Lag0031164 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031164
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	60S ribosomal protein L31
Location	chr11: 5462067 .. 5463636 (+)
RNA-Seq Expression	Lag0031164
Synteny	Lag0031164

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATAAATCAGCTAAGGCAAGAAAAAGTGAGGTCGTCACCAGGGAGTACACCGTCAATCTCCACAAACGCTTGCACGGATGGTAACTCTCTCTGTCTCTCTGTCTCTCTGATATGCTGTTTAGATCCGGTGAAAAGTGTAGACGAAGACGATTTAACTTAAGTTCAGTTCTCTGGCTCCTTTATTTGGTTCGTCATGTTCTAACTAGAAACTTCAGCCGTAGGTTGTTTCATCGGCATGAATTTGGTCCTTCTGGTGATTTAATTTCAAAGTTTAACTATGCGAACCCACTGTTTCGGTTTCATGTCGTCAGATATGAAAATAAGGTTTTGTTAAATAGCATATCTTTGAATTTAATCTTCTGTTGATGGGCTGTGTTGTTGAAGTGACATATTATTGCCTATTGGGATTGTTGATTCGACTGAATTGGTGGGATTGAGGGGGGCTCGATGATCTTTATTGTTGTTAGTAGTTTGTGTAATTTGGGTTGTTGGTAGTGTAGTTGCTCGTGGCACTGTTAATTTTGCTTTCCATGATAGAAGTTTTGGTTCTTAACGAACAACTGATGTGATTATATGTTACATTACATCTGCAAGGGCTTCTAGGCTACACAGGGTTCTCACAGTTCATCTTGAAAGGCCTATATCTTCAATTTTATGGTCCTAGAAAAATGTCCATACAAGTAGCTCCGTGTTCATATTAGTATTCATTTTGATTTCTTGAGAGATAATTGACACTTTTGTGCTGTTTCTGAACCCGTGTGCATGTTTGAACCGCAACATATCATTGGTAAATCAATGTGTTCTCAACATGTTCGCTTCACTTTTTGTTTCTATTTGGTTTATTCAATAGATCGATGAATTTCTAATTTGGTGATGGCCTCTGTCCCTGCATTCCATTCCTTGCTTTGTTTCTGATGGAATCAAACTTTACTTTCTTATGACAAAATGTCGTTATTAATAATATTTTGATGTGCCAATTGAAGAAGTTTCTAGCTAGTGTCATTGATAATGGCTTAGAACTAATGAAATGAACTGATTTTCGTTTGTCATGTATTCTTATTTACTGGAAAACAGTGTAAGTTCTAGAAAAGATATCTTTTTCCCAACGGTGGCATTCTCGTTTTTAAGTATGACTGACTCAGCTTCAATCTCTCTTATTTTTTGAATTTTGTTGCCTTGGAATTAGTACTTGATTCCAATTCCTTGTATTTTTAATCTTGTTGTATACATTTCGTTTTCTTGATTGCTTCTAGCGACTTCTTATTCTCGATACTTCTTATGCAGCACATTCAAGAAGAAGGCACCGAAGGCTATTAAAGAACTCAGAAAGTTTGCTCAGAGTGCTATGGGTACCACTGATGTTAGAGTGGACGTGAAACTTAACAAGCATATATGGAGTCGTGGAATTAGAAGTGTGCCAAGGAGGGTCCGTGTCCGCATTGCACGGAAGCGTAACGACGAGGAAGATGCCAAGGAGGAATTCTATTCCTTAGTAACTGTCGCAGAGGTACCTGCAGAGGGATTGAAGGGCTTGGGTACCAAGGTCATTGATGAAGAGGACTAG

mRNA sequence

ATGGCGGATAAATCAGCTAAGGCAAGAAAAAGTGAGGTCGTCACCAGGGAGTACACCGTCAATCTCCACAAACGCTTGCACGGATGCACATTCAAGAAGAAGGCACCGAAGGCTATTAAAGAACTCAGAAAGTTTGCTCAGAGTGCTATGGGTACCACTGATGTTAGAGTGGACGTGAAACTTAACAAGCATATATGGAGTCGTGGAATTAGAAGTGTGCCAAGGAGGGTCCGTGTCCGCATTGCACGGAAGCGTAACGACGAGGAAGATGCCAAGGAGGAATTCTATTCCTTAGTAACTGTCGCAGAGGTACCTGCAGAGGGATTGAAGGGCTTGGGTACCAAGGTCATTGATGAAGAGGACTAG

Coding sequence (CDS)

ATGGCGGATAAATCAGCTAAGGCAAGAAAAAGTGAGGTCGTCACCAGGGAGTACACCGTCAATCTCCACAAACGCTTGCACGGATGCACATTCAAGAAGAAGGCACCGAAGGCTATTAAAGAACTCAGAAAGTTTGCTCAGAGTGCTATGGGTACCACTGATGTTAGAGTGGACGTGAAACTTAACAAGCATATATGGAGTCGTGGAATTAGAAGTGTGCCAAGGAGGGTCCGTGTCCGCATTGCACGGAAGCGTAACGACGAGGAAGATGCCAAGGAGGAATTCTATTCCTTAGTAACTGTCGCAGAGGTACCTGCAGAGGGATTGAAGGGCTTGGGTACCAAGGTCATTGATGAAGAGGACTAG

Protein sequence

MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQSAMGTTDVRVDVKLNKHIWSRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLVTVAEVPAEGLKGLGTKVIDEED

Homology

[Close]

BLAST of Lag0031164 vs. NCBI nr
Match: XP_038903425.1 (60S ribosomal protein L31 [Benincasa hispida])

HSP 1 Score: 231.5 bits (589), Expect = 3.9e-57
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQSAMGTTDVRVDVK 60
           MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQ AMGTTDVRVDVK
Sbjct: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQKAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLVTVAEVPAEGLKGLGTKVIDEE 120
           LNK+IWSRGIRSVPRRVRVRIARKRNDEEDAKEEFYSL+TVAEVPAEGLKGLGTKVIDEE
Sbjct: 61  LNKNIWSRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLITVAEVPAEGLKGLGTKVIDEE 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Lag0031164 vs. NCBI nr
Match: XP_022152572.1 (60S ribosomal protein L31 [Momordica charantia])

HSP 1 Score: 231.1 bits (588), Expect = 5.1e-57
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQSAMGTTDVRVDVK 60
           MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAP AIKELRKFAQ AMGTTDVRVDVK
Sbjct: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPNAIKELRKFAQKAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLVTVAEVPAEGLKGLGTKVIDEE 120
           LNKHIWSRGIRSVPRRVRVRIA+KRNDEEDAKEEFYSLVTVAEVPAEGLKGLGTKVIDEE
Sbjct: 61  LNKHIWSRGIRSVPRRVRVRIAQKRNDEEDAKEEFYSLVTVAEVPAEGLKGLGTKVIDEE 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Lag0031164 vs. NCBI nr
Match: XP_023525745.1 (60S ribosomal protein L31-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.2 bits (583), Expect = 1.9e-56
Identity = 117/121 (96.69%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQSAMGTTDVRVDVK 60
           MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQ+AMGTTDVRVDVK
Sbjct: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLVTVAEVPAEGLKGLGTKVIDEE 120
           LNKHIWSRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLVTVAEVPAEG KGL TKVIDEE
Sbjct: 61  LNKHIWSRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLVTVAEVPAEGFKGLDTKVIDEE 120

Query: 121 D 122
           +
Sbjct: 121 E 121

[Close]

BLAST of Lag0031164 vs. NCBI nr
Match: XP_031401093.1 (60S ribosomal protein L31 [Punica granatum] >OWM78362.1 hypothetical protein CDL15_Pgr016086 [Punica granatum] >PKI31655.1 hypothetical protein CRG98_047939 [Punica granatum])

HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54
Identity = 109/121 (90.08%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQSAMGTTDVRVDVK 60
           MAD+ +K RK EVVTREYT+NLHKRLHGCTFKKKAPKAIKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1   MADRKSKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLVTVAEVPAEGLKGLGTKVIDEE 120
           LNKH+WSRGIRSVPRRVRVR+ARKRNDEEDAKEEFYSLVTVAE+P EGLKGLGTKVIDEE
Sbjct: 61  LNKHVWSRGIRSVPRRVRVRVARKRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEE 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Lag0031164 vs. NCBI nr
Match: XP_015888290.1 (60S ribosomal protein L31 [Ziziphus jujuba])

HSP 1 Score: 221.9 bits (564), Expect = 3.1e-54
Identity = 111/121 (91.74%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQSAMGTTDVRVDVK 60
           M DK++K RK EVVTREYTVNLHKRLHGCTFKKKAPKAIKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1   MVDKTSKGRKEEVVTREYTVNLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLVTVAEVPAEGLKGLGTKVIDEE 120
           LNKH+WSRGIRSVPRRVRVRIARKRNDEED KEEFYSLVTVAEVP EGLKGLGTKVIDEE
Sbjct: 61  LNKHLWSRGIRSVPRRVRVRIARKRNDEEDNKEEFYSLVTVAEVPPEGLKGLGTKVIDEE 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Lag0031164 vs. ExPASy Swiss-Prot
Match: Q9M573 (60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-54
Identity = 105/121 (86.78%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQSAMGTTDVRVDVK 60
           MADK +K RK EVV+REYT+NLHKRLHGCTFKKKAPKAIKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1   MADKGSKPRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLVTVAEVPAEGLKGLGTKVIDEE 120
           LNKHIWSRGIRSVPRR+RVRIARKRND+EDAKEE YSLVTVAE+P  GLKGLGT+VIDEE
Sbjct: 61  LNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQVIDEE 120

Query: 121 D 122
           +
Sbjct: 121 E 121

[Close]

BLAST of Lag0031164 vs. ExPASy Swiss-Prot
Match: P46290 (60S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.5e-51
Identity = 102/121 (84.30%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQSAMGTTDVRVDVK 60
           M+DK+ K RK EVVTREYT+NLHKRLH CTFKKKAP AIKE+RKFAQ AMGT DVRVDVK
Sbjct: 1   MSDKT-KGRKEEVVTREYTINLHKRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLVTVAEVPAEGLKGLGTKVIDEE 120
           LNK IWSRGIRSVPRRVRVRIARKRND+EDAKEE YSLVTVAE+PA+GLKGLGTK+I++E
Sbjct: 61  LNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAKGLKGLGTKIIEDE 120

Query: 121 D 122
           D
Sbjct: 121 D 120

[Close]

BLAST of Lag0031164 vs. ExPASy Swiss-Prot
Match: P51420 (60S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2)

HSP 1 Score: 196.4 bits (498), Expect = 1.8e-49
Identity = 94/115 (81.74%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 7   KARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQSAMGTTDVRVDVKLNKHIW 66
           K RK EV+TREYT+NLH+RLH CTFKKKAPKAIKE+RKFA+ AMGT DVRVDVKLNK IW
Sbjct: 5   KGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIW 64

Query: 67  SRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLVTVAEVPAEGLKGLGTKVIDEED 122
           S+GIR  PRR+RVR+ARKRND+EDAKEEF+SLVTVAE+PAEGL GLGTKVI+EED
Sbjct: 65  SKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119

[Close]

BLAST of Lag0031164 vs. ExPASy Swiss-Prot
Match: O65071 (60S ribosomal protein L31 OS=Picea mariana OX=3335 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.4e-49
Identity = 93/118 (78.81%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 4   KSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQSAMGTTDVRVDVKLNK 63
           +  K+R++EV TREYT+NLH+RLHGCTFKK APKA+KE+RKFAQ AMGTTDVR+DVKLNK
Sbjct: 3   EKGKSRRNEVATREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNK 62

Query: 64  HIWSRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLVTVAEVPAEGLKGLGTKVIDEED 122
            +WSRGIRSVPRR+RVRI+RKRNDEEDAK+E YS+VTVAEVP EGL GLGTK+I+EED
Sbjct: 63  AVWSRGIRSVPRRMRVRISRKRNDEEDAKDELYSIVTVAEVPPEGLTGLGTKIIEEED 120

[Close]

BLAST of Lag0031164 vs. ExPASy Swiss-Prot
Match: Q9STR1 (60S ribosomal protein L31-2 OS=Arabidopsis thaliana OX=3702 GN=RPL31B PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 4.0e-49
Identity = 93/115 (80.87%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 7   KARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQSAMGTTDVRVDVKLNKHIW 66
           K RK EVVTREYT+NLH+RLH CTFKKKAPKAIKE+RKFA+  MGT DVRVDVKLNK IW
Sbjct: 5   KGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIW 64

Query: 67  SRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLVTVAEVPAEGLKGLGTKVIDEED 122
           S+GIR  PRR+RVR+ARKRND+EDAKEEF+SLVTVAE+PAEGL GLGTK+I+EED
Sbjct: 65  SKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119

The following BLAST results are available for this feature:

BLAST of Lag0031164 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903425.1	3.9e-57	97.52	60S ribosomal protein L31 [Benincasa hispida]	[more]
XP_022152572.1	5.1e-57	97.52	60S ribosomal protein L31 [Momordica charantia]	[more]
XP_023525745.1	1.9e-56	96.69	60S ribosomal protein L31-like [Cucurbita pepo subsp. pepo]	[more]
XP_031401093.1	1.1e-54	90.08	60S ribosomal protein L31 [Punica granatum] >OWM78362.1 hypothetical protein CDL...	[more]
XP_015888290.1	3.1e-54	91.74	60S ribosomal protein L31 [Ziziphus jujuba]	[more]

BLAST of Lag0031164 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M573	1.1e-54	86.78	60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1	[more]
P46290	1.5e-51	84.30	60S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1	[more]
P51420	1.8e-49	81.74	60S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2	[more]
O65071	2.4e-49	78.81	60S ribosomal protein L31 OS=Picea mariana OX=3335 GN=RPL31 PE=2 SV=1	[more]
Q9STR1	4.0e-49	80.87	60S ribosomal protein L31-2 OS=Arabidopsis thaliana OX=3702 GN=RPL31B PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000054	Ribosomal protein L31e	SMART	SM01380	Ribosomal_L31e_2	coord: 11..94 e-value: 7.8E-47 score: 171.6
IPR000054	Ribosomal protein L31e	PFAM	PF01198	Ribosomal_L31e	coord: 12..93 e-value: 1.6E-40 score: 137.1
IPR000054	Ribosomal protein L31e	PANTHER	PTHR10956	60S RIBOSOMAL PROTEIN L31	coord: 1..121
IPR000054	Ribosomal protein L31e	CDD	cd00463	Ribosomal_L31e	coord: 10..93 e-value: 1.75896E-24 score: 87.2396
IPR023621	Ribosomal protein L31e domain superfamily	GENE3D	3.10.440.10		coord: 8..121 e-value: 3.4E-48 score: 164.2
IPR023621	Ribosomal protein L31e domain superfamily	SUPERFAMILY	54575	Ribosomal protein L31e	coord: 12..93
None	No IPR available	PANTHER	PTHR10956:SF38	OS06G0319700 PROTEIN	coord: 1..121
IPR020052	Ribosomal protein L31e, conserved site	PROSITE	PS01144	RIBOSOMAL_L31E	coord: 55..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031164.1	Lag0031164.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome