATTGAGCCATCCAATCTCTCCAGGTGTTCCGAGGAGTGGTGTAGGAGGGATAGTGAGCAGTGGTTTTACTTTGTGAAGCACCAAGAGAGGGAAGCGAGGCGACACGTTTGGCTTTTCTTGAACGAATTTCATGATCTTCCGCCATACTTTCTCAGAACGACGTCGTCTGGATCTGGGTATTGGAAGGCCACCGACTCATCGGGCTATGTCTACTCCTCCGACAATAGGGTCATCGGAGTTAAGAAAACGATGGTGTTTTACAGAGGGAAAGCTCCCACTGGAAGAAAGACAAAGTGGAAGATGAACGAATATAAAACCCAATCCCAACGAAATTTTAGGGTTTTTTTTTTTTAA

Coding sequence (CDS)

ATGCACCGCGTAATTCCGGTCATCGACATTTACACCATTGAGCCATCCAATCTCTCCAGGTGTTCCGAGGAGTGGTGTAGGAGGGATAGTGAGCAGTGGTTTTACTTTGTGAAGCACCAAGAGAGGGAAGCGAGGCGACACGTTTGGCTTTTCTTGAACGAATTTCATGATCTTCCGCCATACTTTCTCAGAACGACGTCGTCTGGATCTGGGTATTGGAAGGCCACCGACTCATCGGGCTATGTCTACTCCTCCGACAATAGGGTCATCGGAGTTAAGAAAACGATGGTGTTTTACAGAGGGAAAGCTCCCACTGGAAGAAAGACAAAGTGGAAGATGAACGAATATAAAACCCAATCCCAACGAAATTTTAGGGTTTTTTTTTTTTAA

Protein sequence

MHRVIPVIDIYTIEPSNLSRCSEEWCRRDSEQWFYFVKHQEREARRHVWLFLNEFHDLPPYFLRTTSSGSGYWKATDSSGYVYSSDNRVIGVKKTMVFYRGKAPTGRKTKWKMNEYKTQSQRNFRVFFF

Homology

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BLAST of Lag0031258 vs. NCBI nr
Match: XP_023533663.1 (NAC domain-containing protein 90 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 168.3 bits (425), Expect = 4.3e-38
Identity = 87/117 (74.36%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1   MHRVIPVIDIYTIEPSNLSRCSEEWCRRDSEQWFYFVKHQEREARRHVWLFLNEFHDLPP 60
           +HRVIPV+DIY+IEP NLS CS E CRRDSEQWF+FVK QEREAR             P 
Sbjct: 46  IHRVIPVVDIYSIEPFNLSGCSGERCRRDSEQWFFFVKQQEREAR----------GGRPN 105

Query: 61  YFLRTTSSGSGYWKATDSSGYVYSSDNRVIGVKKTMVFYRGKAPTGRKTKWKMNEYK 118
              RTTSSGSGYWKAT S  YVYSSDNRVIGVKKTMVFYRGKAPTG KTKWKMNEYK
Sbjct: 106 ---RTTSSGSGYWKATGSPSYVYSSDNRVIGVKKTMVFYRGKAPTGTKTKWKMNEYK 149

[Close]

BLAST of Lag0031258 vs. NCBI nr
Match: XP_022958454.1 (NAC domain-containing protein 90 [Cucurbita moschata] >KAG6605975.1 NAC domain-containing protein 90, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035927.1 NAC domain-containing protein 90, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 168.3 bits (425), Expect = 4.3e-38
Identity = 87/117 (74.36%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1   MHRVIPVIDIYTIEPSNLSRCSEEWCRRDSEQWFYFVKHQEREARRHVWLFLNEFHDLPP 60
           +HRVIPV+DIY+IEP NLS CS E CRRDSEQWF+FVK QEREAR             P 
Sbjct: 46  IHRVIPVVDIYSIEPFNLSGCSGERCRRDSEQWFFFVKQQEREAR----------GGRPN 105

Query: 61  YFLRTTSSGSGYWKATDSSGYVYSSDNRVIGVKKTMVFYRGKAPTGRKTKWKMNEYK 118
              RTTSSGSGYWKAT S  YVYSSDNRVIGVKKTMVFYRGKAPTG KTKWKMNEYK
Sbjct: 106 ---RTTSSGSGYWKATGSPSYVYSSDNRVIGVKKTMVFYRGKAPTGTKTKWKMNEYK 149

[Close]

BLAST of Lag0031258 vs. NCBI nr
Match: XP_022995147.1 (NAC domain-containing protein 90 [Cucurbita maxima])

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-37
Identity = 87/117 (74.36%), Postives = 91/117 (77.78%), Query Frame = 0


Query: 1   MHRVIPVIDIYTIEPSNLSRCSEEWCRRDSEQWFYFVKHQEREARRHVWLFLNEFHDLPP 60
           +HRVIPV+DIY+IEP NLSR S E CRRDSEQWF+FVK QEREAR             P 
Sbjct: 46  IHRVIPVVDIYSIEPFNLSRWSGERCRRDSEQWFFFVKQQEREAR----------GGRPN 105

Query: 61  YFLRTTSSGSGYWKATDSSGYVYSSDNRVIGVKKTMVFYRGKAPTGRKTKWKMNEYK 118
              RTTSSGSGYWKAT S  YVYSSDNRVIGVKKTMVFYRGKAPTG KTKWKMNEYK
Sbjct: 106 ---RTTSSGSGYWKATGSPSYVYSSDNRVIGVKKTMVFYRGKAPTGTKTKWKMNEYK 149

[Close]

BLAST of Lag0031258 vs. NCBI nr
Match: XP_008449583.1 (PREDICTED: NAC domain-containing protein 90 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 1.4e-36
Identity = 85/117 (72.65%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 1   MHRVIPVIDIYTIEPSNLSRCSEEWCRRDSEQWFYFVKHQEREARRHVWLFLNEFHDLPP 60
           +HRVIPV+DIY IEP NLSR S E CRRDSEQWF+FVK QEREAR               
Sbjct: 49  IHRVIPVVDIYEIEPFNLSRYSGERCRRDSEQWFFFVKQQEREAR-------------GG 108

Query: 61  YFLRTTSSGSGYWKATDSSGYVYSSDNRVIGVKKTMVFYRGKAPTGRKTKWKMNEYK 118
              RTTSSGSGYWKAT S  YVYSS+NRVIGVKKTMVFYRGKAPTG KTKWKMNEYK
Sbjct: 109 RANRTTSSGSGYWKATGSPTYVYSSENRVIGVKKTMVFYRGKAPTGTKTKWKMNEYK 152

[Close]

BLAST of Lag0031258 vs. NCBI nr
Match: TYJ96056.1 (NAC domain-containing protein 90 [Cucumis melo var. makuwa])

HSP 1 Score: 163.3 bits (412), Expect = 1.4e-36
Identity = 85/117 (72.65%), Postives = 89/117 (76.07%), Query Frame = 0


Query: 1   MHRVIPVIDIYTIEPSNLSRCSEEWCRRDSEQWFYFVKHQEREARRHVWLFLNEFHDLPP 60
           +HRVIPV+DIY IEP NLSR S E CRRDSEQWF+FVK QEREAR               
Sbjct: 49  IHRVIPVVDIYEIEPFNLSRYSGERCRRDSEQWFFFVKQQEREAR-------------GG 108

Query: 61  YFLRTTSSGSGYWKATDSSGYVYSSDNRVIGVKKTMVFYRGKAPTGRKTKWKMNEYK 118
              RTTSSGSGYWKAT S  YVYSS+NRVIGVKKTMVFYRGKAPTG KTKWKMNEYK
Sbjct: 109 RANRTTSSGSGYWKATGSPTYVYSSENRVIGVKKTMVFYRGKAPTGTKTKWKMNEYK 152

[Close]

BLAST of Lag0031258 vs. ExPASy Swiss-Prot
Match: Q9FMR3 (NAC domain-containing protein 90 OS=Arabidopsis thaliana OX=3702 GN=NAC090 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-30
Identity = 66/116 (56.90%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 1   MHRVIPVIDIYTIEPSNLSRCSEEWCRRDSEQWFYFVKHQEREARRHVWLFLNEFHDLPP 60
           MHRVIPV+D++ +EPS+L   +   CR D+EQWF+FV  QEREAR               
Sbjct: 35  MHRVIPVLDVFEVEPSHLPNVAGVRCRGDAEQWFFFVPRQEREARGG------------- 94

Query: 61  YFLRTTSSGSGYWKATDSSGYVYSSDNRVIGVKKTMVFYRGKAPTGRKTKWKMNEY 117
               + ++GSGYWKAT S G V+S DN++IG KKTMVFY GKAPTGRKTKWKMNEY
Sbjct: 95  --RPSRTTGSGYWKATGSPGPVFSKDNKMIGAKKTMVFYTGKAPTGRKTKWKMNEY 135

[Close]

BLAST of Lag0031258 vs. ExPASy Swiss-Prot
Match: Q9M290 (Putative NAC domain-containing protein 61 OS=Arabidopsis thaliana OX=3702 GN=NAC061 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.4e-30
Identity = 65/117 (55.56%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 1   MHRVIPVIDIYTIEPSNLSRCSEEWCRRDSEQWFYFVKHQEREARRHVWLFLNEFHDLPP 60
           +H +IP++D++++EP+ L   + E CR D+EQW +FV  QEREAR               
Sbjct: 34  IHSLIPILDVFSVEPTQLPNLAGERCRGDAEQWIFFVPRQEREARGG------------- 93

Query: 61  YFLRTTSSGSGYWKATDSSGYVYSSDNRVIGVKKTMVFYRGKAPTGRKTKWKMNEYK 118
               + ++GSGYWKAT S G V+S DNRVIGVKKTMVFY GKAPTGRKTKWKMNEYK
Sbjct: 94  --RPSRTTGSGYWKATGSPGPVFSPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYK 135

[Close]

BLAST of Lag0031258 vs. ExPASy Swiss-Prot
Match: Q9LVA1 (NAC domain-containing protein 101 OS=Arabidopsis thaliana OX=3702 GN=NAC101 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.2e-12
Identity = 40/122 (32.79%), Postives = 69/122 (56.56%), Query Frame = 0


Query: 4   VIPVIDIYTIEPSNLSRCSEEWCRRDS--EQWFYFVKHQEREARRHVWLFLNEFHDLPPY 63
           VI  +D+Y IEP ++    +E C R +  E+ +YF  H++++               P  
Sbjct: 38  VIKDVDLYKIEPWDI----QELCGRGTGEEREWYFFSHKDKK--------------YPTG 97

Query: 64  FLRTTSSGSGYWKATDSSGYVYSSDNRVIGVKKTMVFYRGKAPTGRKTKWKMNEYKTQSQ 123
                ++GSG+WKAT     +YS    ++G++KT+VFY+G+AP G+K+ W M+EY+ ++ 
Sbjct: 98  TRTNRATGSGFWKATGRDKAIYSK-QELVGMRKTLVFYKGRAPNGQKSDWIMHEYRLETD 140

[Close]

BLAST of Lag0031258 vs. ExPASy Swiss-Prot
Match: O65508 (NAC domain-containing protein 76 OS=Arabidopsis thaliana OX=3702 GN=NAC076 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.4e-12
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 0


Query: 4   VIPVIDIYTIEPSNLSRCSEEWCRRDSEQWFYFVKHQEREARRHVWLFLNEFHDLPPYFL 63
           VI  ID+Y IEP +L    +E CR   E+             R+ W F +      P   
Sbjct: 41  VIRDIDLYRIEPWDL----QESCRIGYEE-------------RNEWYFFSHKDKKYPTGT 100

Query: 64  RTT-SSGSGYWKATDSSGYVYSSDNRVIGVKKTMVFYRGKAPTGRKTKWKMNEYKTQSQR 123
           RT  ++ +G+WKAT     VY   +++IG++KT+VFY+G+AP G+KT W M+EY+ +S  
Sbjct: 101 RTNRATMAGFWKATGRDKAVYDK-SKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDE 143

[Close]

BLAST of Lag0031258 vs. ExPASy Swiss-Prot
Match: Q9SL41 (NAC domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=NAC037 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.6e-11
Identity = 42/123 (34.15%), Postives = 67/123 (54.47%), Query Frame = 0


Query: 4   VIPVIDIYTIEPSNLSRCSEEWCR---RDSEQWFYFVKHQEREARRHVWLFLNEFHDLPP 63
           VI  ID+Y IEP +L    +E CR    +  +W YF  H++++               P 
Sbjct: 40  VIRDIDLYRIEPWDL----QEQCRIGYEEQNEW-YFFSHKDKK--------------YPT 99

Query: 64  YFLRTTSSGSGYWKATDSSGYVYSSDNRVIGVKKTMVFYRGKAPTGRKTKWKMNEYKTQS 123
                 ++ +G+WKAT     VY    ++IG++KT+VFY+G+AP G+K+ W M+EY+ +S
Sbjct: 100 GTRTNRATMAGFWKATGRDKAVYDK-TKLIGMRKTLVFYKGRAPNGKKSDWIMHEYRLES 142

The following BLAST results are available for this feature:

BLAST of Lag0031258 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023533663.1	4.3e-38	74.36	NAC domain-containing protein 90 [Cucurbita pepo subsp. pepo]	[more]
XP_022958454.1	4.3e-38	74.36	NAC domain-containing protein 90 [Cucurbita moschata] >KAG6605975.1 NAC domain-c...	[more]
XP_022995147.1	1.3e-37	74.36	NAC domain-containing protein 90 [Cucurbita maxima]	[more]
XP_008449583.1	1.4e-36	72.65	PREDICTED: NAC domain-containing protein 90 [Cucumis melo]	[more]
TYJ96056.1	1.4e-36	72.65	NAC domain-containing protein 90 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0031258 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMR3	2.0e-30	56.90	NAC domain-containing protein 90 OS=Arabidopsis thaliana OX=3702 GN=NAC090 PE=1 ...	[more]
Q9M290	3.4e-30	55.56	Putative NAC domain-containing protein 61 OS=Arabidopsis thaliana OX=3702 GN=NAC...	[more]
Q9LVA1	7.2e-12	32.79	NAC domain-containing protein 101 OS=Arabidopsis thaliana OX=3702 GN=NAC101 PE=2...	[more]
O65508	9.4e-12	37.19	NAC domain-containing protein 76 OS=Arabidopsis thaliana OX=3702 GN=NAC076 PE=1 ...	[more]
Q9SL41	3.6e-11	34.15	NAC domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=NAC037 PE=1 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036093	NAC domain superfamily	GENE3D	2.170.150.80	NAC domain	coord: 1..125 e-value: 1.3E-22 score: 82.2
IPR036093	NAC domain superfamily	SUPERFAMILY	101941	NAC domain	coord: 2..123
IPR003441	NAC domain	PFAM	PF02365	NAM	coord: 4..117 e-value: 8.9E-15 score: 55.7
IPR003441	NAC domain	PROSITE	PS51005	NAC	coord: 1..129 score: 24.259649
None	No IPR available	PANTHER	PTHR31989	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	coord: 64..120 coord: 3..45
None	No IPR available	PANTHER	PTHR31989:SF4	NAC DOMAIN-CONTAINING PROTEIN 90	coord: 64..120 coord: 3..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031258.1	Lag0031258.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding