Lag0031129 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031129
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Polyubiquitin-like protein
Location	chr11: 5099299 .. 5100622 (-)
RNA-Seq Expression	Lag0031129
Synteny	Lag0031129

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATTACCAATTCATCTCAGAAGGTTCGCGAATCGATCTCTTGTTCAATCGAATAATCGCATCGCCGAACAAGATTCCGATCATCGTGAAACTCTCTGGCCGACAGATAGACATGGAGATCGATGAAACAGAGACAGTTCACAGTTTGAAGCAGAAAATCCAGATAATCGACGGTACACCAATTAAAAAATGGTCGTTGTAATTTAAAACGATTACTGGAATTTGTGCGAACTTGGAATCGGTGAATAAAAAATGAACCCCAAATGCAAAAAATTAGAAGAAGAGAAGAAACAAAAGTAAAGAAAATCAACCCATTAAACTCATAGAGACATGCAAATTGCAAACCCAAATCAAATCAAAGAGAAAAAAAAAAAAGAACCCCAAATGCAAAAAACTAGAAGAAGAAGAAAAAAAAAAGTAAAGAAAATCACAACCCACTAAACTCACAGGCTTAAGAAGGAACAAAATCCATCTAATTGCAAACCCATTAAACCTGCCATTCGTTTCGTGGTGGAGAAGACGGCGGTGGAAGGAGTCGACGACGACGCCATTGGTTGCGTGGTGGAGGAGACAACGGTGGAAGGTAAAGAATTAATTCTCCTTGGCCCGCGATGGTGTCGTTTCGTGCTTGAGAGAGAGAGGGAGAAAGGAAAAGTTGAGAGAGAGAAGGGGGAAGGAAAAAGGCGGAGGCAAGTTACTGAAAGTGAGACAAACCCTAAAATTGCAATTTAAGTAAAAACCAAGAACCGAATCGAACCGGTCGATTCAGACTGGATAGATTTAAAAATCGATCAGAACCGAACCGAACCGCACCAGTTCGGTTCGGTTCGGTTTGGGTTTTTTCACCCCTAATTGGAAGCAAGCCATGAAAGCCGAACTTGAAGCCATGAAAAATAATAACACATGGAGTATTGTTCCTTTACCACCAAATAAACACAACATTGGATGCAAATGGATTTATAAGATTAAATATCGTGCTGATGGAACTATTGAACGATACAAAGCTCGTTTAGTGGCAAAAAGGTATACTCAACAAGAGAGACTTGATTTTCTAGAGACCTTTTCTCCTGTTGCTAAACTCGTAACTGTTCGAGTATTATTTACTAGAGATGTTCATTTACCCCGCGGGACAGGGCCCTGCGGGGACCCGCCCCGAATGGGGTGGGGAATCCCCGATTACGCTGGGAATGGGGGAGGGAGTGGGGACAAAATTTTCCCCATTCCATAAACGGGGCCGGGGACGGGGAATATGGTGGGGAATCCCCGATTACACGGGGAATGGGGGAGGGAGTGGGGACAAAATTTTCCCCATTCCATAA

mRNA sequence

ATGGAGGATTACCAATTCATCTCAGAAGGTTCGCGAATCGATCTCTTGTTCAATCGAATAATCGCATCGCCGAACAAGATTCCGATCATCGTGAAACTCTCTGGCCGACAGATAGACATGGAGATCGATGAAACAGAGACAGTTCACAGTTTGAAGCAGAAAATCCAGATAATCGACGGTACACCAATTAAAAAATGGTCGTTGCTTAAGAAGGAACAAAATCCATCTAATTGCAAACCCATTAAACCTGCCATTCGTTTCGTGGTGGAGAAGACGGCGGTGGAAGGAGTCGACGACGACGCCATTGGTTGCGTGGTGGAGGAGACAACGGTGGAAGAGATGTTCATTTACCCCGCGGGACAGGGCCCTGCGGGGACCCGCCCCGAATGGGGTGGGGAATCCCCGATTACGCTGGGAATGGGGGAGGGAGTGGGGACAAAATTTTCCCCATTCCATAAACGGGGCCGGGGACGGGGAATATGGTGGGGAATCCCCGATTACACGGGGAATGGGGGAGGGAGTGGGGACAAAATTTTCCCCATTCCATAA

Coding sequence (CDS)

ATGGAGGATTACCAATTCATCTCAGAAGGTTCGCGAATCGATCTCTTGTTCAATCGAATAATCGCATCGCCGAACAAGATTCCGATCATCGTGAAACTCTCTGGCCGACAGATAGACATGGAGATCGATGAAACAGAGACAGTTCACAGTTTGAAGCAGAAAATCCAGATAATCGACGGTACACCAATTAAAAAATGGTCGTTGCTTAAGAAGGAACAAAATCCATCTAATTGCAAACCCATTAAACCTGCCATTCGTTTCGTGGTGGAGAAGACGGCGGTGGAAGGAGTCGACGACGACGCCATTGGTTGCGTGGTGGAGGAGACAACGGTGGAAGAGATGTTCATTTACCCCGCGGGACAGGGCCCTGCGGGGACCCGCCCCGAATGGGGTGGGGAATCCCCGATTACGCTGGGAATGGGGGAGGGAGTGGGGACAAAATTTTCCCCATTCCATAAACGGGGCCGGGGACGGGGAATATGGTGGGGAATCCCCGATTACACGGGGAATGGGGGAGGGAGTGGGGACAAAATTTTCCCCATTCCATAA

Protein sequence

MEDYQFISEGSRIDLLFNRIIASPNKIPIIVKLSGRQIDMEIDETETVHSLKQKIQIIDGTPIKKWSLLKKEQNPSNCKPIKPAIRFVVEKTAVEGVDDDAIGCVVEETTVEEMFIYPAGQGPAGTRPEWGGESPITLGMGEGVGTKFSPFHKRGRGRGIWWGIPDYTGNGGGSGDKIFPIP

Homology

[Close]

BLAST of Lag0031129 vs. NCBI nr
Match: XP_022952137.1 (uncharacterized protein LOC111454902 [Cucurbita moschata])

HSP 1 Score: 99.8 bits (247), Expect = 2.6e-17
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MEDYQFISEGSRIDLLFNRIIASPNKIPIIVKLSGRQIDMEIDETETVHSLKQKIQIIDG 60
           MEDYQFISEGSRIDL  ++IIA PN  PI V+ SGRQI+++ID+TETVHSLKQKIQII G
Sbjct: 55  MEDYQFISEGSRIDLSIDQIIAPPNNFPISVEFSGRQINIDIDKTETVHSLKQKIQIIYG 114

Query: 61  TPIKKWSL 69
           TPI+  SL
Sbjct: 115 TPIQSMSL 122

[Close]

BLAST of Lag0031129 vs. NCBI nr
Match: XP_022968884.1 (uncharacterized protein LOC111468065 [Cucurbita maxima])

HSP 1 Score: 98.6 bits (244), Expect = 5.9e-17
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 1   MEDYQFISEGSRIDLLFNRIIASPNKIPIIVKLSGRQIDMEIDETETVHSLKQKIQIIDG 60
           MEDYQFISEGSRIDL  ++IIA PN  PI V+ SGRQI+++ID+TETVHSLKQKIQII G
Sbjct: 55  MEDYQFISEGSRIDLSIDQIIAPPNNFPISVEFSGRQINIDIDKTETVHSLKQKIQIIYG 114

Query: 61  TPIKKWSL 69
           TPI+  SL
Sbjct: 115 TPIQAISL 122

[Close]

BLAST of Lag0031129 vs. NCBI nr
Match: XP_023554594.1 (uncharacterized protein LOC111811794 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-16
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1   MEDYQFISEGSRIDLLFNRIIASPNKIPIIVKLSGRQIDMEIDETETVHSLKQKIQIIDG 60
           MEDYQFISEGSRIDL  +++ A PN  PI V+ SGRQI+++ID+TETVHSLKQKIQII G
Sbjct: 55  MEDYQFISEGSRIDLSIDQVTAPPNNFPISVEFSGRQINIDIDKTETVHSLKQKIQIIYG 114

Query: 61  TPIKKWSL 69
           TPI+  SL
Sbjct: 115 TPIQSMSL 122

[Close]

BLAST of Lag0031129 vs. NCBI nr
Match: KAG6572305.1 (hypothetical protein SDJN03_29033, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 5.0e-16
Identity = 49/68 (72.06%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1   MEDYQFISEGSRIDLLFNRIIASPNKIPIIVKLSGRQIDMEIDETETVHSLKQKIQIIDG 60
           MEDYQFISEGSRIDL  ++IIA PN  PI V+ SGRQI+++ID+TETV SLKQKIQII G
Sbjct: 55  MEDYQFISEGSRIDLSIDQIIAPPNNFPISVEFSGRQINIDIDKTETVLSLKQKIQIIYG 114

Query: 61  TPIKKWSL 69
           TPI+  SL
Sbjct: 115 TPIQSMSL 122

[Close]

BLAST of Lag0031129 vs. NCBI nr
Match: KAG7011917.1 (ubi, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-15
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1   MEDYQFISEGSRIDLLFNRIIASPNKIPIIVKLSGRQIDMEIDETETVHSLKQKIQIIDG 60
           MEDYQFISEGSRIDL  ++IIA P   PI V+ SGRQI+++ID+TETV SLKQKIQII G
Sbjct: 55  MEDYQFISEGSRIDLSIDQIIAPPKNFPISVEFSGRQINIDIDKTETVLSLKQKIQIIYG 114

Query: 61  TPIKKWSL 69
           TPI+  SL
Sbjct: 115 TPIQSMSL 122

The following BLAST results are available for this feature:

BLAST of Lag0031129 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952137.1	2.6e-17	73.53	uncharacterized protein LOC111454902 [Cucurbita moschata]	[more]
XP_022968884.1	5.9e-17	73.53	uncharacterized protein LOC111468065 [Cucurbita maxima]	[more]
XP_023554594.1	1.3e-16	70.59	uncharacterized protein LOC111811794 [Cucurbita pepo subsp. pepo]	[more]
KAG6572305.1	5.0e-16	72.06	hypothetical protein SDJN03_29033, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011917.1	2.5e-15	70.59	ubi, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Lag0031129 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 29..67 e-value: 1.3E-5 score: 24.8
None	No IPR available	GENE3D	3.10.20.90		coord: 26..77 e-value: 1.9E-7 score: 32.9
None	No IPR available	PANTHER	PTHR10621:SF39	UBIQUITIN-LIKE SUPERFAMILY PROTEIN	coord: 1..69
None	No IPR available	PANTHER	PTHR10621	UV EXCISION REPAIR PROTEIN RAD23	coord: 1..69
None	No IPR available	CDD	cd17039	Ubl_ubiquitin_like	coord: 29..65 e-value: 2.2113E-4 score: 36.035
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 20..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031129.1	Lag0031129.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005654	nucleoplasm
molecular_function	GO:0031593	polyubiquitin modification-dependent protein binding
molecular_function	GO:0070628	proteasome binding
molecular_function	GO:0043130	ubiquitin binding
molecular_function	GO:0005515	protein binding