Lag0031160 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0031160
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr11: 5426677 .. 5426994 (-)
RNA-Seq ExpressionLag0031160
SyntenyLag0031160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTCATCATTGCAAGTAGTAGGCCGCGACGGAGAGCAACGAAGCGCCGATGAGAGAGCCGATTGCCGGGAGGCTGGCAGCGGCGCCGCTGCTTGGTCCAGGTGCCGGAGCCGCCGCCTCATCCTGAGCCACGACGGCGGTGACGGTTGCGGCGGCAAAGAGGACGGCGCAGGCGATCTTCTTCATCTCCATTGCGATTTCTGTGGTTTTTTTTTGTTAGTTTTGTGTGTGTGGCGTTATCCGGTGAAGAACTCGCGAGGAATCAAACGAGAACGATCACCGAAAAACGCCTTCGCTTTGGAAATTGCTGCCTGA

mRNA sequence

ATGATTTCATCATTGCAAGTAGTAGGCCGCGACGGAGAGCAACGAAGCGCCGATGAGAGAGCCGATTGCCGGGAGGCTGGCAGCGGCGCCGCTGCTTGGTCCAGGTGCCGGAGCCGCCGCCTCATCCTGAGCCACGACGGCGGTGACGGTTGCGGCGGCAAAGAGGACGGCGCAGGCGATCTTCTTCATCTCCATTGCGATTTCTGTGGTTTTTTTTTGTTAGTTTTGTGTGTGTGGCGTTATCCGGTGAAGAACTCGCGAGGAATCAAACGAGAACGATCACCGAAAAACGCCTTCGCTTTGGAAATTGCTGCCTGA

Coding sequence (CDS)

ATGATTTCATCATTGCAAGTAGTAGGCCGCGACGGAGAGCAACGAAGCGCCGATGAGAGAGCCGATTGCCGGGAGGCTGGCAGCGGCGCCGCTGCTTGGTCCAGGTGCCGGAGCCGCCGCCTCATCCTGAGCCACGACGGCGGTGACGGTTGCGGCGGCAAAGAGGACGGCGCAGGCGATCTTCTTCATCTCCATTGCGATTTCTGTGGTTTTTTTTTGTTAGTTTTGTGTGTGTGGCGTTATCCGGTGAAGAACTCGCGAGGAATCAAACGAGAACGATCACCGAAAAACGCCTTCGCTTTGGAAATTGCTGCCTGA

Protein sequence

MISSLQVVGRDGEQRSADERADCREAGSGAAAWSRCRSRRLILSHDGGDGCGGKEDGAGDLLHLHCDFCGFFLLVLCVWRYPVKNSRGIKRERSPKNAFALEIAA
Homology
BLAST of Lag0031160 vs. NCBI nr
Match: KAG6581582.1 (hypothetical protein SDJN03_21584, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.1 bits (305), Expect = 2.9e-24
Identity = 60/89 (67.42%), Postives = 69/89 (77.53%), Query Frame = 0

Query: 3   SSLQVVGRDGEQRSADERADCREAGSGAAAWSRCRSRRLILSHDGGDGCGGKEDGAGDLL 62
           ++  VVGRD EQRSA++RADC +AGSG AAWSRC S+RL++SHDG DGCG +EDGAGDLL
Sbjct: 28  TATMVVGRDREQRSANDRADCWKAGSGTAAWSRCWSQRLVVSHDGADGCGSEEDGAGDLL 87

Query: 63  HLHCDFCGFFLLVL-----CVWRYPVKNS 87
           HLHCD  GFF  V       V RYPVKNS
Sbjct: 88  HLHCDLLGFFSFVFGFGFGFVRRYPVKNS 116

BLAST of Lag0031160 vs. NCBI nr
Match: KAG6577525.1 (hypothetical protein SDJN03_25099, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.4 bits (285), Expect = 6.0e-22
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 4  SLQVVGRDGEQRSADERADCREAGSGAAAWSRCRSRRLILSHDGGDGCGGKEDGAGDLLH 63
          SL VVG DGEQRSADERADC +A SG A WSRCRSRRLILSH GGDGCG +EDGAGDLLH
Sbjct: 17 SLGVVGSDGEQRSADERADCWKANSGGAGWSRCRSRRLILSHGGGDGCGSEEDGAGDLLH 76

Query: 64 LHCDF 69
           HCDF
Sbjct: 77 FHCDF 81

BLAST of Lag0031160 vs. NCBI nr
Match: KAG6583571.1 (hypothetical protein SDJN03_19503, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104.8 bits (260), Expect = 4.8e-19
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 8  VGRDGEQRSADERADCREAGSGAAAWSRCRSRRLILSHDGGDGCGGKEDGAGDLLHLHCD 67
          VGRDGEQRSADERADCR+ G G+A+WSRC SR LI+S+DG DGCG +E+GAGDLLHLHCD
Sbjct: 7  VGRDGEQRSADERADCRKPGGGSASWSRCWSRCLIMSNDGADGCGSEENGAGDLLHLHCD 66

Query: 68 F----CGFF 73
          +    CG +
Sbjct: 67 YLLFGCGVY 75

BLAST of Lag0031160 vs. NCBI nr
Match: KAG6606874.1 (Polyadenylate-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.1 bits (253), Expect = 3.1e-18
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = 0

Query: 1   MISSLQVVGRDGEQRSADERADCREAGSGAAAWSRCRSRRLILSHDGGDGCGGKEDGAGD 60
           M +   V GRDGEQRSADERADCR+AG GAA WSRC SR LI+S+DG D CG +E+GA D
Sbjct: 691 MKAKATVEGRDGEQRSADERADCRKAGGGAAGWSRCWSRCLIMSNDGADRCGSEENGAVD 750

Query: 61  LLHLHCDFCGF 72
           LLHLHCDF  F
Sbjct: 751 LLHLHCDFLLF 761

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6581582.12.9e-2467.42hypothetical protein SDJN03_21584, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6577525.16.0e-2283.08hypothetical protein SDJN03_25099, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583571.14.8e-1971.01hypothetical protein SDJN03_19503, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6606874.13.1e-1870.42Polyadenylate-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0031160.1Lag0031160.1mRNA