Lag0031177 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031177
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	2-haloacrylate reductase
Location	chr11: 5554792 .. 5555115 (-)
RNA-Seq Expression	Lag0031177
Synteny	Lag0031177

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGAGGGAGGGAGGTCCTCCCTCCCTCCCTGTATGTTCTTACTGAGAACCAGCTTCCATTGCGACCTTCGTCTTCTTCCCTCTTCCAGACTCTTCCATTGCAACCCCATCGTTTTCCAGCATTTCTTCCACCGATTTCCACCGCCACCCAATTGTTCATTTACGACTCCTCGCTACAATTTAAAGCTCGGGGCTCAAAACTTCACAGCGAGGGCAATTTCTTCGCCGGCAGAATCGTCGACCCCAGAAATGGTTAAGGCCATAAGGGTTCATGAACATGGTGGGCATGAGGTTTGCTTCTTTCTTTTCTGCGCTTCTTGA

mRNA sequence

ATGGGGGAGGGAGGGAGGTCCTCCCTCCCTCCCTGTATGTTCTTACTGAGAACCAGCTTCCATTGCGACCTTCGTCTTCTTCCCTCTTCCAGACTCTTCCATTGCAACCCCATCGTTTTCCAGCATTTCTTCCACCGATTTCCACCGCCACCCAATTGTTCATTTACGACTCCTCGCTACAATTTAAAGCTCGGGGCTCAAAACTTCACAGCGAGGGCAATTTCTTCGCCGGCAGAATCGTCGACCCCAGAAATGGTTAAGGCCATAAGGGTTCATGAACATGGTGGGCATGAGGTTTGCTTCTTTCTTTTCTGCGCTTCTTGA

Coding sequence (CDS)

ATGGGGGAGGGAGGGAGGTCCTCCCTCCCTCCCTGTATGTTCTTACTGAGAACCAGCTTCCATTGCGACCTTCGTCTTCTTCCCTCTTCCAGACTCTTCCATTGCAACCCCATCGTTTTCCAGCATTTCTTCCACCGATTTCCACCGCCACCCAATTGTTCATTTACGACTCCTCGCTACAATTTAAAGCTCGGGGCTCAAAACTTCACAGCGAGGGCAATTTCTTCGCCGGCAGAATCGTCGACCCCAGAAATGGTTAAGGCCATAAGGGTTCATGAACATGGTGGGCATGAGGTTTGCTTCTTTCTTTTCTGCGCTTCTTGA

Protein sequence

MGEGGRSSLPPCMFLLRTSFHCDLRLLPSSRLFHCNPIVFQHFFHRFPPPPNCSFTTPRYNLKLGAQNFTARAISSPAESSTPEMVKAIRVHEHGGHEVCFFLFCAS

Homology

[Close]

BLAST of Lag0031177 vs. NCBI nr
Match: KAG6579624.1 (hypothetical protein SDJN03_24072, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-24
Identity = 65/90 (72.22%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 13  MFLLR--TSFHCDLR-LLPSSRLFHCNPIVFQHFFHRFPPPPNCSFTTPRYNLKLGAQNF 72
           MFL R  + FHCDLR LLPSSRLFHCNPIV +HFF R P   +CS  TPR +LKLGA+NF
Sbjct: 1   MFLPRITSQFHCDLRLLLPSSRLFHCNPIVSRHFFKRIPSSLSCSSETPRCDLKLGAENF 60

Query: 73  TARAISSPAESSTPEMVKAIRVHEHGGHEV 100
            ARAISS  ESS PEMVKAIRVHE GG EV
Sbjct: 61  IARAISSRVESSAPEMVKAIRVHEVGGPEV 90

[Close]

BLAST of Lag0031177 vs. NCBI nr
Match: XP_023520564.1 (uncharacterized protein LOC111783974 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 121.3 bits (303), Expect = 5.0e-24
Identity = 66/90 (73.33%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 13  MFLLRTS--FHCDLR-LLPSSRLFHCNPIVFQHFFHRFPPPPNCSFTTPRYNLKLGAQNF 72
           MFL R S  F+C+LR LLPSSRLFHCN IV QHFF+R P  PNCS  T R +LKLGA+NF
Sbjct: 1   MFLPRISSQFNCELRLLLPSSRLFHCNSIVSQHFFYRIPSSPNCSSETHRCDLKLGAENF 60

Query: 73  TARAISSPAESSTPEMVKAIRVHEHGGHEV 100
            ARAISS AESS PEMVKAIRVHE GG EV
Sbjct: 61  IARAISSRAESSAPEMVKAIRVHEVGGPEV 90

[Close]

BLAST of Lag0031177 vs. NCBI nr
Match: KAG7017081.1 (qor [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.0 bits (297), Expect = 2.5e-23
Identity = 63/90 (70.00%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 13  MFLLR--TSFHCDLR-LLPSSRLFHCNPIVFQHFFHRFPPPPNCSFTTPRYNLKLGAQNF 72
           MFL R  + FHCDLR LLPSSRLFHC+PIV +HFF R P   +CS  TPR +LKLGA+NF
Sbjct: 1   MFLPRITSQFHCDLRLLLPSSRLFHCSPIVSRHFFKRIPSSLSCSSETPRCDLKLGAENF 60

Query: 73  TARAISSPAESSTPEMVKAIRVHEHGGHEV 100
            ARA+SS  ESS PEMVKAIRVHE GG EV
Sbjct: 61  IARAVSSRVESSAPEMVKAIRVHEVGGPEV 90

[Close]

BLAST of Lag0031177 vs. NCBI nr
Match: XP_022969802.1 (uncharacterized protein LOC111468893 [Cucurbita maxima])

HSP 1 Score: 117.5 bits (293), Expect = 7.2e-23
Identity = 65/90 (72.22%), Postives = 69/90 (76.67%), Query Frame = 0


Query: 13  MFLLRTS--FHCDLR-LLPSSRLFHCNPIVFQHFFHRFPPPPNCSFTTPRYNLKLGAQNF 72
           MFL R S  FHCDLR LLPSSRLF+CN IV QHFF+R P   NCS  T R +LKLGA+NF
Sbjct: 1   MFLPRISSQFHCDLRLLLPSSRLFYCNSIVSQHFFYRIPSSLNCSSETHRCDLKLGAENF 60

Query: 73  TARAISSPAESSTPEMVKAIRVHEHGGHEV 100
             RAISS AESS PEMVKAIRVHE GG EV
Sbjct: 61  IPRAISSRAESSAPEMVKAIRVHEVGGPEV 90

[Close]

BLAST of Lag0031177 vs. NCBI nr
Match: XP_022929084.1 (uncharacterized protein LOC111435775 [Cucurbita moschata])

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21
Identity = 61/90 (67.78%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 13  MFLLR--TSFHCDLR-LLPSSRLFHCNPIVFQHFFHRFPPPPNCSFTTPRYNLKLGAQNF 72
           MFL R  + FHCDLR LLPSSRLFHC+PIV +HFF R P   +CS  T R +LKLGA+NF
Sbjct: 1   MFLPRITSQFHCDLRLLLPSSRLFHCSPIVSRHFFKRIPSSLSCSSETHRCDLKLGAENF 60

Query: 73  TARAISSPAESSTPEMVKAIRVHEHGGHEV 100
            ARAISS  E S PEMVKA+RVHE GG EV
Sbjct: 61  IARAISSRVELSAPEMVKAVRVHEVGGPEV 90

The following BLAST results are available for this feature:

BLAST of Lag0031177 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579624.1	5.0e-24	72.22	hypothetical protein SDJN03_24072, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023520564.1	5.0e-24	73.33	uncharacterized protein LOC111783974 [Cucurbita pepo subsp. pepo]	[more]
KAG7017081.1	2.5e-23	70.00	qor [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022969802.1	7.2e-23	72.22	uncharacterized protein LOC111468893 [Cucurbita maxima]	[more]
XP_022929084.1	1.4e-21	67.78	uncharacterized protein LOC111435775 [Cucurbita moschata]	[more]

BLAST of Lag0031177 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031177.1	Lag0031177.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity