Lag0031147 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031147
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DNA-directed RNA polymerase II subunit RPB11-like protein
Location	chr11: 5282247 .. 5286668 (-)
RNA-Seq Expression	Lag0031147
Synteny	Lag0031147

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGCCCCCGACCGATACGAGCGATTCGTCGTCCCAGAAGGGACCAAAAAGTAATTTCACAAACTCTACCCCTTTCTCTATTCGGAGCAATTTTATCAGTCTCTGACGTTTTTGCTTGCTTTGCAGAGTCTCATACGAGAGAGACACGAAGATCATAAATGCGGCGTCGTTCACCATTGAAAGAGAGGAACATACCATTGGAAACATCTTGCGCATGTATGGTGACCCTTTTGAAGATTTTTGATATTTCTGTTTGATAATTGAAGTGTTCGGGTTTTCGTGTTGAGTTGATAATTGGGTTTATTATTTGATGAGCAGGCAGCTGCATCGAGACGAGAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCCCTGCAGTACAAAATCATTGTCCGGGTCAGTTGATTTTCCTCTTATTTTGGGGTTTTGTAATTCGGAATAGGGTTTAAAGGAGCTCTGAACTTGTGGGTTTTAGCATTGTTATTTGGTGTTTGTATTGATTGTCTGAAGATTGTTGAGAATATGTATTGGTTTAAGCTGTTGGGATTGGTAGTGTAGGCGGGTTTAAGTTCAAACCCTGCAAGCTGCAATGTTATTGATTGACCTCACTTGTTGAGTCCTAAGAAGCACAAAAACACTTTAGTTTCGCTAGCGTGTCCGTATCGGACACATGTCAGACACTTAGACACTCCGACACTTGTTGGACACGTATGGGACATTTATTAGTACAATTGATATGTAGCAAACACTAGTTGTACAAAGTCAATATTGGTCTATATCGGACACTTGTTAAGTATACTAAATAGACACTATACTAAATAACCCAAATAATAAATTTTAAGAATGAAATACACTAAACTCATTTTACTAAAAGTGTCAATGTCGTGTCCGTGTCCTAGATTTTATAAAAATGACGTGTCACCGTGTTCGTGTCGTGTCGTATCTGTGTCTCTTGTTCGTATCCGTGCTTCTTAGGTTGAGTCTTGTGCTAATCTACGAATTGGTGAGGAGGAGGGTTAAGGAGTATTTGATCGAGCTTTTAAGTTTAGGAGCATTTATACTCGATCAAATGTTCTTTTTCTTGGTTTCGAGGATATGGTTTAGTTGGGCCTTTAAATTCTGATATATTTGTAATATATCGAAGTTAGAAATGGCATGTTCTTGGTTCAAAAGGCTCGAAAAAAGTACCTCCTAAACCCCAACCCTCCTTGTTTGTGTACTGGAATAGCTATCACTTCCTTAGAACAACACTAACTTATCGCTCTCTCTCGAGCTAAAAGCGGGACTGTAGATGAACTGAACTTTGTATGACTGCCATTGGGATAATTAGAAATATTACTGGGTATTAAATATTAATAGCATGTTGGTAATTATCCAGCGAGTTTGTTAGTAGGTAATGTTTTAGTTGGCTTAGGCCCTCAAACTTTTGGCAGGCACTTGGTATTTGAGGGAGATGAGGATACTTGTTAATGAAAGGCCATTCCCCCGCCCCGTAACTTAACTGTATGTCTAGCAGTCTGTTGTAGATACAATTCAAGGGGATTTCAGCAAGATTATGTTCACTAACTTCACTTATCAAGGTCTTAAATTCCCTTAAGACACTCGAATTTTAGAGACGGTCCTTACATGTTGTTTGGAACCATTAGGATATCAAAAGCTGGAAAACAAGACACTCCAAGTTGAAGAACATATGAGATTTTAATCCATGATGGCCACCTACCTAGGATTTAATATCCTACGAGTTTCCTTGGCAACCAAATGTAGTAGGGTCAGGAGGTTGTCCCGTGAGATTAGTCGAGGTGCGCGCAAGCTGGCCCGAACACTCACGGATATCAAAAATAAAAAATAAAAAATAAAAAAAATAACATCTGGGATTTTAATGATTATAGTGTTTTTTTTCTCTAGTTAATCTTACAAATCTTACTGTATTGTGCTGGTTTGGCTACTTATAATCTTTGTATTAAAAAATGTTTGGTATTTGCATTGGTCTTGCTGAATATTACCTAAACAGAGGGATTCTCCAGTCTATGGTCTGTTATATATGAACCCATTCTTTTTGATTGCTTCTCATTAGAAGTATCCTTTAAGCAAGGAACAAGAGGATGAATGTAACTTGTCTAATCCATCCACCTTATATGTTTGATGGGATGCTTTAATTACATATACTATAGTTTTTTTTTTTTGGATGAAGTAGTACATATATTATACTGTTTTGATGATTTAATATTGTTCTAAAAGCCATTCTACTAGCCAGTTTCTTACCTCCATATAAATATCCCCTTTATGTTCTTGGATCCAAACTTGACTATTTAGAAACTATTTGTTTAACGTTAACTTAACGCGACTTCATTTGTCCCGGTTTCATGGTTATAATGTTTGAGTGAACTCATGACCTTCATGGGTTGGCCCTAATGGTCAATAAGGGCCATAGAAAAAATAAAGGGCTTAGAGGGAATGAGTTCAATCCATGGTGGCCACCTACCTAGGATATTTAATATCCTATGAGTTTCCTTGGCAACCAAATGTAGTAGGACTGTCCCGTGTATGTTGTTCACTGTAACCAGAAGTTGTATCTGAATGATATATTTCCACTCGATATGATTTATCTTTCGTAAACTGATTATTACTGTTCTTCAGATCCATACTACTAGCCAATCGTCGCCGATGCAAGCGTATAATCAAGCCATTAATGATCTGGACAAGGAGCTTGATCATTTGAGAAATGCATTTGAGGTCTGAATTCGCTACTCTCCCTCTAAACTTAGTTTCGTGATAGAACATGCTATAGTTAGCTAATACTCTTGGTGCTGAAGTACGGTTGAAATTGATGGTAAATCTATTGAGGTTAGAAATGATATTGACTTGATGAGCTTGGGATGACTTTTGAAAAAATGTTCATGGGTGAAAGCGCACAATATGTGTTTAGTATTTTTAGAATCCTTTTTATTACTAAATCGTCACTTAAGCCTCATTTGATAATCATTTGGTATTTATTTATTTATTTATTTTTAAATTAAGTTTATAAATACTACTTTTCACATATGAGTTTTTTTTTTTATAACATAAAAATGTTTTCAAAATTAAAGCTAAAGTTTTGAAAAATGAAAAAAATAGGCCCCGTTTGATAACCATTTTGTTTTTTCCCAAATTCCCCACATTGGTTTTCATCCTTGTTAAGGATCCATTTGAATTTCTAGCCAAATTCCAAAAACAAAAACAAGTTTTTGAAAACTATTTTATTTTGTTTTCAAAATTTGACTTGGTTTTTGAAAACAAGGAAGAAAGTAGATACTAAAAAAAAGAAACTTATATGTAGAAGTAGATGTGTATAAGCTTAATTTTAAAAAACCAAGCCCCATTTGATAACCATTTGGTTTTTGGTTTTGGTTTTTGAAAATTAAGCTTATACACATATACTACCACCTCTAAGTTTCTTGGTTTTAGTATCAATCTTCTACCTTGTTTTCAAAAACCAAGTCCAATTTTGGAAACAAACAAAAAATAGTTTTCAAAAACTTGTTTTTTTGTTTTTAAAATTTGGCTAGGAATTCAAATGCAATCTTAATTAGGATGAAAGTCATGGTGGGAAATTTTGGAGAAAACAAACATAATTTTCAAAAACTAAAAACCAAAATAGTTATCAAACGGGACCCAATGATTATCAAACGGAGGAATTTGACTAAGAACTCAAATTTTTTTTTGAGTGTTTTTAATGAGTTAAACACATTTTAGTTTCACCATTCCAATAGTCATCCCAAATGATTCCTAGGATAATAGGAATTGAGGGTATCAAGGGAAGGGACTACCATTATTCTATTAAAAGTGGGCGACCCCGATTCTTTATAGGTCGACTCGATGGGGTCTATAATGGATGACGCTGGAGGGATCGGGTTAATCAAATCTCGATTTTGAGTCGAAAATAATCTAACGAACATGATATTTGGATTCTCATTCTCACATTTTAAACTTCAATCCTTTTCTTTCTGAATCTTACAATGCTTTGTGGATCGGCCAAAGTTTCTAAAAGTTTGATAGGATCAAGGATGGCTACTGAAGTTATGCTTACATAGTTACATTCACAATTATGAGTTTGTAAATAACGATATCGAACAATTTTCGAGTGATTTGTAAACGTGAAGACTGTTTCGCATTCGAGAAAATTGTTCTTAAAAGAATCGTAAACGTAAATCTCCCAACAATTTGCCATTAGAGAAACCAAAAGTTGAACCGAAAACCGATTCGAATGGGCTGCAGCTTTCCAGACTTGCTGAAATTTGAACTGAGATATGAAAGTTTTCAAACTTCTTTCTTGCAGGCTGAGTTCGCTAAGTTCTCAAGGGACTATTGATTTTGCTTTGGGAAAACTTGGTGGAGCTCTGTTCAAGAAGCAGAGACAAGACAATGGTTTGCTGACATGA

mRNA sequence

ATGAATGCCCCCGACCGATACGAGCGATTCGTCGTCCCAGAAGGGACCAAAAAAGTCTCATACGAGAGAGACACGAAGATCATAAATGCGGCGTCGTTCACCATTGAAAGAGAGGAACATACCATTGGAAACATCTTGCGCATGCAGCTGCATCGAGACGAGAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCCCTGCAGTACAAAATCATTGTCCGGATCCATACTACTAGCCAATCGTCGCCGATGCAAGCGTATAATCAAGCCATTAATGATCTGGACAAGGAGCTTGATCATTTGAGAAATGCATTTGAGGTCGACTCGATGGGGTCTATAATGGATGACGCTGGAGGGATCGGGCTGAGTTCGCTAAGTTCTCAAGGGACTATTGATTTTGCTTTGGGAAAACTTGGTGGAGCTCTGTTCAAGAAGCAGAGACAAGACAATGGTTTGCTGACATGA

Coding sequence (CDS)

ATGAATGCCCCCGACCGATACGAGCGATTCGTCGTCCCAGAAGGGACCAAAAAAGTCTCATACGAGAGAGACACGAAGATCATAAATGCGGCGTCGTTCACCATTGAAAGAGAGGAACATACCATTGGAAACATCTTGCGCATGCAGCTGCATCGAGACGAGAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCCCTGCAGTACAAAATCATTGTCCGGATCCATACTACTAGCCAATCGTCGCCGATGCAAGCGTATAATCAAGCCATTAATGATCTGGACAAGGAGCTTGATCATTTGAGAAATGCATTTGAGGTCGACTCGATGGGGTCTATAATGGATGACGCTGGAGGGATCGGGCTGAGTTCGCTAAGTTCTCAAGGGACTATTGATTTTGCTTTGGGAAAACTTGGTGGAGCTCTGTTCAAGAAGCAGAGACAAGACAATGGTTTGCTGACATGA

Protein sequence

MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVDSMGSIMDDAGGIGLSSLSSQGTIDFALGKLGGALFKKQRQDNGLLT

Homology

[Close]

BLAST of Lag0031147 vs. NCBI nr
Match: KAG7036589.1 (Peptidyl-prolyl cis-trans isomerase FKBP42 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.8 bits (582), Expect = 3.2e-56
Identity = 120/144 (83.33%), Postives = 123/144 (85.42%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVDSMGSIMDDAGGI 120
           YKLPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRN FE      ++    G 
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNGFETLGAPRVV----GH 120

Query: 121 GLSSLSSQGTIDFALGKLGGALFK 145
            LS  SSQGT D AL K GGA  K
Sbjct: 121 RLSLQSSQGTTDLALKKHGGAQLK 140

[Close]

BLAST of Lag0031147 vs. NCBI nr
Match: RYR69425.1 (hypothetical protein Ahy_A03g015966 isoform C [Arachis hypogaea])

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-52
Identity = 105/113 (92.92%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNIIRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVDSMGSI 114
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDHL+NAFEV   G +
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDRELDHLKNAFEVCGDGEV 113

[Close]

BLAST of Lag0031147 vs. NCBI nr
Match: RYR22165.1 (hypothetical protein Ahy_B03g067442 isoform D [Arachis hypogaea])

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-52
Identity = 105/113 (92.92%), Postives = 109/113 (96.46%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNIIRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVDSMGSI 114
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLD+ELDHL+NAFEV   G +
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDRELDHLKNAFEVCGDGEV 113

[Close]

BLAST of Lag0031147 vs. NCBI nr
Match: XP_008461807.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo])

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-52
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVD 109
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHL+NAFE +
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAE 108

[Close]

BLAST of Lag0031147 vs. NCBI nr
Match: XP_011651771.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus] >XP_038903613.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Benincasa hispida] >KGN58584.1 hypothetical protein Csa_002674 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-52
Identity = 105/108 (97.22%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVD 109
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHL+NAFE +
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAE 108

[Close]

BLAST of Lag0031147 vs. ExPASy Swiss-Prot
Match: Q38859 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.4e-51
Identity = 96/108 (88.89%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVD 109
           Y+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD+L+N FE +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAE 108

[Close]

BLAST of Lag0031147 vs. ExPASy Swiss-Prot
Match: Q86JJ5 (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=44689 GN=polr2j PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.2e-27
Identity = 52/105 (49.52%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDR+E FV+P+G KKV+  RDTKI NA+ FTI +E+HTIGN++RMQL  D++++FAG
Sbjct: 1   MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAF 106
           Y++PHPL++ + +RI T + ++P++   +++  L +E   L N+F
Sbjct: 61  YRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSF 105

[Close]

BLAST of Lag0031147 vs. ExPASy Swiss-Prot
Match: O08740 (DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus OX=10090 GN=Polr2j PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.5e-27
Identity = 60/120 (50.00%), Postives = 81/120 (67.50%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVDSMGSIMDDAGGI 120
           YK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L   F     G+I D   GI
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFR----GAIKDKQEGI 116

[Close]

BLAST of Lag0031147 vs. ExPASy Swiss-Prot
Match: Q32P79 (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.2e-27
Identity = 60/120 (50.00%), Postives = 81/120 (67.50%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVDSMGSIMDDAGGI 120
           YK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L   F V    +I D   GI
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRV----AIKDKQEGI 116

[Close]

BLAST of Lag0031147 vs. ExPASy Swiss-Prot
Match: P52435 (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.2e-27
Identity = 60/120 (50.00%), Postives = 81/120 (67.50%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNAFEVDSMGSIMDDAGGI 120
           YK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L   F V    +I D   GI
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRV----AIKDKQEGI 116

The following BLAST results are available for this feature:

BLAST of Lag0031147 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036589.1	3.2e-56	83.33	Peptidyl-prolyl cis-trans isomerase FKBP42 [Cucurbita argyrosperma subsp. argyro...	[more]
RYR69425.1	1.6e-52	92.92	hypothetical protein Ahy_A03g015966 isoform C [Arachis hypogaea]	[more]
RYR22165.1	1.6e-52	92.92	hypothetical protein Ahy_B03g067442 isoform D [Arachis hypogaea]	[more]
XP_008461807.1	1.6e-52	97.22	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo]	[more]
XP_011651771.1	1.6e-52	97.22	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus...	[more]

BLAST of Lag0031147 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38859	1.4e-51	88.89	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=...	[more]
Q86JJ5	4.2e-27	49.52	DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=4468...	[more]
O08740	5.5e-27	50.00	DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus OX=10090 GN=Polr2j ...	[more]
Q32P79	7.2e-27	50.00	DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=...	[more]
P52435	7.2e-27	50.00	DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 84..104
None	No IPR available	PANTHER	PTHR13946:SF36	DNA-DIRECTED RNA POLYMERASES II IV AND V SUBUNIT 11	coord: 1..105
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..105
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 31..103 e-value: 1.5E-24 score: 85.5
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 1..111 e-value: 1.8E-46 score: 158.5
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 1..106
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 35..66
IPR037685	RNA polymerase RBP11	CDD	cd06926	RNAP_II_RPB11	coord: 13..105 e-value: 9.23467E-52 score: 157.754

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031147.1	Lag0031147.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity