Lag0031202 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031202
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Calcium-binding EF-hand
Location	chr11: 5752975 .. 5753403 (-)
RNA-Seq Expression	Lag0031202
Synteny	Lag0031202

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGGTCGTAATAGACGGATCGACGGTGAGGAACTTCGTGAACGACGAATCTCACTTCAAGAAAAGCGTCGACGAAGCCTTCGCCGCTCTGGATCTCAACCACGACGGCGTCCTCTCCAAGTCCGAGCTCCGCAAGGCCTTCGAGACGCTCCGCCTAATCGAGACTCACTTCGGCGTCGACGTCACCACTCCGCCCGAGCAACTCACTCAGCTCTACGATTCCATCTTCGAGAAGTTCGATTGCGACAAAAGCGGCACCGTCGATACGGAGGAGTTTCGGACGGAGATGAAGAACATCTTGCTCGCCATCGCCGATGGATTAGGCTCCTCGCCGATTCAGATGGCGCTCCACGACGGCGATCAGAGTTTCCTCAAGCAGGCCGCGGATCTGGAGGCTTCCAAACTCGCTCAATCGTCTACCTGA

mRNA sequence

ATGGCGGTGGTCGTAATAGACGGATCGACGGTGAGGAACTTCGTGAACGACGAATCTCACTTCAAGAAAAGCGTCGACGAAGCCTTCGCCGCTCTGGATCTCAACCACGACGGCGTCCTCTCCAAGTCCGAGCTCCGCAAGGCCTTCGAGACGCTCCGCCTAATCGAGACTCACTTCGGCGTCGACGTCACCACTCCGCCCGAGCAACTCACTCAGCTCTACGATTCCATCTTCGAGAAGTTCGATTGCGACAAAAGCGGCACCGTCGATACGGAGGAGTTTCGGACGGAGATGAAGAACATCTTGCTCGCCATCGCCGATGGATTAGGCTCCTCGCCGATTCAGATGGCGCTCCACGACGGCGATCAGAGTTTCCTCAAGCAGGCCGCGGATCTGGAGGCTTCCAAACTCGCTCAATCGTCTACCTGA

Coding sequence (CDS)

ATGGCGGTGGTCGTAATAGACGGATCGACGGTGAGGAACTTCGTGAACGACGAATCTCACTTCAAGAAAAGCGTCGACGAAGCCTTCGCCGCTCTGGATCTCAACCACGACGGCGTCCTCTCCAAGTCCGAGCTCCGCAAGGCCTTCGAGACGCTCCGCCTAATCGAGACTCACTTCGGCGTCGACGTCACCACTCCGCCCGAGCAACTCACTCAGCTCTACGATTCCATCTTCGAGAAGTTCGATTGCGACAAAAGCGGCACCGTCGATACGGAGGAGTTTCGGACGGAGATGAAGAACATCTTGCTCGCCATCGCCGATGGATTAGGCTCCTCGCCGATTCAGATGGCGCTCCACGACGGCGATCAGAGTTTCCTCAAGCAGGCCGCGGATCTGGAGGCTTCCAAACTCGCTCAATCGTCTACCTGA

Protein sequence

MAVVVIDGSTVRNFVNDESHFKKSVDEAFAALDLNHDGVLSKSELRKAFETLRLIETHFGVDVTTPPEQLTQLYDSIFEKFDCDKSGTVDTEEFRTEMKNILLAIADGLGSSPIQMALHDGDQSFLKQAADLEASKLAQSST

Homology

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BLAST of Lag0031202 vs. NCBI nr
Match: KAG7018108.1 (hypothetical protein SDJN02_19976, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-66
Identity = 135/141 (95.74%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MAVVVIDGSTVRNFVNDESHFKKSVDEAFAALDLNHDGVLSKSELRKAFETLRLIETHFG 60
           MAVVVIDGSTVRNFVNDESHFKKSVDEAFAALDLN+DGVLS+SELRKAFETLRLIETHFG
Sbjct: 1   MAVVVIDGSTVRNFVNDESHFKKSVDEAFAALDLNNDGVLSRSELRKAFETLRLIETHFG 60

Query: 61  VDVTTPPEQLTQLYDSIFEKFDCDKSGTVDTEEFRTEMKNILLAIADGLGSSPIQMALHD 120
           VDV TPPE+LTQLYDSIFEKFDCDKSGTVD EEFRTEMKNILLAIADGLGSSPIQMAL D
Sbjct: 61  VDVVTPPEKLTQLYDSIFEKFDCDKSGTVDAEEFRTEMKNILLAIADGLGSSPIQMALDD 120

Query: 121 GDQSFLKQAADLEASKLAQSS 142
           GDQSFLKQAADLEASKLAQSS
Sbjct: 121 GDQSFLKQAADLEASKLAQSS 141

[Close]

BLAST of Lag0031202 vs. NCBI nr
Match: XP_022934103.1 (uncharacterized protein LOC111441377 [Cucurbita moschata] >KAG6581608.1 hypothetical protein SDJN03_21610, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-66
Identity = 135/141 (95.74%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MAVVVIDGSTVRNFVNDESHFKKSVDEAFAALDLNHDGVLSKSELRKAFETLRLIETHFG 60
           MAVVVIDGSTVRNFVNDESHFKKSVDEAFAALDLN+DGVLS+SELRKAFETLRLIETHFG
Sbjct: 1   MAVVVIDGSTVRNFVNDESHFKKSVDEAFAALDLNNDGVLSRSELRKAFETLRLIETHFG 60

Query: 61  VDVTTPPEQLTQLYDSIFEKFDCDKSGTVDTEEFRTEMKNILLAIADGLGSSPIQMALHD 120
           VDV TPPE+LTQLYDSIFEKFDCDKSGTVD EEFRTEMKNILLAIADGLGSSPIQMAL D
Sbjct: 61  VDVVTPPEKLTQLYDSIFEKFDCDKSGTVDAEEFRTEMKNILLAIADGLGSSPIQMALDD 120

Query: 121 GDQSFLKQAADLEASKLAQSS 142
           GDQSFLKQAADLEASKLAQSS
Sbjct: 121 GDQSFLKQAADLEASKLAQSS 141

[Close]

BLAST of Lag0031202 vs. NCBI nr
Match: XP_038905172.1 (uncharacterized protein LOC120091281 [Benincasa hispida])

HSP 1 Score: 262.7 bits (670), Expect = 1.8e-66
Identity = 134/142 (94.37%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MAVVVIDGSTVRNFVNDESHFKKSVDEAFAALDLNHDGVLSKSELRKAFETLRLIETHFG 60
           MAVVVIDGSTVRNFVNDESHFKKS+DEAFAALDLN+DGVLS+SELRKAFETLRLIETHFG
Sbjct: 1   MAVVVIDGSTVRNFVNDESHFKKSIDEAFAALDLNNDGVLSRSELRKAFETLRLIETHFG 60

Query: 61  VDVTTPPEQLTQLYDSIFEKFDCDKSGTVDTEEFRTEMKNILLAIADGLGSSPIQMALHD 120
           VDVTT PEQLTQLYDSIFE+FDCDKSGTVD +EFRTEMKNILLAIADGLGSSPIQMAL D
Sbjct: 61  VDVTTTPEQLTQLYDSIFEQFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD 120

Query: 121 GDQSFLKQAADLEASKLAQSST 143
           GDQSFLKQAADLEASKLAQSST
Sbjct: 121 GDQSFLKQAADLEASKLAQSST 142

[Close]

BLAST of Lag0031202 vs. NCBI nr
Match: XP_022983603.1 (uncharacterized protein LOC111482160 [Cucurbita maxima] >XP_022983604.1 uncharacterized protein LOC111482160 [Cucurbita maxima])

HSP 1 Score: 261.9 bits (668), Expect = 3.1e-66
Identity = 134/141 (95.04%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MAVVVIDGSTVRNFVNDESHFKKSVDEAFAALDLNHDGVLSKSELRKAFETLRLIETHFG 60
           MAVVVIDGSTVRNFVNDESHFKKSVDEAFAALDLN+DGVLS+SELRKAFETLRLIETHFG
Sbjct: 1   MAVVVIDGSTVRNFVNDESHFKKSVDEAFAALDLNNDGVLSRSELRKAFETLRLIETHFG 60

Query: 61  VDVTTPPEQLTQLYDSIFEKFDCDKSGTVDTEEFRTEMKNILLAIADGLGSSPIQMALHD 120
           VDV TPPE+LTQLYDSIFE+FDCDKSGTVD EEFRTEMKNILLAIADGLGSSPIQMAL D
Sbjct: 61  VDVVTPPEKLTQLYDSIFEQFDCDKSGTVDAEEFRTEMKNILLAIADGLGSSPIQMALDD 120

Query: 121 GDQSFLKQAADLEASKLAQSS 142
           GDQSFLKQAADLEASKLAQSS
Sbjct: 121 GDQSFLKQAADLEASKLAQSS 141

[Close]

BLAST of Lag0031202 vs. NCBI nr
Match: XP_023526874.1 (uncharacterized protein LOC111790245 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.8 bits (665), Expect = 7.0e-66
Identity = 133/141 (94.33%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MAVVVIDGSTVRNFVNDESHFKKSVDEAFAALDLNHDGVLSKSELRKAFETLRLIETHFG 60
           MAVVVIDGSTVRNFVNDESHFKKSVDEAFA+LDLN+DGVLS+SELRKAFETLRLIETHFG
Sbjct: 1   MAVVVIDGSTVRNFVNDESHFKKSVDEAFASLDLNNDGVLSRSELRKAFETLRLIETHFG 60

Query: 61  VDVTTPPEQLTQLYDSIFEKFDCDKSGTVDTEEFRTEMKNILLAIADGLGSSPIQMALHD 120
           VDV TPPE+LTQLYDSIFE+FDCDKSGTVD EEFRTEMKNILLAIADGLGSSPIQMAL D
Sbjct: 61  VDVVTPPEKLTQLYDSIFEQFDCDKSGTVDAEEFRTEMKNILLAIADGLGSSPIQMALDD 120

Query: 121 GDQSFLKQAADLEASKLAQSS 142
           GDQSFLKQAADLEASKLAQSS
Sbjct: 121 GDQSFLKQAADLEASKLAQSS 141

The following BLAST results are available for this feature:

BLAST of Lag0031202 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018108.1	1.1e-66	95.74	hypothetical protein SDJN02_19976, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022934103.1	1.1e-66	95.74	uncharacterized protein LOC111441377 [Cucurbita moschata] >KAG6581608.1 hypothet...	[more]
XP_038905172.1	1.8e-66	94.37	uncharacterized protein LOC120091281 [Benincasa hispida]	[more]
XP_022983603.1	3.1e-66	95.04	uncharacterized protein LOC111482160 [Cucurbita maxima] >XP_022983604.1 uncharac...	[more]
XP_023526874.1	7.0e-66	94.33	uncharacterized protein LOC111790245 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0031202 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 24..52 e-value: 0.0041 score: 26.3 coord: 73..101 e-value: 0.0059 score: 25.8
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 27..98 e-value: 2.3E-11 score: 44.0
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 69..104 score: 11.02648
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 20..55 score: 11.556493
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 25..99 e-value: 1.42407E-8 score: 46.3869
None	No IPR available	GENE3D	1.10.238.10		coord: 7..106 e-value: 2.7E-15 score: 58.1
None	No IPR available	PANTHER	PTHR34574:SF5	CALCIUM-BINDING EF-HAND FAMILY PROTEIN	coord: 1..139
None	No IPR available	PANTHER	PTHR34574	CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED	coord: 1..139
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 33..45
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 82..94
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 10..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031202.1	Lag0031202.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding