Lag0031256 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031256
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein kinase domain-containing protein
Location	chr11: 6353740 .. 6354288 (-)
RNA-Seq Expression	Lag0031256
Synteny	Lag0031256

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGCCGCCCTCTCAAGCTGGCTCTGCAGCAGTGACGCCAAGTCCAAGCTCGTCCGAATTGTCCATCCCGGCGGCCACATCGAGCTCCACGACGTCCCCGTCCCGGCGGCGGAGATCCTGCTCCGAAACCCCCAATTCCGCCTCACCCACTCCAAATCTTATCATCAACCCTGGGCCATCGTCTCGCCGGACTCCACGCTCATGCTCGGCCTGAAGTACTACCTCCTACCGGAAAACGCCGTCGGAAACCTCCAGAAGAGGCCGACGCCGCCGGAAAATGAAAATCTGGAATCGAATTGTTTCAGCGGCGGAAACTGTATGATGTTTTTAGCTTCGAACGAGAAGGGCGAGAGAAATGTGAGGTCGGAAAACGGAAATAGTTGCAGAGAGAAGTCGGAATCCGGCGAGGATTTGGAGGGGAATAGGGTTAAAAGGAGAGGGGTATTTTCGGAAAATGGGAATTCTAGAGGGTCTCCTAAGAGACCGTTTGGATCCTCTGATAATTGGCAACCAAGTTTGAACAGCATTTCTGAAGAATATTGA

mRNA sequence

ATGGCCGCCGCCGCCCTCTCAAGCTGGCTCTGCAGCAGTGACGCCAAGTCCAAGCTCGTCCGAATTGTCCATCCCGGCGGCCACATCGAGCTCCACGACGTCCCCGTCCCGGCGGCGGAGATCCTGCTCCGAAACCCCCAATTCCGCCTCACCCACTCCAAATCTTATCATCAACCCTGGGCCATCGTCTCGCCGGACTCCACGCTCATGCTCGGCCTGAAGTACTACCTCCTACCGGAAAACGCCGTCGGAAACCTCCAGAAGAGGCCGACGCCGCCGGAAAATGAAAATCTGGAATCGAATTGTTTCAGCGGCGGAAACTGTATGATGTTTTTAGCTTCGAACGAGAAGGGCGAGAGAAATGTGAGGTCGGAAAACGGAAATAGTTGCAGAGAGAAGTCGGAATCCGGCGAGGATTTGGAGGGGAATAGGGTTAAAAGGAGAGGGGTATTTTCGGAAAATGGGAATTCTAGAGGGTCTCCTAAGAGACCGTTTGGATCCTCTGATAATTGGCAACCAAGTTTGAACAGCATTTCTGAAGAATATTGA

Coding sequence (CDS)

ATGGCCGCCGCCGCCCTCTCAAGCTGGCTCTGCAGCAGTGACGCCAAGTCCAAGCTCGTCCGAATTGTCCATCCCGGCGGCCACATCGAGCTCCACGACGTCCCCGTCCCGGCGGCGGAGATCCTGCTCCGAAACCCCCAATTCCGCCTCACCCACTCCAAATCTTATCATCAACCCTGGGCCATCGTCTCGCCGGACTCCACGCTCATGCTCGGCCTGAAGTACTACCTCCTACCGGAAAACGCCGTCGGAAACCTCCAGAAGAGGCCGACGCCGCCGGAAAATGAAAATCTGGAATCGAATTGTTTCAGCGGCGGAAACTGTATGATGTTTTTAGCTTCGAACGAGAAGGGCGAGAGAAATGTGAGGTCGGAAAACGGAAATAGTTGCAGAGAGAAGTCGGAATCCGGCGAGGATTTGGAGGGGAATAGGGTTAAAAGGAGAGGGGTATTTTCGGAAAATGGGAATTCTAGAGGGTCTCCTAAGAGACCGTTTGGATCCTCTGATAATTGGCAACCAAGTTTGAACAGCATTTCTGAAGAATATTGA

Protein sequence

MAAAALSSWLCSSDAKSKLVRIVHPGGHIELHDVPVPAAEILLRNPQFRLTHSKSYHQPWAIVSPDSTLMLGLKYYLLPENAVGNLQKRPTPPENENLESNCFSGGNCMMFLASNEKGERNVRSENGNSCREKSESGEDLEGNRVKRRGVFSENGNSRGSPKRPFGSSDNWQPSLNSISEEY

Homology

[Close]

BLAST of Lag0031256 vs. NCBI nr
Match: XP_023523993.1 (uncharacterized protein LOC111788070 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.9 bits (585), Expect = 1.7e-56
Identity = 121/180 (67.22%), Postives = 138/180 (76.67%), Query Frame = 0


Query: 3   AAALSSWLCSSDAKSKLVRIVHPGGHIELHDVPVPAAEILLRNPQFRLTHSKSYHQPWAI 62
           A+A SSWLCS  AKSKLVRIVHPGGHIELHD P+ AAEI+LRNP+F LTHS+S + PWAI
Sbjct: 54  ASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWAI 113

Query: 63  VSPDSTLMLGLKYYLLPENAVGNLQKRPTPPENENLESNCFSGGNCMMFLASNEKGERNV 122
           VSPD+TLMLG KYYLLPEN+VGN QK     EN  LES+C +GG CMM     EKGER+V
Sbjct: 114 VSPDTTLMLGCKYYLLPENSVGNPQKM---KENGGLESDCLNGGKCMMCFVPKEKGERSV 173

Query: 123 RSENGNSCREKSESGEDLEGNRVKRRGVFSENGNSRGSPKRPFGSSDNWQPSLNSISEEY 182
           R           ESG+DL+GN    + VF +NGN RGSPKRPFGSSDNW+P+LNSISEEY
Sbjct: 174 R----------WESGDDLKGN---DKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 217

[Close]

BLAST of Lag0031256 vs. NCBI nr
Match: XP_023523994.1 (uncharacterized protein LOC111788070 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023523995.1 uncharacterized protein LOC111788070 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.9 bits (585), Expect = 1.7e-56
Identity = 121/180 (67.22%), Postives = 138/180 (76.67%), Query Frame = 0


Query: 3   AAALSSWLCSSDAKSKLVRIVHPGGHIELHDVPVPAAEILLRNPQFRLTHSKSYHQPWAI 62
           A+A SSWLCS  AKSKLVRIVHPGGHIELHD P+ AAEI+LRNP+F LTHS+S + PWAI
Sbjct: 44  ASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWAI 103

Query: 63  VSPDSTLMLGLKYYLLPENAVGNLQKRPTPPENENLESNCFSGGNCMMFLASNEKGERNV 122
           VSPD+TLMLG KYYLLPEN+VGN QK     EN  LES+C +GG CMM     EKGER+V
Sbjct: 104 VSPDTTLMLGCKYYLLPENSVGNPQKM---KENGGLESDCLNGGKCMMCFVPKEKGERSV 163

Query: 123 RSENGNSCREKSESGEDLEGNRVKRRGVFSENGNSRGSPKRPFGSSDNWQPSLNSISEEY 182
           R           ESG+DL+GN    + VF +NGN RGSPKRPFGSSDNW+P+LNSISEEY
Sbjct: 164 R----------WESGDDLKGN---DKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 207

[Close]

BLAST of Lag0031256 vs. NCBI nr
Match: XP_022948495.1 (uncharacterized protein LOC111452155 isoform X2 [Cucurbita moschata] >KAG6606824.1 hypothetical protein SDJN03_00166, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229.6 bits (584), Expect = 2.2e-56
Identity = 121/180 (67.22%), Postives = 137/180 (76.11%), Query Frame = 0


Query: 3   AAALSSWLCSSDAKSKLVRIVHPGGHIELHDVPVPAAEILLRNPQFRLTHSKSYHQPWAI 62
           A+A SSWLCS  AKSKLVRIVHPGGHIELHD P+ AAEI+LRNP+F LTHS+S + PWAI
Sbjct: 2   ASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWAI 61

Query: 63  VSPDSTLMLGLKYYLLPENAVGNLQKRPTPPENENLESNCFSGGNCMMFLASNEKGERNV 122
           VSPD+TLMLG KYYLLPEN+VGN QK     EN  LES+C +GG CMM     EKGER V
Sbjct: 62  VSPDTTLMLGCKYYLLPENSVGNPQKM---KENGGLESDCLNGGKCMMCFVPKEKGERTV 121

Query: 123 RSENGNSCREKSESGEDLEGNRVKRRGVFSENGNSRGSPKRPFGSSDNWQPSLNSISEEY 182
           R           ESG+DL+GN    + VF +NGN RGSPKRPFGSSDNW+P+LNSISEEY
Sbjct: 122 R----------WESGDDLKGN---DKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 165

[Close]

BLAST of Lag0031256 vs. NCBI nr
Match: XP_022948492.1 (uncharacterized protein LOC111452155 isoform X1 [Cucurbita moschata] >XP_022948493.1 uncharacterized protein LOC111452155 isoform X1 [Cucurbita moschata] >XP_022948494.1 uncharacterized protein LOC111452155 isoform X1 [Cucurbita moschata])

HSP 1 Score: 229.6 bits (584), Expect = 2.2e-56
Identity = 121/180 (67.22%), Postives = 137/180 (76.11%), Query Frame = 0


Query: 3   AAALSSWLCSSDAKSKLVRIVHPGGHIELHDVPVPAAEILLRNPQFRLTHSKSYHQPWAI 62
           A+A SSWLCS  AKSKLVRIVHPGGHIELHD P+ AAEI+LRNP+F LTHS+S + PWAI
Sbjct: 44  ASAFSSWLCSYGAKSKLVRIVHPGGHIELHDGPIRAAEIMLRNPEFSLTHSQSANHPWAI 103

Query: 63  VSPDSTLMLGLKYYLLPENAVGNLQKRPTPPENENLESNCFSGGNCMMFLASNEKGERNV 122
           VSPD+TLMLG KYYLLPEN+VGN QK     EN  LES+C +GG CMM     EKGER V
Sbjct: 104 VSPDTTLMLGCKYYLLPENSVGNPQKM---KENGGLESDCLNGGKCMMCFVPKEKGERTV 163

Query: 123 RSENGNSCREKSESGEDLEGNRVKRRGVFSENGNSRGSPKRPFGSSDNWQPSLNSISEEY 182
           R           ESG+DL+GN    + VF +NGN RGSPKRPFGSSDNW+P+LNSISEEY
Sbjct: 164 R----------WESGDDLKGN---DKRVFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 207

[Close]

BLAST of Lag0031256 vs. NCBI nr
Match: XP_022998311.1 (uncharacterized protein LOC111492985 isoform X1 [Cucurbita maxima])

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-54
Identity = 118/180 (65.56%), Postives = 136/180 (75.56%), Query Frame = 0


Query: 3   AAALSSWLCSSDAKSKLVRIVHPGGHIELHDVPVPAAEILLRNPQFRLTHSKSYHQPWAI 62
           ++A SSWLCS  AKSKLVRIVHP GHIELHD P+ AAEI+LRNP+F LTHS+S + PWAI
Sbjct: 44  SSAFSSWLCSYGAKSKLVRIVHPSGHIELHDSPIWAAEIMLRNPEFSLTHSQSANHPWAI 103

Query: 63  VSPDSTLMLGLKYYLLPENAVGNLQKRPTPPENENLESNCFSGGNCMMFLASNEKGERNV 122
           VSPD+TLML  KY LLPEN+VGN QK     ENE LES+C + G CMM     EKGER V
Sbjct: 104 VSPDTTLMLCCKYDLLPENSVGNPQKM---KENEGLESDCLNDGKCMMCFVPKEKGERTV 163

Query: 123 RSENGNSCREKSESGEDLEGNRVKRRGVFSENGNSRGSPKRPFGSSDNWQPSLNSISEEY 182
           R           ESG+DL+GN   +RG+F +NGN RGSPKRPFGSSDNW+P+LNSISEEY
Sbjct: 164 R----------WESGDDLKGN--DKRGIFLQNGNIRGSPKRPFGSSDNWEPNLNSISEEY 208

The following BLAST results are available for this feature:

BLAST of Lag0031256 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023523993.1	1.7e-56	67.22	uncharacterized protein LOC111788070 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023523994.1	1.7e-56	67.22	uncharacterized protein LOC111788070 isoform X2 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022948495.1	2.2e-56	67.22	uncharacterized protein LOC111452155 isoform X2 [Cucurbita moschata] >KAG6606824...	[more]
XP_022948492.1	2.2e-56	67.22	uncharacterized protein LOC111452155 isoform X1 [Cucurbita moschata] >XP_0229484...	[more]
XP_022998311.1	1.2e-54	65.56	uncharacterized protein LOC111492985 isoform X1 [Cucurbita maxima]	[more]

BLAST of Lag0031256 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 11..180 e-value: 1.7E-23 score: 83.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..182
None	No IPR available	PANTHER	PTHR33052:SF24	OS06G0568400 PROTEIN	coord: 6..141
None	No IPR available	PANTHER	PTHR33052:SF24	OS06G0568400 PROTEIN	coord: 97..181
None	No IPR available	PANTHER	PTHR33052	DUF4228 DOMAIN PROTEIN-RELATED	coord: 97..181
None	No IPR available	PANTHER	PTHR33052	DUF4228 DOMAIN PROTEIN-RELATED	coord: 6..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031256.1	Lag0031256.1	mRNA