Lag0031134 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031134
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RNA polymerase sigma factor sigD
Location	chr11: 5160476 .. 5163370 (+)
RNA-Seq Expression	Lag0031134
Synteny	Lag0031134

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACTACTGGCAGCTTATGTTCATTACCCCCTCAATCTCCAACCCTCCCATCCATTTCTCTCTCCTCACTTCCATTGCTCAAAACCCATCTTCCACAGCAATCCCATTTCCCCTTTTCCCCTTTCTCCACCAAATCAGGCTCCAACTTCATCAGCAATGACACATTAGCCCTCCCGTCGCCGTCGGAGACGGCGGTGCTGGCGGTGGAGGCGGCGAGAGAACATGTTCTGGTGGAAGGCAGAGGGGTTTCTGAAGCTTGGAGCTTCAAAACCCTTGAGAGAATGGAGGATAGTTATGGGGATGATGGGGTTGTGGCTTGGAAGAAGAAGAGAAGGAAAAGGAGGAAAGAAATGGGGGAGAAAGCTGAGGAAGATTGGGTTGCTTTGTCCAGTGGCCCCTTGAGGCCTGGATATTTGAGCCCAAAAGAAGAAGCAGTGCTTTGTTTGTGTCTCAAGGTTGGTTTCAGTAAGATTCAATGATCTTGTTTTCTGTTTGTTCCACTATTTGCTTCTTTTGGGAGCTTACTTGAGGGGATCAAATATATTTGTATGCAAAACACTGCAAGATTTTCTGTTCTTCTCATCTTTGTCAATACATGCATGTATGTATTTCTCCTTCATTGAGTGCTTTTGGGGTATCCTAGTAGAAGAAGAAACATGGTTTTCTTCTTCAGTGTTGGAGTTTGAGTTTGTTTTAGATGCTATAACTTCAAAGATTTTGTTTCTCTTCTCCAATTTTTGCCATTTATATTTGATTTAGTGCTTGTTGTTAAGTTTTCATATTGTATTAAGTATAGGGACTAAGATTTAATTAAATCTTTTGCATCAATATGCTTTAGATCATGTAAAATTGTCTGTCATTTTGGTATATAAAGGAAAGCTTCTGCATATTATAAACTTTTCACAGGAGGCAGCACAGCTTGAAAAGGCAAAAACTAGAATTATGGAAACTCAAGAGCATGAACCCACAAATAAGCAATTGGCCATTGCCATGGGCACCAAATTAGGATGTATAGATAAAATTCTTTGTAGAGCCAAAGAATCGAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATCTCGATTGCTTCACCATATCAAGGAAAAGGGTTAAGCCTTCAAGATCTCACTCAGGTAGGTTGTTGCACATATCATCTCATTGAGATTATTGTTTTCTGTGGTTTGCTTAAAGTGTTTGTTCGTTTTTGTAGGAAGGGAACATTGGTCTTCTTAAAGGAGCAGAAAGATTTGAACCAAATAGAGGACATAAGTTATCTACTTATGCTTATTGGTGGATAAGACAAGCTATAATTCGAGCCTTGGATAAAAAGTCGAGACTTGTTAGAATGCCGGTAAGATACTGTCTCGATTTCTCATTTTTCACTTTTTGATTATCATATAGAAGGTGCGGAGAAGAAGTTTTGAATCATACACAGTTGTTGAGGCAGCTTTTGCATTTGTAGTAGTATTGGCAAGTCTACACTGAACATAAGAACAAAATTTTGAATCCTGTTCGGATAGCAGGCGCTCATCGTATAGGCTCGTAACCAACTTAATGAAAAGAAAACCAAGTTCAATTTATGACAAGACACATGAAGTTCCCCATGCCGACTAAGGCGATAAGGAAGAGATTTTTGTTATGTCGCCTTTTCACAACAAATGGAGAAAATAAATCTCTATGAAACCTTTTTTTGTTTTCATTTCATTTCAACAAAATTTTGTTAGCTGCGGATTTTTGAAGTATGGGAAGGTGAATTGGTAATAAGTGAATACTTGGTTAGCTCGCTGTGCGCAGGGTCACATGGGTCAGATGGTAGCAAGAATAGCAGAAGCAAATAATCATCTTGGCATAAAGTTATCACGACCGCCCACCAACAAAGAAATTGCCGAGTCGCTCAATGTTCGTGTTTCAACAGTAAGACTGGTAACCGAAAGGAGTAGGCGCCCGATTTCACTCAGTCAACCAATAACAGACCGAGGTTGCTTAACCCTGCAGGTACCTTTTAGTTTTTTTTACTAAACTCAAGCTTAGTCGTTTACTGAAGGGGACAATCACTTTTTCGATGTTCTGCAAGGAATATCATGAAGGAAGAGAGGCTTGAAATGCATTGCAACTGGCTTTTGATCTTTAGGAACTTTTATTTAGGCTCTCTTCCACATGTCCACAAATCTAACAATCGACGACAATTCCCGAATGCTCGTCTATAACTGAATCTCATTCTCTTTTTAATAATAGGGGCAAGGGTGTCCCAAATGAGAGGCTGAACCTCAAAGGGATTACATATCAATTAAATTATTTTCGATTAGTTGCTGCACTTGGGGTTTGCTTATTCTAATGTCATGAAGAATAAAGTTCTACTTGGACGAAGTTCGATAATTCTCTCTTTTTTTTGGGATAAATGTTATAGTCTGAGCCATCTTATTCGACCTCGACTAATTTTATTAGACAATTACCTTACCCTACACTATTTGGTATTTAGAAATTGGTAGGATGTTTAATCCCAAGTAGATAGCCACCACGGTCGAATTTTCGTGGGAAAGTGATTATGTTTATGTTTCTACGTCAAAGATAACATATCGAAACACTTTTTTTTCGCAATGTTCTGCAGGAGATCATGCCAGGGCCAGACAATCTGACACCAGAGAATATGGTAATAGAAAAACTGATGAAGCAAGAACTGAAGAAGCTTCTTGACACTCTTAGCAAAAGAGAAGCACACATATTGAGCTTGTACTTTGGCCTCAATGGAGAGATTCCACAGTCCTTTGAGGAGATAGGAAAGTCGTTGAATCTCTCGAGAGAGACGGTTCGACAAATCAATATCGCCACATTGTCAAAACTAAAGAAGACTGACATTCTAGACTATCTTAAAGATTATTTAGTGTAG

mRNA sequence

ATGGCCACTACTGGCAGCTTATGTTCATTACCCCCTCAATCTCCAACCCTCCCATCCATTTCTCTCTCCTCACTTCCATTGCTCAAAACCCATCTTCCACAGCAATCCCATTTCCCCTTTTCCCCTTTCTCCACCAAATCAGGCTCCAACTTCATCAGCAATGACACATTAGCCCTCCCGTCGCCGTCGGAGACGGCGGTGCTGGCGGTGGAGGCGGCGAGAGAACATGTTCTGGTGGAAGGCAGAGGGGTTTCTGAAGCTTGGAGCTTCAAAACCCTTGAGAGAATGGAGGATAGTTATGGGGATGATGGGGTTGTGGCTTGGAAGAAGAAGAGAAGGAAAAGGAGGAAAGAAATGGGGGAGAAAGCTGAGGAAGATTGGGTTGCTTTGTCCAGTGGCCCCTTGAGGCCTGGATATTTGAGCCCAAAAGAAGAAGCAGTGCTTTGTTTGTGTCTCAAGGAGGCAGCACAGCTTGAAAAGGCAAAAACTAGAATTATGGAAACTCAAGAGCATGAACCCACAAATAAGCAATTGGCCATTGCCATGGGCACCAAATTAGGATGTATAGATAAAATTCTTTGTAGAGCCAAAGAATCGAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATCTCGATTGCTTCACCATATCAAGGAAAAGGGTTAAGCCTTCAAGATCTCACTCAGGAAGGGAACATTGGTCTTCTTAAAGGAGCAGAAAGATTTGAACCAAATAGAGGACATAAGTTATCTACTTATGCTTATTGGTGGATAAGACAAGCTATAATTCGAGCCTTGGATAAAAAGTCGAGACTTGTTAGAATGCCGGGTCACATGGGTCAGATGGTAGCAAGAATAGCAGAAGCAAATAATCATCTTGGCATAAAGTTATCACGACCGCCCACCAACAAAGAAATTGCCGAGTCGCTCAATGTTCGTGTTTCAACAGTAAGACTGGTAACCGAAAGGAGTAGGCGCCCGATTTCACTCAGTCAACCAATAACAGACCGAGGTTGCTTAACCCTGCAGGAGATCATGCCAGGGCCAGACAATCTGACACCAGAGAATATGGTAATAGAAAAACTGATGAAGCAAGAACTGAAGAAGCTTCTTGACACTCTTAGCAAAAGAGAAGCACACATATTGAGCTTGTACTTTGGCCTCAATGGAGAGATTCCACAGTCCTTTGAGGAGATAGGAAAGTCGTTGAATCTCTCGAGAGAGACGGTTCGACAAATCAATATCGCCACATTGTCAAAACTAAAGAAGACTGACATTCTAGACTATCTTAAAGATTATTTAGTGTAG

Coding sequence (CDS)

ATGGCCACTACTGGCAGCTTATGTTCATTACCCCCTCAATCTCCAACCCTCCCATCCATTTCTCTCTCCTCACTTCCATTGCTCAAAACCCATCTTCCACAGCAATCCCATTTCCCCTTTTCCCCTTTCTCCACCAAATCAGGCTCCAACTTCATCAGCAATGACACATTAGCCCTCCCGTCGCCGTCGGAGACGGCGGTGCTGGCGGTGGAGGCGGCGAGAGAACATGTTCTGGTGGAAGGCAGAGGGGTTTCTGAAGCTTGGAGCTTCAAAACCCTTGAGAGAATGGAGGATAGTTATGGGGATGATGGGGTTGTGGCTTGGAAGAAGAAGAGAAGGAAAAGGAGGAAAGAAATGGGGGAGAAAGCTGAGGAAGATTGGGTTGCTTTGTCCAGTGGCCCCTTGAGGCCTGGATATTTGAGCCCAAAAGAAGAAGCAGTGCTTTGTTTGTGTCTCAAGGAGGCAGCACAGCTTGAAAAGGCAAAAACTAGAATTATGGAAACTCAAGAGCATGAACCCACAAATAAGCAATTGGCCATTGCCATGGGCACCAAATTAGGATGTATAGATAAAATTCTTTGTAGAGCCAAAGAATCGAGAGATCGACTCATTCGATGCTATAGCAAACTAGTCATCTCGATTGCTTCACCATATCAAGGAAAAGGGTTAAGCCTTCAAGATCTCACTCAGGAAGGGAACATTGGTCTTCTTAAAGGAGCAGAAAGATTTGAACCAAATAGAGGACATAAGTTATCTACTTATGCTTATTGGTGGATAAGACAAGCTATAATTCGAGCCTTGGATAAAAAGTCGAGACTTGTTAGAATGCCGGGTCACATGGGTCAGATGGTAGCAAGAATAGCAGAAGCAAATAATCATCTTGGCATAAAGTTATCACGACCGCCCACCAACAAAGAAATTGCCGAGTCGCTCAATGTTCGTGTTTCAACAGTAAGACTGGTAACCGAAAGGAGTAGGCGCCCGATTTCACTCAGTCAACCAATAACAGACCGAGGTTGCTTAACCCTGCAGGAGATCATGCCAGGGCCAGACAATCTGACACCAGAGAATATGGTAATAGAAAAACTGATGAAGCAAGAACTGAAGAAGCTTCTTGACACTCTTAGCAAAAGAGAAGCACACATATTGAGCTTGTACTTTGGCCTCAATGGAGAGATTCCACAGTCCTTTGAGGAGATAGGAAAGTCGTTGAATCTCTCGAGAGAGACGGTTCGACAAATCAATATCGCCACATTGTCAAAACTAAAGAAGACTGACATTCTAGACTATCTTAAAGATTATTTAGTGTAG

Protein sequence

MATTGSLCSLPPQSPTLPSISLSSLPLLKTHLPQQSHFPFSPFSTKSGSNFISNDTLALPSPSETAVLAVEAAREHVLVEGRGVSEAWSFKTLERMEDSYGDDGVVAWKKKRRKRRKEMGEKAEEDWVALSSGPLRPGYLSPKEEAVLCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIAMGTKLGCIDKILCRAKESRDRLIRCYSKLVISIASPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRMPGHMGQMVARIAEANNHLGIKLSRPPTNKEIAESLNVRVSTVRLVTERSRRPISLSQPITDRGCLTLQEIMPGPDNLTPENMVIEKLMKQELKKLLDTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETVRQINIATLSKLKKTDILDYLKDYLV

Homology

[Close]

BLAST of Lag0031134 vs. NCBI nr
Match: XP_038906215.1 (RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida])

HSP 1 Score: 755.0 bits (1948), Expect = 3.6e-214
Identity = 381/436 (87.39%), Postives = 408/436 (93.58%), Query Frame = 0


Query: 1   MATTGSLCSLPPQSPTLPSISLSSLPLLKTHLPQQSHFPFSPFSTKSGSNFISNDTLALP 60
           MATT SLCSLP QSPTLPSISLSSLP LKTHLPQQ HFPF PFSTK G+NFI+NDTL LP
Sbjct: 1   MATTSSLCSLPTQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGTNFINNDTLTLP 60

Query: 61  SPSETAVLAVEAAREHVLVEGRGVSEAWSFKTLERMEDSYGDDGVVAWKKKRRKRRKEMG 120
            P E AVL VEAAREHVLV+ RG SE WS K LERME S G DG VAWKKKRRKRRKE+G
Sbjct: 61  PPPEAAVLTVEAAREHVLVDARGFSEDWSCKNLERMEGSCGGDGTVAWKKKRRKRRKEVG 120

Query: 121 EKAEEDWVALSSGPLRPGYLSPKEEAVLCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAI 180
            KAEE+W ALSSGPLRPGYLSPKEEA LCLCLKEAAQLE+AKTRIMETQEHEPTN+QLAI
Sbjct: 121 LKAEENWAALSSGPLRPGYLSPKEEAELCLCLKEAAQLEEAKTRIMETQEHEPTNRQLAI 180

Query: 181 AMGTKLGCIDKILCRAKESRDRLIRCYSKLVISIASPYQGKGLSLQDLTQEGNIGLLKGA 240
           A+GTKLG ID+ILCRA+ESRDRLIRCYSKLVISIA+PYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 ALGTKLGSIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRMPGHMGQMVARIAEANNHLGIKLSR 300
           ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVR+PGHMGQMVARIAEANNHLG+KLSR
Sbjct: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEANNHLGLKLSR 300

Query: 301 PPTNKEIAESLNVRVSTVRLVTERSRRPISLSQPITDRGCLTLQEIMPGPDNLTPENMVI 360
           PPT+KE+AESL VRVSTVRLVTERS+RPIS++QP+ DRGCLTLQEIMPGPDNLTPENMV+
Sbjct: 301 PPTHKEVAESLKVRVSTVRLVTERSKRPISINQPVNDRGCLTLQEIMPGPDNLTPENMVM 360

Query: 361 EKLMKQELKKLLDTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETVRQINIATLS 420
            KLMKQE+K+LL+TLSKREAHILSLYFGLNGEIP+SFEEIGKSLNLSRET+RQIN+ATLS
Sbjct: 361 RKLMKQEVKRLLNTLSKREAHILSLYFGLNGEIPRSFEEIGKSLNLSRETIRQINVATLS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLK TDILDYLK+YLV
Sbjct: 421 KLKNTDILDYLKEYLV 436

[Close]

BLAST of Lag0031134 vs. NCBI nr
Match: XP_004149725.1 (RNA polymerase sigma factor sigD, chloroplastic [Cucumis sativus] >KGN58573.1 hypothetical protein Csa_000720 [Cucumis sativus])

HSP 1 Score: 740.3 bits (1910), Expect = 9.3e-210
Identity = 375/436 (86.01%), Postives = 398/436 (91.28%), Query Frame = 0


Query: 1   MATTGSLCSLPPQSPTLPSISLSSLPLLKTHLPQQSHFPFSPFSTKSGSNFISNDTLALP 60
           MATT SLCSLP QSPTLPSISLSSLP LKTHLPQQ HFPF PFSTK G N ISNDTL LP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60

Query: 61  SPSETAVLAVEAAREHVLVEGRGVSEAWSFKTLERMEDSYGDDGVVAWKKKRRKRRKEMG 120
            P E AVLAVEAA EHVLVE +G SE WS K +E+ME+S   DG VAWKKKRRKRRKE+G
Sbjct: 61  PPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVG 120

Query: 121 EKAEEDWVALSSGPLRPGYLSPKEEAVLCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAI 180
            KAEE+W+ALSSGPLRPGYLSPKEEA LCLCLKEA  LE  KTRIMETQEHEPTNKQLAI
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAI 180

Query: 181 AMGTKLGCIDKILCRAKESRDRLIRCYSKLVISIASPYQGKGLSLQDLTQEGNIGLLKGA 240
           AMGTK GCID+ILCRA+ESRDRLIRCYSKLVISIA+PYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 AMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRMPGHMGQMVARIAEANNHLGIKLSR 300
           ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVR+PGHMGQMVARIAE NNHLGIKLSR
Sbjct: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSR 300

Query: 301 PPTNKEIAESLNVRVSTVRLVTERSRRPISLSQPITDRGCLTLQEIMPGPDNLTPENMVI 360
           PPTNKE+AESL V +ST+RLV ERS+RPIS++QP+ DR CLTLQEIMPGPDNLTPENMV+
Sbjct: 301 PPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNLTPENMVM 360

Query: 361 EKLMKQELKKLLDTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETVRQINIATLS 420
            KLMKQELK+LL+TLSKREA ILSLYFGLNGEIPQSFEEIGKSLNLSRET+RQ NIATLS
Sbjct: 361 RKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIATLS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLKKTD+LDYLKDYLV
Sbjct: 421 KLKKTDVLDYLKDYLV 436

[Close]

BLAST of Lag0031134 vs. NCBI nr
Match: KAA0048391.1 (RNA polymerase sigma factor sigD [Cucumis melo var. makuwa] >TYJ99868.1 RNA polymerase sigma factor sigD [Cucumis melo var. makuwa])

HSP 1 Score: 739.6 bits (1908), Expect = 1.6e-209
Identity = 375/436 (86.01%), Postives = 402/436 (92.20%), Query Frame = 0


Query: 1   MATTGSLCSLPPQSPTLPSISLSSLPLLKTHLPQQSHFPFSPFSTKSGSNFISNDTLALP 60
           MATT SLCSLP QSPTLPSISLSSLP LKTHLPQQ HFPF PFS+K G NFIS DTL LP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLP 60

Query: 61  SPSETAVLAVEAAREHVLVEGRGVSEAWSFKTLERMEDSYGDDGVVAWKKKRRKRRKEMG 120
            P E AVLAVEAA EHVLVE RG SE WS K +ERME+S   DG VAWKKKRRKRRKE+G
Sbjct: 61  PPPEAAVLAVEAAGEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVG 120

Query: 121 EKAEEDWVALSSGPLRPGYLSPKEEAVLCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAI 180
            KAEE+W+ALSSGPLRPGYLSPKEEA LCLCLKEA  LEK K+RIMETQEHEPTNKQLAI
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAI 180

Query: 181 AMGTKLGCIDKILCRAKESRDRLIRCYSKLVISIASPYQGKGLSLQDLTQEGNIGLLKGA 240
           AMGTK GCID+ILCRA+ESRDRLIRCYSKLVISIA+PYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 AMGTKPGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRMPGHMGQMVARIAEANNHLGIKLSR 300
           ERFEP+RGHKLSTYAYWWIRQAIIRALDKKSRLVR+PGHMGQMVARIAE NNHLGIKLSR
Sbjct: 241 ERFEPSRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSR 300

Query: 301 PPTNKEIAESLNVRVSTVRLVTERSRRPISLSQPITDRGCLTLQEIMPGPDNLTPENMVI 360
           PPTN+E+AESL VRVSTVRLV ERS+RPIS++QP+ DR CLTLQEI+PGPDNLTPENMV+
Sbjct: 301 PPTNEEVAESLKVRVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVM 360

Query: 361 EKLMKQELKKLLDTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETVRQINIATLS 420
            KLMKQELK+LL+TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRET+R+INIATLS
Sbjct: 361 RKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLKKT++LDY+KDYLV
Sbjct: 421 KLKKTNVLDYIKDYLV 436

[Close]

BLAST of Lag0031134 vs. NCBI nr
Match: XP_022152696.1 (RNA polymerase sigma factor sigD, chloroplastic [Momordica charantia])

HSP 1 Score: 727.2 bits (1876), Expect = 8.1e-206
Identity = 374/436 (85.78%), Postives = 400/436 (91.74%), Query Frame = 0


Query: 1   MATTGSLCSLPPQSPTLPSISLSSLPLLKTHLPQQSHFPFSPFSTKSGSNFISNDTLALP 60
           MAT  SLCSLP QSPTLPSISLSSLP LKTHLP QSHF F PFSTK GSNF  N+T+A+ 
Sbjct: 1   MATASSLCSLPTQSPTLPSISLSSLPSLKTHLPPQSHFLFPPFSTKLGSNFDWNETIAVL 60

Query: 61  SPSETAVLAVEAAREHVLVEGRGVSEAWSFKTLERMEDSYGDDGVVAWKKKRRKRRKEMG 120
            P ETAVLAVEAAREHVL E   VSE WS   LER+E+S GDDG V WKKKRRKRRKE+G
Sbjct: 61  PPQETAVLAVEAAREHVLPEPTWVSETWSCGKLERVEESCGDDGFVGWKKKRRKRRKEVG 120

Query: 121 EKAEEDWVALSSGPLRPGYLSPKEEAVLCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAI 180
           EKAEE  VALSSGPLRPGYL+PKEEA LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAI
Sbjct: 121 EKAEEGGVALSSGPLRPGYLTPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAI 180

Query: 181 AMGTKLGCIDKILCRAKESRDRLIRCYSKLVISIASPYQGKGLSLQDLTQEGNIGLLKGA 240
           A GT L CID+ILCRAKESRDRLI+CYSKLV+SIA+PYQGKGLSLQDLTQEGNIGLL GA
Sbjct: 181 ATGTNLRCIDRILCRAKESRDRLIQCYSKLVVSIAAPYQGKGLSLQDLTQEGNIGLLIGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRMPGHMGQMVARIAEANNHLGIKLSR 300
           ERFEPNRGHKLSTYAYWWIRQAIIRALD KSRLVR+PGHMGQMVARIAEANNHLGIKLSR
Sbjct: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDNKSRLVRLPGHMGQMVARIAEANNHLGIKLSR 300

Query: 301 PPTNKEIAESLNVRVSTVRLVTERSRRPISLSQPITDRGCLTLQEIMPGPDNLTPENMVI 360
            PT+KEIAESLNVRVSTV+LVTERS+RPISL+QP+TDRGCLTLQEIMPGPDNLTPENMV+
Sbjct: 301 LPTHKEIAESLNVRVSTVKLVTERSKRPISLNQPVTDRGCLTLQEIMPGPDNLTPENMVM 360

Query: 361 EKLMKQELKKLLDTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETVRQINIATLS 420
            KLMKQEL++LL+TLSKREAHI+ LYFGLNGEIPQSFEEIGKS+NLSRETVR++NIA LS
Sbjct: 361 RKLMKQELRRLLNTLSKREAHIMRLYFGLNGEIPQSFEEIGKSMNLSRETVRRVNIAALS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLKKTDILDYLKDY+V
Sbjct: 421 KLKKTDILDYLKDYVV 436

[Close]

BLAST of Lag0031134 vs. NCBI nr
Match: XP_008461821.1 (PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Cucumis melo])

HSP 1 Score: 719.9 bits (1857), Expect = 1.3e-203
Identity = 364/423 (86.05%), Postives = 391/423 (92.43%), Query Frame = 0


Query: 14  SPTLPSISLSSLPLLKTHLPQQSHFPFSPFSTKSGSNFISNDTLALPSPSETAVLAVEAA 73
           SPTLPSISLSSLP LKTHLPQQ HFPF PFS+K G NFIS DTL LP P E AVLAVEAA
Sbjct: 51  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLPPPPEAAVLAVEAA 110

Query: 74  REHVLVEGRGVSEAWSFKTLERMEDSYGDDGVVAWKKKRRKRRKEMGEKAEEDWVALSSG 133
            EHVLVE RG SE WS K +ERME+S   DG VAWKKKRRKRRKE+G KAEE+W+ALSSG
Sbjct: 111 GEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSG 170

Query: 134 PLRPGYLSPKEEAVLCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIAMGTKLGCIDKIL 193
           PLRPGYLSPKEEA LCLCLKEA  LEK K+RIMETQEHEPTNKQLAIAMGTK GCID+IL
Sbjct: 171 PLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAIAMGTKPGCIDRIL 230

Query: 194 CRAKESRDRLIRCYSKLVISIASPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLST 253
           CRA+ESRDRLIRCYSKLVISIA+PYQGKGLSLQDLTQEGNIGLLKGAERFEP+RGHKLST
Sbjct: 231 CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPSRGHKLST 290

Query: 254 YAYWWIRQAIIRALDKKSRLVRMPGHMGQMVARIAEANNHLGIKLSRPPTNKEIAESLNV 313
           YAYWWIRQAIIRALDKKSRLVR+PGHMGQMVARIAE NNHLGIKLSRPPTN+E+AESL V
Sbjct: 291 YAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNEEVAESLKV 350

Query: 314 RVSTVRLVTERSRRPISLSQPITDRGCLTLQEIMPGPDNLTPENMVIEKLMKQELKKLLD 373
           RVSTVRLV ERS+RPIS++QP+ DR CLTLQEI+PGPDNLTPENMV+ KLMKQELK+LL+
Sbjct: 351 RVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVMRKLMKQELKRLLN 410

Query: 374 TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETVRQINIATLSKLKKTDILDYLKD 433
           TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRET+R+INIATLSKLKKT++LDY+KD
Sbjct: 411 TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKD 470

Query: 434 YLV 437
           YLV
Sbjct: 471 YLV 473

[Close]

BLAST of Lag0031134 vs. ExPASy Swiss-Prot
Match: Q9ZSL6 (RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGD PE=2 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 9.3e-88
Identity = 203/444 (45.72%), Postives = 278/444 (62.61%), Query Frame = 0


Query: 4   TGSLCSLPPQSPTLPSISLSSLPLLK-THLPQQSHFPFSPFSTKSGSNFISNDTLALPSP 63
           T ++C  PP    +P+IS    PLL+ TH  Q S    SPFS K  +  +  DT      
Sbjct: 10  TATMCPSPP----VPTIS----PLLRTTHQCQPSPSLSSPFSIKLSTALVCGDT------ 69

Query: 64  SETAVLAVEAAREHVLVEGRGVSEAWSFKTLERMEDSYGDDGVVAWKKKRRKRR------ 123
             T    V+++   V+++     E W  ++ +R             +K+RR+RR      
Sbjct: 70  --TVDRVVDSS---VMIK----PEKWGIQSEKR-------------RKRRRRRRVGYERL 129

Query: 124 -----KEMGEKAEEDWVALS-SGPLRPGYLSPKEEAVLCLCLKEAAQLEKAKTRIMETQE 183
                +  G +AE + +++   G  R G+LS  EE  LCL LKE A+LE   T +   +E
Sbjct: 130 EPEEEENAGVEAEAETISVPVVGASRSGFLSRLEEVQLCLYLKEGAKLENLGTSV---EE 189

Query: 184 HEPTNKQLAIAMGTKLGCIDKILCRAKESRDRLIRCYSKLVISIASPYQGKGLSLQDLTQ 243
           +E  +  LA   G K    ++ILCR KE+R+++ RCY +LV+SIA+ YQGKGL+LQDL Q
Sbjct: 190 NEMVSVLLASGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQ 249

Query: 244 EGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRMPGHMGQMVARIAEA 303
           EG+IGLL+GAERF+P+RG+KLSTY YWWI+QAI+RA+  KSRLV++PG M ++ A++AEA
Sbjct: 250 EGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEA 309

Query: 304 NNHLGIKLSRPPTNKEIAESLNVRVSTVRLVTERSRRPISLSQPITDRGCLTLQEIMPGP 363
           +N L  KL R P+ +EIAE LN+ VS VRL  ERSR P+SL +  +  G +TLQEI+ GP
Sbjct: 310 SNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGP 369

Query: 364 DNLTPENMVIEKLMKQELKKLLDTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRET 423
           D   PE MV  + MK E+++LL +L+ RE+ +L LYFGLNGE P SFEEIGKSL LSRE 
Sbjct: 370 DETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRER 414

Query: 424 VRQINIATLSKLKKTDILDYLKDY 435
           VRQIN   L KL+    ++ LK Y
Sbjct: 430 VRQINGIALKKLRNVHNVNDLKIY 414

[Close]

BLAST of Lag0031134 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.5e-50
Identity = 117/344 (34.01%), Postives = 198/344 (57.56%), Query Frame = 0


Query: 94  ERMEDSYGDDGVVAWKKKRRKRRKEMGEK-AEEDWVALSSGPL-RPGYLSPKEEAVLCLC 153
           E +E    +D   + K  + +RR +  +K   ED + L    + R   L   EE  L   
Sbjct: 47  EFLEPQTDEDDAKSGKAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARK 106

Query: 154 LKEAAQLEKAKTRIMETQEHEPTNKQLAIAMGTKLGCIDKILCRAKESRDRLIRCYSKLV 213
           + +  +LE+ + R+ E  E +P + + A A+   L      L   + ++D++++   +LV
Sbjct: 107 IADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLV 166

Query: 214 ISIASPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKS 273
           +SIA  Y  +GLS QDL QEG++GL++ AE+F+  +G+K STYA WWIRQAI RA+  +S
Sbjct: 167 VSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQS 226

Query: 274 RLVRMPGHMGQMVARIAEANNHLGIKLSRPPTNKEIAESLNVRVSTVRLVTERSRRPISL 333
           R +R+P H+ + ++RI +    L  ++ R PT +EIA  + + +  +R + + ++ PISL
Sbjct: 227 RTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISL 286

Query: 334 SQPITDRGCLTLQEIMPGPDNLTPENMVIEKLMKQELKKLLDTLSKREAHILSLYFGLNG 393
             PI       L + +   D  TPE+ V + L++++L+K+LD+LS RE  +L L +GL+ 
Sbjct: 287 ETPIGKEEDSRLGDFIES-DGETPEDQVSKNLLREDLEKVLDSLSPRERDVLRLRYGLDD 346

Query: 394 EIPQSFEEIGKSLNLSRETVRQINIATLSKLKKTDILDYLKDYL 436
              ++ EEIG+  N++RE +RQI    L KL+  +    LK+Y+
Sbjct: 347 GRMKTLEEIGQIFNVTRERIRQIEAKALRKLRHPNRNSVLKEYI 389

[Close]

BLAST of Lag0031134 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 199.9 bits (507), Expect = 5.9e-50
Identity = 117/340 (34.41%), Postives = 196/340 (57.65%), Query Frame = 0


Query: 97  EDSYGDDGVVAWKKKRRKRRKEMGEKAEEDWVALSSGPL-RPGYLSPKEEAVLCLCLKEA 156
           EDS G+D   A K K + R+        ED + L    + R   L   EE  L   + + 
Sbjct: 65  EDSVGEDEDAAAKAKAKVRK-----TYTEDSIRLYLQEIGRIRLLRADEEIELARQIADL 124

Query: 157 AQLEKAKTRIMETQEHEPTNKQLAIAMGTKLGCIDKILCRAKESRDRLIRCYSKLVISIA 216
             LE+ +  ++E  +  P++ + A A+ + L    + L R + ++D++++   +LV+SIA
Sbjct: 125 LALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIA 184

Query: 217 SPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVR 276
             Y  +GLS QDL QEG++GL++ AE+F+  +G+K STYA WWIRQAI RA+  +SR +R
Sbjct: 185 KKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIR 244

Query: 277 MPGHMGQMVARIAEANNHLGIKLSRPPTNKEIAESLNVRVSTVRLVTERSRRPISLSQPI 336
           +P H+ + ++RI +    L  ++ R PT +EIA  + + +  +R + + ++ PISL  PI
Sbjct: 245 LPVHLYETISRIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPI 304

Query: 337 TDRGCLTLQEIMPGPDNLTPENMVIEKLMKQELKKLLDTLSKREAHILSLYFGLNGEIPQ 396
                  L + +   D  TPE+ V + L++++L+ +L TLS RE  +L L +GL+    +
Sbjct: 305 GKEEDSRLGDFIEA-DGETPEDEVAKNLLREDLEGVLSTLSPRERDVLRLRYGLDDGRMK 364

Query: 397 SFEEIGKSLNLSRETVRQINIATLSKLKKTDILDYLKDYL 436
           + EEIG+  N++RE +RQI    L KL+  +    LK+Y+
Sbjct: 365 TLEEIGQLFNVTRERIRQIEAKALRKLRHPNRNSILKEYI 398

[Close]

BLAST of Lag0031134 vs. ExPASy Swiss-Prot
Match: O22056 (RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV=2)

HSP 1 Score: 195.3 bits (495), Expect = 1.5e-48
Identity = 107/297 (36.03%), Postives = 177/297 (59.60%), Query Frame = 0


Query: 140 LSPKEEAVLCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIAMGTKLGCIDKILCRAKES 199
           L+ +EE  L   +++  +LE+ +T + E    +PT  Q A A G     + + +      
Sbjct: 273 LTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLC 332

Query: 200 RDRLIRCYSKLVISIASPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWI 259
           +D++I+   +LVISIA  YQG G++LQDL QEG  GL++GAE+F+  +G K STYA+WWI
Sbjct: 333 KDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWI 392

Query: 260 RQAIIRALDKKSRLVRMPGHMGQMVARIAEANNHLGIKLSRPPTNKEIAESLNVRVSTVR 319
           +QA+ ++L  +SR++R+P HM +   R+ EA   L  +  + P N+EIAE+  + +  + 
Sbjct: 393 KQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLM 452

Query: 320 LVTERSRRPISLSQPITDRGCLTLQEIMPGPDNLTPENMVIEKLMKQELKKLLDTLSKRE 379
            V    + P SL Q I     L   E++  P+ +T E+++I++ M+Q+L K+LD+L  RE
Sbjct: 453 AVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTRE 512

Query: 380 AHILSLYFGLNGEIPQSFEEIGKSLNLSRETVRQINIATLSKLKKTDILDYLKDYLV 437
             ++   FG+     ++ +EIG+ + +SRE VRQI  +   KLK     ++L+ YLV
Sbjct: 513 KQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of Lag0031134 vs. ExPASy Swiss-Prot
Match: Q9LD95 (RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIGF PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.6e-47
Identity = 112/323 (34.67%), Postives = 182/323 (56.35%), Query Frame = 0


Query: 102 DDGVVAWKKKRRKRRKEMGEKAEEDWVALSSGPLRPGYLSPKEEAVLCLCLKEAAQLEKA 161
           D+G V  K   +K+ K+ G   ++       GP     L+ KEEA L   ++   +LEK 
Sbjct: 211 DEGYVPQKTSAKKKYKQ-GADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKV 270

Query: 162 KTRIMETQEHEPTNKQLAIAMGTKLGCIDKILCRAKESRDRLIRCYSKLVISIASPYQGK 221
           KT++      EPT  + A AMG     +   + R + SR++LI    +LV+ IA  YQ +
Sbjct: 271 KTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNR 330

Query: 222 GLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRMPGHMG 281
           GL+ QDL QEG++GL+K  E+F+P  G + +TYAYWWIRQ+I +++ + SR +R+P ++ 
Sbjct: 331 GLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVY 390

Query: 282 QMVARIAEANNHLGIKLSRPPTNKEIAESLNVRVSTVRLVTERSRRPISLSQPITDRGCL 341
            ++ +++EA      + +  P+ +E+A  + V    +  +   +R P+S+ QPI      
Sbjct: 391 MLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDT 450

Query: 342 TLQEIMPGPDNLTPENMVIEKLMKQELKKLLDTLSKREAHILSLYFGLNGEIPQSFEEIG 401
           T QEI P     TP   V ++LM+  ++ LL+ LS +E  I+ L FG++G   +S  EIG
Sbjct: 451 TFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIG 510

Query: 402 KSLNLSRETVRQINIATLSKLKK 425
           +   LS+E VRQ+    L +LK+
Sbjct: 511 EIYGLSKERVRQLESRALYRLKQ 532

[Close]

BLAST of Lag0031134 vs. ExPASy TrEMBL
Match: A0A0A0L9T0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G687740 PE=3 SV=1)

HSP 1 Score: 740.3 bits (1910), Expect = 4.5e-210
Identity = 375/436 (86.01%), Postives = 398/436 (91.28%), Query Frame = 0


Query: 1   MATTGSLCSLPPQSPTLPSISLSSLPLLKTHLPQQSHFPFSPFSTKSGSNFISNDTLALP 60
           MATT SLCSLP QSPTLPSISLSSLP LKTHLPQQ HFPF PFSTK G N ISNDTL LP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSTKLGPNIISNDTLTLP 60

Query: 61  SPSETAVLAVEAAREHVLVEGRGVSEAWSFKTLERMEDSYGDDGVVAWKKKRRKRRKEMG 120
            P E AVLAVEAA EHVLVE +G SE WS K +E+ME+S   DG VAWKKKRRKRRKE+G
Sbjct: 61  PPPEAAVLAVEAAGEHVLVEAKGFSEDWSSKNVEKMEESCVGDGTVAWKKKRRKRRKEVG 120

Query: 121 EKAEEDWVALSSGPLRPGYLSPKEEAVLCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAI 180
            KAEE+W+ALSSGPLRPGYLSPKEEA LCLCLKEA  LE  KTRIMETQEHEPTNKQLAI
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLENVKTRIMETQEHEPTNKQLAI 180

Query: 181 AMGTKLGCIDKILCRAKESRDRLIRCYSKLVISIASPYQGKGLSLQDLTQEGNIGLLKGA 240
           AMGTK GCID+ILCRA+ESRDRLIRCYSKLVISIA+PYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 AMGTKSGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRMPGHMGQMVARIAEANNHLGIKLSR 300
           ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVR+PGHMGQMVARIAE NNHLGIKLSR
Sbjct: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSR 300

Query: 301 PPTNKEIAESLNVRVSTVRLVTERSRRPISLSQPITDRGCLTLQEIMPGPDNLTPENMVI 360
           PPTNKE+AESL V +ST+RLV ERS+RPIS++QP+ DR CLTLQEIMPGPDNLTPENMV+
Sbjct: 301 PPTNKEVAESLKVHLSTIRLVMERSKRPISINQPVNDRSCLTLQEIMPGPDNLTPENMVM 360

Query: 361 EKLMKQELKKLLDTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETVRQINIATLS 420
            KLMKQELK+LL+TLSKREA ILSLYFGLNGEIPQSFEEIGKSLNLSRET+RQ NIATLS
Sbjct: 361 RKLMKQELKRLLNTLSKREARILSLYFGLNGEIPQSFEEIGKSLNLSRETIRQTNIATLS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLKKTD+LDYLKDYLV
Sbjct: 421 KLKKTDVLDYLKDYLV 436

[Close]

BLAST of Lag0031134 vs. ExPASy TrEMBL
Match: A0A5D3BP27 (RNA polymerase sigma factor sigD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00100 PE=3 SV=1)

HSP 1 Score: 739.6 bits (1908), Expect = 7.6e-210
Identity = 375/436 (86.01%), Postives = 402/436 (92.20%), Query Frame = 0


Query: 1   MATTGSLCSLPPQSPTLPSISLSSLPLLKTHLPQQSHFPFSPFSTKSGSNFISNDTLALP 60
           MATT SLCSLP QSPTLPSISLSSLP LKTHLPQQ HFPF PFS+K G NFIS DTL LP
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLP 60

Query: 61  SPSETAVLAVEAAREHVLVEGRGVSEAWSFKTLERMEDSYGDDGVVAWKKKRRKRRKEMG 120
            P E AVLAVEAA EHVLVE RG SE WS K +ERME+S   DG VAWKKKRRKRRKE+G
Sbjct: 61  PPPEAAVLAVEAAGEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVG 120

Query: 121 EKAEEDWVALSSGPLRPGYLSPKEEAVLCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAI 180
            KAEE+W+ALSSGPLRPGYLSPKEEA LCLCLKEA  LEK K+RIMETQEHEPTNKQLAI
Sbjct: 121 VKAEENWIALSSGPLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAI 180

Query: 181 AMGTKLGCIDKILCRAKESRDRLIRCYSKLVISIASPYQGKGLSLQDLTQEGNIGLLKGA 240
           AMGTK GCID+ILCRA+ESRDRLIRCYSKLVISIA+PYQGKGLSLQDLTQEGNIGLLKGA
Sbjct: 181 AMGTKPGCIDRILCRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRMPGHMGQMVARIAEANNHLGIKLSR 300
           ERFEP+RGHKLSTYAYWWIRQAIIRALDKKSRLVR+PGHMGQMVARIAE NNHLGIKLSR
Sbjct: 241 ERFEPSRGHKLSTYAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSR 300

Query: 301 PPTNKEIAESLNVRVSTVRLVTERSRRPISLSQPITDRGCLTLQEIMPGPDNLTPENMVI 360
           PPTN+E+AESL VRVSTVRLV ERS+RPIS++QP+ DR CLTLQEI+PGPDNLTPENMV+
Sbjct: 301 PPTNEEVAESLKVRVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVM 360

Query: 361 EKLMKQELKKLLDTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETVRQINIATLS 420
            KLMKQELK+LL+TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRET+R+INIATLS
Sbjct: 361 RKLMKQELKRLLNTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLKKT++LDY+KDYLV
Sbjct: 421 KLKKTNVLDYIKDYLV 436

[Close]

BLAST of Lag0031134 vs. ExPASy TrEMBL
Match: A0A6J1DII5 (RNA polymerase sigma factor sigD, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111020353 PE=3 SV=1)

HSP 1 Score: 727.2 bits (1876), Expect = 3.9e-206
Identity = 374/436 (85.78%), Postives = 400/436 (91.74%), Query Frame = 0


Query: 1   MATTGSLCSLPPQSPTLPSISLSSLPLLKTHLPQQSHFPFSPFSTKSGSNFISNDTLALP 60
           MAT  SLCSLP QSPTLPSISLSSLP LKTHLP QSHF F PFSTK GSNF  N+T+A+ 
Sbjct: 1   MATASSLCSLPTQSPTLPSISLSSLPSLKTHLPPQSHFLFPPFSTKLGSNFDWNETIAVL 60

Query: 61  SPSETAVLAVEAAREHVLVEGRGVSEAWSFKTLERMEDSYGDDGVVAWKKKRRKRRKEMG 120
            P ETAVLAVEAAREHVL E   VSE WS   LER+E+S GDDG V WKKKRRKRRKE+G
Sbjct: 61  PPQETAVLAVEAAREHVLPEPTWVSETWSCGKLERVEESCGDDGFVGWKKKRRKRRKEVG 120

Query: 121 EKAEEDWVALSSGPLRPGYLSPKEEAVLCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAI 180
           EKAEE  VALSSGPLRPGYL+PKEEA LCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAI
Sbjct: 121 EKAEEGGVALSSGPLRPGYLTPKEEAELCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAI 180

Query: 181 AMGTKLGCIDKILCRAKESRDRLIRCYSKLVISIASPYQGKGLSLQDLTQEGNIGLLKGA 240
           A GT L CID+ILCRAKESRDRLI+CYSKLV+SIA+PYQGKGLSLQDLTQEGNIGLL GA
Sbjct: 181 ATGTNLRCIDRILCRAKESRDRLIQCYSKLVVSIAAPYQGKGLSLQDLTQEGNIGLLIGA 240

Query: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRMPGHMGQMVARIAEANNHLGIKLSR 300
           ERFEPNRGHKLSTYAYWWIRQAIIRALD KSRLVR+PGHMGQMVARIAEANNHLGIKLSR
Sbjct: 241 ERFEPNRGHKLSTYAYWWIRQAIIRALDNKSRLVRLPGHMGQMVARIAEANNHLGIKLSR 300

Query: 301 PPTNKEIAESLNVRVSTVRLVTERSRRPISLSQPITDRGCLTLQEIMPGPDNLTPENMVI 360
            PT+KEIAESLNVRVSTV+LVTERS+RPISL+QP+TDRGCLTLQEIMPGPDNLTPENMV+
Sbjct: 301 LPTHKEIAESLNVRVSTVKLVTERSKRPISLNQPVTDRGCLTLQEIMPGPDNLTPENMVM 360

Query: 361 EKLMKQELKKLLDTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETVRQINIATLS 420
            KLMKQEL++LL+TLSKREAHI+ LYFGLNGEIPQSFEEIGKS+NLSRETVR++NIA LS
Sbjct: 361 RKLMKQELRRLLNTLSKREAHIMRLYFGLNGEIPQSFEEIGKSMNLSRETVRRVNIAALS 420

Query: 421 KLKKTDILDYLKDYLV 437
           KLKKTDILDYLKDY+V
Sbjct: 421 KLKKTDILDYLKDYVV 436

[Close]

BLAST of Lag0031134 vs. ExPASy TrEMBL
Match: A0A1S3CFL7 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103500331 PE=3 SV=1)

HSP 1 Score: 719.9 bits (1857), Expect = 6.3e-204
Identity = 364/423 (86.05%), Postives = 391/423 (92.43%), Query Frame = 0


Query: 14  SPTLPSISLSSLPLLKTHLPQQSHFPFSPFSTKSGSNFISNDTLALPSPSETAVLAVEAA 73
           SPTLPSISLSSLP LKTHLPQQ HFPF PFS+K G NFIS DTL LP P E AVLAVEAA
Sbjct: 51  SPTLPSISLSSLPSLKTHLPQQPHFPFPPFSSKLGPNFISYDTLTLPPPPEAAVLAVEAA 110

Query: 74  REHVLVEGRGVSEAWSFKTLERMEDSYGDDGVVAWKKKRRKRRKEMGEKAEEDWVALSSG 133
            EHVLVE RG SE WS K +ERME+S   DG VAWKKKRRKRRKE+G KAEE+W+ALSSG
Sbjct: 111 GEHVLVEARGFSEDWSSKNVERMEESCVGDGTVAWKKKRRKRRKEVGVKAEENWIALSSG 170

Query: 134 PLRPGYLSPKEEAVLCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIAMGTKLGCIDKIL 193
           PLRPGYLSPKEEA LCLCLKEA  LEK K+RIMETQEHEPTNKQLAIAMGTK GCID+IL
Sbjct: 171 PLRPGYLSPKEEAELCLCLKEAVLLEKVKSRIMETQEHEPTNKQLAIAMGTKPGCIDRIL 230

Query: 194 CRAKESRDRLIRCYSKLVISIASPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLST 253
           CRA+ESRDRLIRCYSKLVISIA+PYQGKGLSLQDLTQEGNIGLLKGAERFEP+RGHKLST
Sbjct: 231 CRARESRDRLIRCYSKLVISIAAPYQGKGLSLQDLTQEGNIGLLKGAERFEPSRGHKLST 290

Query: 254 YAYWWIRQAIIRALDKKSRLVRMPGHMGQMVARIAEANNHLGIKLSRPPTNKEIAESLNV 313
           YAYWWIRQAIIRALDKKSRLVR+PGHMGQMVARIAE NNHLGIKLSRPPTN+E+AESL V
Sbjct: 291 YAYWWIRQAIIRALDKKSRLVRLPGHMGQMVARIAEENNHLGIKLSRPPTNEEVAESLKV 350

Query: 314 RVSTVRLVTERSRRPISLSQPITDRGCLTLQEIMPGPDNLTPENMVIEKLMKQELKKLLD 373
           RVSTVRLV ERS+RPIS++QP+ DR CLTLQEI+PGPDNLTPENMV+ KLMKQELK+LL+
Sbjct: 351 RVSTVRLVMERSKRPISINQPVNDRSCLTLQEIIPGPDNLTPENMVMRKLMKQELKRLLN 410

Query: 374 TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETVRQINIATLSKLKKTDILDYLKD 433
           TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRET+R+INIATLSKLKKT++LDY+KD
Sbjct: 411 TLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETIRRINIATLSKLKKTNVLDYIKD 470

Query: 434 YLV 437
           YLV
Sbjct: 471 YLV 473

[Close]

BLAST of Lag0031134 vs. ExPASy TrEMBL
Match: A0A6J1J3P0 (RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481519 PE=3 SV=1)

HSP 1 Score: 711.8 bits (1836), Expect = 1.7e-201
Identity = 366/437 (83.75%), Postives = 397/437 (90.85%), Query Frame = 0


Query: 1   MATTGSLCSLPPQSPTLPSISLSSLPLLKTHLPQQSHFPFSPFSTKSGSNFISNDTLALP 60
           MATT SLCSLP QSPTLPSISLSSLP LKTHLPQQ HF  SPFSTK   NFISNDTL  P
Sbjct: 1   MATTSSLCSLPAQSPTLPSISLSSLPSLKTHLPQQPHFTISPFSTKLAPNFISNDTLTHP 60

Query: 61  SPSE-TAVLAVEAAREHVLVEGRGVSEAWSFKTLERMEDSYGDDGVVAWKKKRRKRRKEM 120
            PSE  AVLAVEAAREHVLVE   +S+ W  K LE+ME S G DG VAWKK+RRKRRKE+
Sbjct: 61  PPSEAAAVLAVEAAREHVLVEAGWLSKDWRCKNLEKMEQSCGGDGNVAWKKRRRKRRKEV 120

Query: 121 GEKAEEDWVALSSGPLRPGYLSPKEEAVLCLCLKEAAQLEKAKTRIMETQEHEPTNKQLA 180
           GE AEE+WVALSSGPLRPG+LS KEEA LCLCLKEAAQ+EK KTRIMETQ+HEPTNKQLA
Sbjct: 121 GETAEENWVALSSGPLRPGHLSSKEEAELCLCLKEAAQIEKTKTRIMETQDHEPTNKQLA 180

Query: 181 IAMGTKLGCIDKILCRAKESRDRLIRCYSKLVISIASPYQGKGLSLQDLTQEGNIGLLKG 240
           IAMGTKLG ID++L RA+ESRDRLIRCYSKLVISIA+PYQGKG+SLQDLTQEGNIGLLKG
Sbjct: 181 IAMGTKLGYIDRVLWRARESRDRLIRCYSKLVISIAAPYQGKGISLQDLTQEGNIGLLKG 240

Query: 241 AERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRMPGHMGQMVARIAEANNHLGIKLS 300
           AERFEPNRGHKLSTYAYWWIRQ II+ALDKKSRLVR+PGHMGQMVARIAEANNHLGIKLS
Sbjct: 241 AERFEPNRGHKLSTYAYWWIRQTIIQALDKKSRLVRLPGHMGQMVARIAEANNHLGIKLS 300

Query: 301 RPPTNKEIAESLNVRVSTVRLVTERSRRPISLSQPITDRGCLTLQEIMPGPDNLTPENMV 360
           R PT+KE+A+ L V VSTVRLVTERS+RPIS+++P+ DRGCLTLQEIMPGPDNLTPENMV
Sbjct: 301 RVPTHKEVAKYLKVPVSTVRLVTERSKRPISINRPVNDRGCLTLQEIMPGPDNLTPENMV 360

Query: 361 IEKLMKQELKKLLDTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRETVRQINIATL 420
           I KLMKQELK+LL TLSKREAHIL+LYFGLNG+IPQSFEEIGKSLNLSRET+RQ NIATL
Sbjct: 361 IRKLMKQELKRLLSTLSKREAHILTLYFGLNGQIPQSFEEIGKSLNLSRETIRQTNIATL 420

Query: 421 SKLKKTDILDYLKDYLV 437
           +KLKK++ILDYLKDYLV
Sbjct: 421 AKLKKSNILDYLKDYLV 437

[Close]

BLAST of Lag0031134 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 325.5 bits (833), Expect = 6.6e-89
Identity = 203/444 (45.72%), Postives = 278/444 (62.61%), Query Frame = 0


Query: 4   TGSLCSLPPQSPTLPSISLSSLPLLK-THLPQQSHFPFSPFSTKSGSNFISNDTLALPSP 63
           T ++C  PP    +P+IS    PLL+ TH  Q S    SPFS K  +  +  DT      
Sbjct: 10  TATMCPSPP----VPTIS----PLLRTTHQCQPSPSLSSPFSIKLSTALVCGDT------ 69

Query: 64  SETAVLAVEAAREHVLVEGRGVSEAWSFKTLERMEDSYGDDGVVAWKKKRRKRR------ 123
             T    V+++   V+++     E W  ++ +R             +K+RR+RR      
Sbjct: 70  --TVDRVVDSS---VMIK----PEKWGIQSEKR-------------RKRRRRRRVGYERL 129

Query: 124 -----KEMGEKAEEDWVALS-SGPLRPGYLSPKEEAVLCLCLKEAAQLEKAKTRIMETQE 183
                +  G +AE + +++   G  R G+LS  EE  LCL LKE A+LE   T +   +E
Sbjct: 130 EPEEEENAGVEAEAETISVPVVGASRSGFLSRLEEVQLCLYLKEGAKLENLGTSV---EE 189

Query: 184 HEPTNKQLAIAMGTKLGCIDKILCRAKESRDRLIRCYSKLVISIASPYQGKGLSLQDLTQ 243
           +E  +  LA   G K    ++ILCR KE+R+++ RCY +LV+SIA+ YQGKGL+LQDL Q
Sbjct: 190 NEMVSVLLASGRGKKKRSANEILCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQ 249

Query: 244 EGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRMPGHMGQMVARIAEA 303
           EG+IGLL+GAERF+P+RG+KLSTY YWWI+QAI+RA+  KSRLV++PG M ++ A++AEA
Sbjct: 250 EGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAIAHKSRLVKLPGSMWELTAKVAEA 309

Query: 304 NNHLGIKLSRPPTNKEIAESLNVRVSTVRLVTERSRRPISLSQPITDRGCLTLQEIMPGP 363
           +N L  KL R P+ +EIAE LN+ VS VRL  ERSR P+SL +  +  G +TLQEI+ GP
Sbjct: 310 SNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRSPVSLDRVASQNGRMTLQEIVRGP 369

Query: 364 DNLTPENMVIEKLMKQELKKLLDTLSKREAHILSLYFGLNGEIPQSFEEIGKSLNLSRET 423
           D   PE MV  + MK E+++LL +L+ RE+ +L LYFGLNGE P SFEEIGKSL LSRE 
Sbjct: 370 DETRPEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRER 414

Query: 424 VRQINIATLSKLKKTDILDYLKDY 435
           VRQIN   L KL+    ++ LK Y
Sbjct: 430 VRQINGIALKKLRNVHNVNDLKIY 414

[Close]

BLAST of Lag0031134 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 195.3 bits (495), Expect = 1.0e-49
Identity = 107/297 (36.03%), Postives = 177/297 (59.60%), Query Frame = 0


Query: 140 LSPKEEAVLCLCLKEAAQLEKAKTRIMETQEHEPTNKQLAIAMGTKLGCIDKILCRAKES 199
           L+ +EE  L   +++  +LE+ +T + E    +PT  Q A A G     + + +      
Sbjct: 273 LTVREEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLC 332

Query: 200 RDRLIRCYSKLVISIASPYQGKGLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWI 259
           +D++I+   +LVISIA  YQG G++LQDL QEG  GL++GAE+F+  +G K STYA+WWI
Sbjct: 333 KDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWI 392

Query: 260 RQAIIRALDKKSRLVRMPGHMGQMVARIAEANNHLGIKLSRPPTNKEIAESLNVRVSTVR 319
           +QA+ ++L  +SR++R+P HM +   R+ EA   L  +  + P N+EIAE+  + +  + 
Sbjct: 393 KQAVRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLM 452

Query: 320 LVTERSRRPISLSQPITDRGCLTLQEIMPGPDNLTPENMVIEKLMKQELKKLLDTLSKRE 379
            V    + P SL Q I     L   E++  P+ +T E+++I++ M+Q+L K+LD+L  RE
Sbjct: 453 AVLLSPKPPRSLDQKIGMNQNLKPSEVIADPEAVTSEDILIKEFMRQDLDKVLDSLGTRE 512

Query: 380 AHILSLYFGLNGEIPQSFEEIGKSLNLSRETVRQINIATLSKLKKTDILDYLKDYLV 437
             ++   FG+     ++ +EIG+ + +SRE VRQI  +   KLK     ++L+ YLV
Sbjct: 513 KQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQYLV 569

[Close]

BLAST of Lag0031134 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 190.7 bits (483), Expect = 2.5e-48
Identity = 112/323 (34.67%), Postives = 182/323 (56.35%), Query Frame = 0


Query: 102 DDGVVAWKKKRRKRRKEMGEKAEEDWVALSSGPLRPGYLSPKEEAVLCLCLKEAAQLEKA 161
           D+G V  K   +K+ K+ G   ++       GP     L+ KEEA L   ++   +LEK 
Sbjct: 211 DEGYVPQKTSAKKKYKQ-GADNDDALQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKV 270

Query: 162 KTRIMETQEHEPTNKQLAIAMGTKLGCIDKILCRAKESRDRLIRCYSKLVISIASPYQGK 221
           KT++      EPT  + A AMG     +   + R + SR++LI    +LV+ IA  YQ +
Sbjct: 271 KTKLESQNGCEPTIGEWAEAMGISSPVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNR 330

Query: 222 GLSLQDLTQEGNIGLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRMPGHMG 281
           GL+ QDL QEG++GL+K  E+F+P  G + +TYAYWWIRQ+I +++ + SR +R+P ++ 
Sbjct: 331 GLNFQDLLQEGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVY 390

Query: 282 QMVARIAEANNHLGIKLSRPPTNKEIAESLNVRVSTVRLVTERSRRPISLSQPITDRGCL 341
            ++ +++EA      + +  P+ +E+A  + V    +  +   +R P+S+ QPI      
Sbjct: 391 MLLGKVSEARKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDT 450

Query: 342 TLQEIMPGPDNLTPENMVIEKLMKQELKKLLDTLSKREAHILSLYFGLNGEIPQSFEEIG 401
           T QEI P     TP   V ++LM+  ++ LL+ LS +E  I+ L FG++G   +S  EIG
Sbjct: 451 TFQEITPDSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIG 510

Query: 402 KSLNLSRETVRQINIATLSKLKK 425
           +   LS+E VRQ+    L +LK+
Sbjct: 511 EIYGLSKERVRQLESRALYRLKQ 532

[Close]

BLAST of Lag0031134 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 150.6 bits (379), Expect = 2.9e-36
Identity = 118/380 (31.05%), Postives = 186/380 (48.95%), Query Frame = 0


Query: 77  VLVEGRGVSEAWSFKTLERMEDSYGDDGVVAWKK---------KRRKRRKEMGEKAEEDW 136
           +L++   + ++W+    + +   Y   G +  KK           R+RR    +K     
Sbjct: 115 LLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTH 174

Query: 137 VA----LSSGPLRPGY---------LSPKEEAVLCLCLKEAAQLEKAKTRIMETQEHEPT 196
           V     +SSG    GY         LS  E   L   +K   +L+  K+R+ +    EP+
Sbjct: 175 VKAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPS 234

Query: 197 NKQLAIAMGTKLGCIDKILCRAKESRDRLIRCYSKLVISIASPYQGKGLSLQDLTQEGNI 256
           ++QLA+++      +   L     +R++L     +LV+SIA  Y   G  + DL Q G I
Sbjct: 235 DEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLI 294

Query: 257 GLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRMPGHMGQMVARIAEANNHL 316
           GLL+G E+F+ ++G ++STY YWWIRQ + RAL   SR +R+P H+ + +  I  A   L
Sbjct: 295 GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL 354

Query: 317 GIKLSRPPTNKEIAESLNVRVSTVRLVTERSRRPISLSQPITDRGCLTLQEIMPGPDNLT 376
             K   P  ++ IAESLN+    VR  TE   +  SL     DR        +PG  + +
Sbjct: 355 QEKGITPSIDR-IAESLNMSQKKVRNATEAVSKVFSL-----DRDAFPSLNGLPGETHHS 414

Query: 377 ----------PENMVIEKLMKQELKKLLD-TLSKREAHILSLYFGLNGEIPQSFEEIGKS 424
                     P +   +  +K+E+ KL+  TL +RE  I+ LY+GL+ E   ++E+I K 
Sbjct: 415 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKR 474

[Close]

BLAST of Lag0031134 vs. TAIR 10
Match: AT1G64860.2 (sigma factor A )

HSP 1 Score: 130.6 bits (327), Expect = 3.1e-30
Identity = 107/361 (29.64%), Postives = 173/361 (47.92%), Query Frame = 0


Query: 77  VLVEGRGVSEAWSFKTLERMEDSYGDDGVVAWKK---------KRRKRRKEMGEKAEEDW 136
           +L++   + ++W+    + +   Y   G +  KK           R+RR    +K     
Sbjct: 115 LLLQKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTH 174

Query: 137 VA----LSSGPLRPGY---------LSPKEEAVLCLCLKEAAQLEKAKTRIMETQEHEPT 196
           V     +SSG    GY         LS  E   L   +K   +L+  K+R+ +    EP+
Sbjct: 175 VKAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPS 234

Query: 197 NKQLAIAMGTKLGCIDKILCRAKESRDRLIRCYSKLVISIASPYQGKGLSLQDLTQEGNI 256
           ++QLA+++      +   L     +R++L     +LV+SIA  Y   G  + DL Q G I
Sbjct: 235 DEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLI 294

Query: 257 GLLKGAERFEPNRGHKLSTYAYWWIRQAIIRALDKKSRLVRMPGHMGQMVARIAEANNHL 316
           GLL+G E+F+ ++G ++STY YWWIRQ + RAL   SR +R+P H+ + +  I  A   L
Sbjct: 295 GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRL 354

Query: 317 GIKLSRPPTNKEIAESLNVRVSTVRLVTERSRRPISLSQPITDRGCLTLQEIMPGPDNLT 376
             K   P  ++ IAESLN+    VR  TE   +  SL     DR        +PG  + +
Sbjct: 355 QEKGITPSIDR-IAESLNMSQKKVRNATEAVSKVFSL-----DRDAFPSLNGLPGETHHS 414

Query: 377 ----------PENMVIEKLMKQELKKLLD-TLSKREAHILSLYFGLNGEIPQSFEEIGKS 405
                     P +   +  +K+E+ KL+  TL +RE  I+ LY+GL+ E   ++E+I K 
Sbjct: 415 YIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKEC-LTWEDISKR 468

The following BLAST results are available for this feature:

BLAST of Lag0031134 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906215.1	3.6e-214	87.39	RNA polymerase sigma factor sigD, chloroplastic [Benincasa hispida]	[more]
XP_004149725.1	9.3e-210	86.01	RNA polymerase sigma factor sigD, chloroplastic [Cucumis sativus] >KGN58573.1 hy...	[more]
KAA0048391.1	1.6e-209	86.01	RNA polymerase sigma factor sigD [Cucumis melo var. makuwa] >TYJ99868.1 RNA poly...	[more]
XP_022152696.1	8.1e-206	85.78	RNA polymerase sigma factor sigD, chloroplastic [Momordica charantia]	[more]
XP_008461821.1	1.3e-203	86.05	PREDICTED: RNA polymerase sigma factor sigD, chloroplastic [Cucumis melo]	[more]

BLAST of Lag0031134 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZSL6	9.3e-88	45.72	RNA polymerase sigma factor sigD, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
P26683	4.5e-50	34.01	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	5.9e-50	34.41	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
O22056	1.5e-48	36.03	RNA polymerase sigma factor sigB OS=Arabidopsis thaliana OX=3702 GN=SIGB PE=2 SV...	[more]
Q9LD95	3.6e-47	34.67	RNA polymerase sigma factor sigF, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lag0031134 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9T0	4.5e-210	86.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G687740 PE=3 SV=1	[more]
A0A5D3BP27	7.6e-210	86.01	RNA polymerase sigma factor sigD OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1DII5	3.9e-206	85.78	RNA polymerase sigma factor sigD, chloroplastic OS=Momordica charantia OX=3673 G...	[more]
A0A1S3CFL7	6.3e-204	86.05	RNA polymerase sigma factor sigD, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1J3P0	1.7e-201	83.75	RNA polymerase sigma factor sigD, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Lag0031134 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13730.1	6.6e-89	45.72	sigma factor 4	[more]
AT1G08540.1	1.0e-49	36.03	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	2.5e-48	34.67	RNApolymerase sigma-subunit F	[more]
AT1G64860.1	2.9e-36	31.05	sigma factor A	[more]
AT1G64860.2	3.1e-30	29.64	sigma factor A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 396..411 score: 39.35 coord: 227..240 score: 58.71 coord: 411..422 score: 48.33 coord: 251..259 score: 74.91 coord: 375..387 score: 37.52
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 94..275 e-value: 8.6E-36 score: 126.1
None	No IPR available	PANTHER	PTHR30603:SF47	RNA POLYMERASE SIGMA FACTOR SIGD, CHLOROPLASTIC	coord: 4..435
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 4..435
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 365..423 e-value: 4.37786E-8 score: 47.4842
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 276..351 e-value: 4.7E-10 score: 41.7
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 354..431 e-value: 3.3E-20 score: 73.7
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 203..272 e-value: 1.3E-20 score: 73.0
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 199..424 e-value: 3.5E-31 score: 106.0
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 371..424 e-value: 4.5E-13 score: 48.5
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 286..358 e-value: 3.4E-13 score: 49.5
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 335..425
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 276..347
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 137..272

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031134.1	Lag0031134.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity