Lag0031119 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031119
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	structure-specific endonuclease subunit slx1
Location	chr11: 5000923 .. 5006497 (+)
RNA-Seq Expression	Lag0031119
Synteny	Lag0031119

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACTGCTCTCTCAGACATTTCGTTGCCAAAAACCCCCAATTTCAAATCCAGAAGTTTCGAAACCTTCATCTTCGTCGACCAAGGATCCATCGCCTGCGACATTGATCGTCAAATCAAAGCCGAAGCAGAAGCCGAAGCAATGGTGTGCATATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTTGGGGTCACCCTCGACTTCGATCGACGGTATGTCCAGTTTCTTCTATTGGGTTTCTCCTTTGAAGAACAGATTTCATGAATTGATGTTGAAATTTTATCTGGGTCGTGTTCGATTAGCCTTCCAAAGTGATTTTGCGAGCTTTTAGCTTATCAATTTGACTTGATATAGTTAAATCATCTGATGAGTTACGATAAATTTAAAATTTTATCACTCTTTCTCACTTATGAAAGTTGAACGAGTGGTTTTTAATATTAATTGGGTAGGAAATGACGTTATAAGGTTCCAACATTGAATGTCCAGCTACTGTGATGCTACATTAAACTAGTAATGAATTCAAAATCTTAAGCCTAAACTGATGGGTTGTGATAAATTTAGTATTTTATCAATATTTTAACTTAAGAAGCACGGATACGGACACAAGACATGGATACAACATAATGAGACGTTATTTTTTTTTAAATCTAGGACATGGACACGACACGGACACGTTTAGTGAAATATACATTTTTAAATATATATATCATTTTTATACAAGAAGGAAATTCAAAATCAGTTTATGCATTTGTATGCTTAAAAAATGAGTATAATGTATTTCCCTCTTAACATTTATTATTTTTTCATTTAATATTGTGTCTATTTAATATATTTAACAAGTGTTCAATATGGACCTATATTGACTTTGTACAACTAGTGTTTGCCACATATCACTTGTGCTAACGGAATATCCAAGTGTCTAACACCAAACAAAAGTGTCCGTGTGTGAGGGACCAAGGTAGTATGGGATGCCTTTTTCCCACATTGGAAAGATATGGGCTCCTAATGGGGTATATAAGTGGTTGGTTCTCCCTCCCCAATCGCTTGACTTTTGGGGTGTGGCTCTCCAACTACTTAGATACCTAACACCGTGCTTCTTATATTTTAACACATATTTGGGTGAAATAGTGCTTTTCTTTTTTTTTTTTTTTGAAGAAACATGCTTGAATTGTGTCGCTTGTTACGGATATACGTATAACATAGTACCAATCAATTTGGTGCAAGAAGATGAGGGTTTTATCTTAGAAAAAGAAAACTTGGGTTTAGTTTTTTATTTATAGTTTCCAAGTTGTATTGCTTGATTAATCAGTTGAGATATTGTGTTTTTTATGAGTTTGTAAGTTGGAGAGTGGTTTGGGATCATCTCAAAACTATTGTGGTATTTTAGAAGTTATGTTTTGAGAGGATAGTGGAGGTGGAAGGAAGAGAAGCTTCACTAAATGTGAATATGCTTCTGACTCAAAAGCAGTGATCATTTCTGCAAAATGAAGTATTGTACCAATCAATTTGGCTTTGGAAGATTTGTTTTTTTGCTATCTTGTGGGGTATTTGGCTCGATAGGAACAATAGAATCTTTAGAGGGGTGGAGAAATCCATGAGTGAGTTGTGGGAGACGATTAGATTTAATACGTCTTTGTGGGCCTCGGTTTCTAAGTTCTTTTGTAATTATCAGCTAGGTCTTATTCTTTTGGATTGGGACCCGTTCCTGTAGTTTGACGGGTGTTTTCGGTTGGGTTTGTTTTTTGTATGCCCTCTTGTATTCTTTCATTTTATTCTCAATGAAAGCGTGGTTTCTTATTAAAAAAAAGTATTGTTCAAGATGTTTGATGGTTCATATTAAGAGATATGCTTCAAATGTTTTTTTTTTCCAGATCCTATCCTCTAGTGAATTCCTTCGCCAAAGAAATTTGCAATTTGCAACTTTTATATGTCTTTTATACATAAGAAGAGGTATTCAAATATTTCTTGATGTCATAAAGGTGTATTCTTGTACAGTTTGAAACAACACAATGGTGAAATAAAAGGTGGTGCGAAAGCTACTCGAGCGGGACGACCCTGGGTCTGTGCATGCACAATTCATGGTTTTAAAGACCAAAGTGAAGGTATCCATTTGAAATATAACTTTTAGAATCATGCAGCAGTTAGAAACTATGTTGCTTTGGCTTCTGGAACCATGTGATATTTTCTATTTTCTTTGTAGTGGCAGTGACCTTGCTATGTTAGATAAGGACGGTTGGATGTATTTCATGTTTTCTGGTATTGTGTTTTTTTAGAAGAGAAACGGACATTTCATTGATAAATGAAATAATGGGAAATAAAATTCCCATAAGAAATCATTACATGAAAGAAGTCCAGTTTGAGATCAAAGAAGATAGATTATAGTCACTAAAAGGGTGCTTTAATTTACACCAATACAACGCATTAAATAAAACTAGATCCATTAAAGCTTTAAAGTGTAAAGAAACGTCCCCGAAAGTTTAAAGTGTAAAGAAGATAGACTATGTTTTCTGGTATTGTGAGAACTATCTCCCCGAGAAACGAAGTTTATTCGTTGTTCTTTCCCAACATTTATTATGAGATTCATCTTTTGATGGGAACTTACACAATACACAGACGTCTAAGTTAGAATTGAGCTCAATTATTACTCTTTAAAACTTTTACATTCTTTCATAAGCTTCAAAACACTATACTGGGAGGAGAGAAACCTCACAGCAGAACTTTGTTAGATATCCAAACTACGAAAACACCGAATAGTATATATTGCAATATCAAAAGAAGTTATAATATAACCGACAGCCTTTCGAGAGGGCTAACTCTCTCCCAAAGTCTCACTATGAGACTACACTCAAAATTCTTCACACCCTTTTAAGACCCCTGACTTACCTATTTATAACCAAAACACAACCAAGACACCCTAGCTAATTACTATTATACCCTTACTCATCTTCTATTACTATTCCCCATATATCCCTGACTAGTACTCTCACAAACTCCTCTTATATCCACATATAAATGCTGATTTTCCTTTTAAATAGTTCACTCAAAGCCAGGGAAGATATCCCTGGTGAGTGGACCAGTAAGTGCTGTAGAAACTGTCCTAGAAGACCCATGAAGGATACGTGCCGAACGTCTGAAAATATTCGGTACTTGTAATTGAAGAATTGATTGAGCCAAAGGGAGGCAAAAGATACTGTGGTGACTGGTGTATACAATGCTTAGGATTTCGTACTCTAAGCAGAGACGAGGGGTAGGAAGAAACCTTAGAGCATAAAACCGGCACACCCTATAATTTTAATTCATCAGTTAAACACTGAGATTTTCCTTTCTTGAAGATACAAATATTCATTCAAGGTTGAAGATGATACCCTGGTGAGTAGACCAGCAAGTGGTGTGAGCCCCTATGTGATAGAACCGAAATAGAACTGCTGTGTATTATTACGATAAACCCAAGTGTTTGAGGTACTTGGACCCTCCCTCTCTTGAGAATGCTCAAGAGTAACTCACTGACTACTCAATTCTCTATCTTCTCCTTTCCCAACTCTCTCTATTTATAACTCCATACTCTAACAACTCCCTAACTAACTACTAATATACCCTTACCAATATTCCTAATTACACGTTACTTACATTCCTATCACTATGCCAGAATAGCCCAAGGATACATTCTAGTTTTTTTGAAATTATCTTGTCCTCACAATTGGAAGAACTAATGAGACTGAAAATAGGCAAACATATATGCGACATTTGAGTACTCAAGTGGCCCCGGGGAGGCGGCTTATAGGGATATTGTGCTTAGTTTACAATGAGCACAATATTGGGTAAAAGTGCAATGTAATGAGCACAATATTGGGTAAAAGTGCAATGTTATAGCTGCAAAAGTAGGGATAATGGTACCAAAAACAATAGTATGCTATTGTGCTAGACCCCTGATAACTAAGCGTTAAGCATAAGAGAGTTGGGGGAAGGGAGACAGGAACGACTTAGCATTTAGCGTGGTGTTAGGCCCCCGATAACACGAACGTACTCAAGGAGGGGTAGAATGGGAAATTCATCTAGGGGAAGTTAGTTGCCGTTAGTGTACGGTTTGTTTTTTGGGCTGTATTTATTCAGTTGGTTGTTCTGCTTTTGTTATGTTATTTTTCTGTGTATTTTCTGGATGTATTAGGAGAGCTCTAGCCCTCTGGAAAGGCTGTGTGAACTTGTATTTTGACCTCCCAGGTTTATTTTGTGATTAATATATATCAATTGTAAGGGAGATACCTTACATTAGGATGGATGCAACTAGTTAGTTAGACAAGCGAGAAGGGTGCAGGTTAGAAGTATTTACGAGTTCGGTTATGATGTAGAGGGTATATTTGAACAAAAATCTCATAGAAAAAATAAGGGCTTAGAGGGAATGGGTTCAATCCATGGTGGCCACCTACCTAGGATTTAATATCCTACGAGTTTCCTTGGCAACTAAATGTTAGGGTCAGGCGGTTGTCGCGTGAGATTAGTCGAGGTGCGCATAAGCTTGTCCGGACACTCACGGATATAAAAATATATATATATATTTGAACAAGAATCTCACAGGTGAATAGGAGAGATCTAGAAACAAGTTCATAATATCTACGAAGTAGCAATGAAGGCAATAATAAATACCGAAGCTATAATTTCTTTTTGGGCAATAATAAATGTAATACACCAACCATGATATTTATGATTTCCATGGCTGATAGCCTGGTACAATTTTATGCATAAGAAGTACTGATGTTTGGATTGACTTGTTGATGCTAAGAAACAAACTCATTCAATATGTCTTACAGCTTGCATTCCATTTTGATAATCATCAGCTCTCAAATTATATGCATATTAAGACTCATACCTTCCAAATGGGGCCTTCCATCTTTAGTGTACTTAGACTTTTCTTCTTTATAAATGGAACAACCTGCAAGTTTTAGATGACTGTATTTAGTATCCCATTCATCAATCACATGTCATTAAATGGCAAGCATTTGAAGGTGTAACTTTTGCTGATGAAGCAAATGAAGCAACTTTTTGTCATCGTTTGAACAACTTCTCGTAAGAGTAATCCGTAGCGATCACTGCGGAACAAAAATCGTCGAGTTTCACTCGTGTCTGATGATTGTATGTTATGTATGGATTGCTGAATTAGTTTGATGAAGGTCTTGTTTCTGGTTGCATTTATAATTTCTGTTGTTGTTGCTGCTATGAACATCCTTCAAGTTCATTTCCTTTAATCTTTTTGCACAAAACCCTTCGAACCACCAGCGTGATAATCAAATTTCTCTCGATTTTTTCGACGGTTAAACGTTCTGTAAAATCATTCCTGCACCATAGCTGATGCTGTTTTTATATACTTTGTAATGCAGCTTGTGAGTTTGAATCAAAATGGAAAGAAGTTTCAAGGAAAATGGCCCATAAGAGGGTGAAGGATGACATGGGAATGCAGGGAGATGATCAGACATCAAGGTTGCTCAAGCACAGGCAAAGAGCTCTAGAAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGCAATTGGATCCTTTCTGA

mRNA sequence

ATGAAACTGCTCTCTCAGACATTTCGTTGCCAAAAACCCCCAATTTCAAATCCAGAAGTTTCGAAACCTTCATCTTCGTCGACCAAGGATCCATCGCCTGCGACATTGATCGTCAAATCAAAGCCGAAGCAGAAGCCGAAGCAATGGTGTGCATATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTTGGGGTCACCCTCGACTTCGATCGACGTTTGAAACAACACAATGGTGAAATAAAAGGTGGTGCGAAAGCTACTCGAGCGGGACGACCCTGGGTCTGTGCATGCACAATTCATGGTTTTAAAGACCAAAGTGAAGCCAGGGAAGATATCCCTGGTGAGTGGACCAGTAAGTGCTGTAGAAACTGTCCTAGAAGACCCATGAAGGATACGTGCCGAACGTCTGAAAATATTCGGAGAGCTCTAGCCCTCTGGAAAGGCTGTGTGAACTTGTATTTTGACCTCCCAGCTTGTGAGTTTGAATCAAAATGGAAAGAAGTTTCAAGGAAAATGGCCCATAAGAGGGTGAAGGATGACATGGGAATGCAGGGAGATGATCAGACATCAAGGTTGCTCAAGCACAGGCAAAGAGCTCTAGAAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGCAATTGGATCCTTTCTGA

Coding sequence (CDS)

ATGAAACTGCTCTCTCAGACATTTCGTTGCCAAAAACCCCCAATTTCAAATCCAGAAGTTTCGAAACCTTCATCTTCGTCGACCAAGGATCCATCGCCTGCGACATTGATCGTCAAATCAAAGCCGAAGCAGAAGCCGAAGCAATGGTGTGCATATCTCATCATCTCCTCCAATTCCCCCATCAAAACCTATGTTGGGGTCACCCTCGACTTCGATCGACGTTTGAAACAACACAATGGTGAAATAAAAGGTGGTGCGAAAGCTACTCGAGCGGGACGACCCTGGGTCTGTGCATGCACAATTCATGGTTTTAAAGACCAAAGTGAAGCCAGGGAAGATATCCCTGGTGAGTGGACCAGTAAGTGCTGTAGAAACTGTCCTAGAAGACCCATGAAGGATACGTGCCGAACGTCTGAAAATATTCGGAGAGCTCTAGCCCTCTGGAAAGGCTGTGTGAACTTGTATTTTGACCTCCCAGCTTGTGAGTTTGAATCAAAATGGAAAGAAGTTTCAAGGAAAATGGCCCATAAGAGGGTGAAGGATGACATGGGAATGCAGGGAGATGATCAGACATCAAGGTTGCTCAAGCACAGGCAAAGAGCTCTAGAAAAAGTGAAGTGTCTGTTTGATTGCAGTCAATTTGAGTTTGATTGGCAATTGGATCCTTTCTGA

Protein sequence

MKLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKQKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEAREDIPGEWTSKCCRNCPRRPMKDTCRTSENIRRALALWKGCVNLYFDLPACEFESKWKEVSRKMAHKRVKDDMGMQGDDQTSRLLKHRQRALEKVKCLFDCSQFEFDWQLDPF

Homology

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BLAST of Lag0031119 vs. NCBI nr
Match: XP_004151512.1 (structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypothetical protein Csa_001754 [Cucumis sativus])

HSP 1 Score: 269.2 bits (687), Expect = 3.1e-68
Identity = 140/223 (62.78%), Postives = 157/223 (70.40%), Query Frame = 0


Query: 1   MKLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKQKPKQWCAYLIISSNSP 60
           M+LLS TFRC KPPISNP +SK SSSS+KDP   TLIVKS+PK K KQWC YLIISSNSP
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDP---TLIVKSEPKPKLKQWCVYLIISSNSP 60

Query: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEAREDIPGEWTS 120
           IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CACTIHGFKDQS+           
Sbjct: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQ----------- 120

Query: 121 KCCRNCPRRPMKDTCRTSENIRRALALWKGCVNLYFDLPACEFESKWKEVSRKMAHKRVK 180
                                                  ACEFESKWK+VSRK+++++ +
Sbjct: 121 ---------------------------------------ACEFESKWKKVSRKISYEKKE 170

Query: 181 DDMGMQGDDQTSRLLKHRQRALEKVKCLFDCSQFEFDWQLDPF 224
           +D+G   DDQT RLLKHR+RAL KVKCLFDCSQFEFDW+LDPF
Sbjct: 181 EDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 170

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BLAST of Lag0031119 vs. NCBI nr
Match: XP_008461838.1 (PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_008461839.1 PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo])

HSP 1 Score: 263.8 bits (673), Expect = 1.3e-66
Identity = 139/223 (62.33%), Postives = 156/223 (69.96%), Query Frame = 0


Query: 1   MKLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKQKPKQWCAYLIISSNSP 60
           M+LLSQTFRCQKPPISNP + K SSSSTK P   TLIVK + + KPKQWC YLIISSNSP
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGP---TLIVKLE-EPKPKQWCVYLIISSNSP 60

Query: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEAREDIPGEWTS 120
           IKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPW+CACTIHGFKDQS+           
Sbjct: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQ----------- 120

Query: 121 KCCRNCPRRPMKDTCRTSENIRRALALWKGCVNLYFDLPACEFESKWKEVSRKMAHKRVK 180
                                                  ACEFESKWK+VSRK+++++ +
Sbjct: 121 ---------------------------------------ACEFESKWKKVSRKISYEKKE 169

Query: 181 DDMGMQGDDQTSRLLKHRQRALEKVKCLFDCSQFEFDWQLDPF 224
           DD+G Q D+QT RLLKHRQRAL KVKCLFDCS FEFDW+LDPF
Sbjct: 181 DDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 169

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BLAST of Lag0031119 vs. NCBI nr
Match: XP_038903984.1 (structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida])

HSP 1 Score: 263.5 bits (672), Expect = 1.7e-66
Identity = 141/223 (63.23%), Postives = 154/223 (69.06%), Query Frame = 0


Query: 1   MKLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKQKPKQWCAYLIISSNSP 60
           M+LLSQTFR QKP  SN ++SK SSSSTKDP    LIVKS+P  KPKQWC YLIISSNSP
Sbjct: 1   MRLLSQTFRTQKPSNSNSQLSKSSSSSTKDP---ILIVKSEP--KPKQWCVYLIISSNSP 60

Query: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEAREDIPGEWTS 120
           IKTYVGVTLDFDRRLKQHNGEIKGGAKATR GRPW+CACTIHGFKDQ +           
Sbjct: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRTGRPWLCACTIHGFKDQGQ----------- 120

Query: 121 KCCRNCPRRPMKDTCRTSENIRRALALWKGCVNLYFDLPACEFESKWKEVSRKMAHKRVK 180
                                                  ACEFESKWKEVSRK+++K+ +
Sbjct: 121 ---------------------------------------ACEFESKWKEVSRKISYKKKE 168

Query: 181 DDMGMQGDDQTSRLLKHRQRALEKVKCLFDCSQFEFDWQLDPF 224
           DDMG Q DDQT RLLKHRQRAL KVKCLFDCSQFEF+W+LDPF
Sbjct: 181 DDMGKQVDDQTLRLLKHRQRALGKVKCLFDCSQFEFNWKLDPF 168

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BLAST of Lag0031119 vs. NCBI nr
Match: XP_022152567.1 (structure-specific endonuclease subunit SLX1 [Momordica charantia])

HSP 1 Score: 245.7 bits (626), Expect = 3.7e-61
Identity = 136/223 (60.99%), Postives = 147/223 (65.92%), Query Frame = 0


Query: 1   MKLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKQKPKQWCAYLIISSNSP 60
           M+LLS TFRC K PISNP+ S  SSSSTKDPS ATL  +S  + KPK WC YLIISSNSP
Sbjct: 33  MRLLSHTFRCHKSPISNPKPS--SSSSTKDPSAATLSFES--QLKPKPWCVYLIISSNSP 92

Query: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEAREDIPGEWTS 120
            KTYVGVTL+F RRLKQHNGEIKGGAKATRAGRPWVCAC IHGFKDQS+           
Sbjct: 93  FKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGFKDQSQ----------- 152

Query: 121 KCCRNCPRRPMKDTCRTSENIRRALALWKGCVNLYFDLPACEFESKWKEVSRKMAHKRVK 180
                                                  ACEFESKWKEVSRK+AHKR K
Sbjct: 153 ---------------------------------------ACEFESKWKEVSRKIAHKRKK 201

Query: 181 DDMGMQGDDQTSRLLKHRQRALEKVKCLFDCSQFEFDWQLDPF 224
           DD   Q D+Q  RLLK+RQRALEKVK +FDCS+FEFD QLDPF
Sbjct: 213 DDEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDGQLDPF 201

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BLAST of Lag0031119 vs. NCBI nr
Match: XP_022934184.1 (structure-specific endonuclease subunit slx1 [Cucurbita moschata])

HSP 1 Score: 237.3 bits (604), Expect = 1.3e-58
Identity = 134/222 (60.36%), Postives = 147/222 (66.22%), Query Frame = 0


Query: 1   MKLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKQKPKQWCAYLIISSNSP 60
           M+LLSQTFR QK PIS+PEVSK SSSSTK P   TLIVKS+P  +PK+WC YLIISSN P
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVP---TLIVKSEP--EPKKWCVYLIISSNPP 60

Query: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEAREDIPGEWTS 120
           IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CAC IHGFKDQS+           
Sbjct: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQ----------- 120

Query: 121 KCCRNCPRRPMKDTCRTSENIRRALALWKGCVNLYFDLPACEFESKWKEVSRKMAHKRVK 180
                                                  ACEFESKWKE+ RKM H R K
Sbjct: 121 ---------------------------------------ACEFESKWKEICRKMCHMR-K 162

Query: 181 DDMGMQGDDQTSRLLKHRQRALEKVKCLFDCSQFEFDWQLDP 223
           +++    DD T RLLK RQRAL KVK LFDC+QFEFDW+LDP
Sbjct: 181 EEV----DDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 162

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BLAST of Lag0031119 vs. ExPASy Swiss-Prot
Match: B6JY16 (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) OX=402676 GN=slx1 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.6e-13
Identity = 42/120 (35.00%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 49  WCAYLIISSNSPIKT-YVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQ 108
           +C YL++S  +  ++ Y+G T D  RRL+QHNGEIKGGA  T+  RPW  AC +HGF  +
Sbjct: 3   YCCYLLVSEKAASRSVYIGSTPDPARRLRQHNGEIKGGAYKTKRSRPWKVACFVHGFPTK 62

Query: 109 SEAREDIPGEWTSKCCRNCPRRPMKDTCRTSENIRRALALWKGCVNLYFDLPACEFESKW 168
             A   +  EW  +  ++     ++   R     R+ L     CV     +  CE  S+W
Sbjct: 63  IAA---LQFEWVWQHPQSTRHDDLRQHSRVVSVKRQTLL---SCVRALGVMLCCEAWSRW 116

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BLAST of Lag0031119 vs. ExPASy Swiss-Prot
Match: Q9P7M3 (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=slx1 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.2e-10
Identity = 36/92 (39.13%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 49  WCAYLIIS--SNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKD 108
           +C YL+ S  + S    Y+G T D  RRL+QHNGEI GGA  T+ GRPW  +C ++GF +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGEIVGGASKTKHGRPWSISCLVYGFPN 66

Query: 109 QSEAREDIPGEWT------SKCCRNCPRRPMK 133
           +  A   +  EW       S+  ++C  R  K
Sbjct: 67  KVSA---LKFEWNWQNLGISRYTKDCDFRSKK 95

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BLAST of Lag0031119 vs. ExPASy Swiss-Prot
Match: B6QFH5 (Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333) OX=441960 GN=slx1 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.8e-09
Identity = 34/80 (42.50%), Postives = 42/80 (52.50%), Query Frame = 0


Query: 42  PKQKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWVCAC 101
           PK  P  +C YL+ S   P   Y+G T D  RRL+QHNG  KGGAK T     RPW    
Sbjct: 12  PKPIPAFYCCYLLRSVKKPSSLYIGSTPDPARRLEQHNGFTKGGAKRTERDTLRPWEMIT 71

Query: 102 TIHGFKDQSEAREDIPGEWT 120
            I GF  ++ A   +  EW+
Sbjct: 72  IIEGFTSRTGA---LQFEWS 88

[Close]

BLAST of Lag0031119 vs. ExPASy Swiss-Prot
Match: B8MDD1 (Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006) OX=441959 GN=slx1 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-08
Identity = 32/79 (40.51%), Postives = 42/79 (53.16%), Query Frame = 0


Query: 43  KQKPKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAG--RPWVCACT 102
           K  P  +C YL+ S+  P   Y+G T D  RRL+QHNG  KGGAK T     RPW     
Sbjct: 13  KPIPAFYCCYLLRSAKRPSALYIGSTPDPARRLEQHNGFAKGGAKRTERNTLRPWEMVAI 72

Query: 103 IHGFKDQSEAREDIPGEWT 120
           + GF  ++ A   +  EW+
Sbjct: 73  VEGFPSRTGA---LQFEWS 88

[Close]

BLAST of Lag0031119 vs. ExPASy Swiss-Prot
Match: A8PWH1 (Structure-specific endonuclease subunit SLX1 OS=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) OX=425265 GN=SLX1 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-08
Identity = 29/74 (39.19%), Postives = 42/74 (56.76%), Query Frame = 0


Query: 46  PKQWCAYLIISSNSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFK 105
           P+ +  Y + S + P +TY+G T D  RRL+QHNG +K GA  TR  RPW     ++GF 
Sbjct: 12  PRVYVCYCLRSLSRPNQTYIGSTPDPIRRLRQHNGLVKQGAFYTRMARPWTMDVVVYGFP 71

Query: 106 DQSEAREDIPGEWT 120
            +  A   +  EW+
Sbjct: 72  SKLAA---LQFEWS 82

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BLAST of Lag0031119 vs. ExPASy TrEMBL
Match: A0A0A0LCZ9 (GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.5e-68
Identity = 140/223 (62.78%), Postives = 157/223 (70.40%), Query Frame = 0


Query: 1   MKLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKQKPKQWCAYLIISSNSP 60
           M+LLS TFRC KPPISNP +SK SSSS+KDP   TLIVKS+PK K KQWC YLIISSNSP
Sbjct: 1   MRLLSHTFRCVKPPISNPPLSKSSSSSSKDP---TLIVKSEPKPKLKQWCVYLIISSNSP 60

Query: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEAREDIPGEWTS 120
           IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CACTIHGFKDQS+           
Sbjct: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACTIHGFKDQSQ----------- 120

Query: 121 KCCRNCPRRPMKDTCRTSENIRRALALWKGCVNLYFDLPACEFESKWKEVSRKMAHKRVK 180
                                                  ACEFESKWK+VSRK+++++ +
Sbjct: 121 ---------------------------------------ACEFESKWKKVSRKISYEKKE 170

Query: 181 DDMGMQGDDQTSRLLKHRQRALEKVKCLFDCSQFEFDWQLDPF 224
           +D+G   DDQT RLLKHR+RAL KVKCLFDCSQFEFDW+LDPF
Sbjct: 181 EDVGKLLDDQTLRLLKHRERALGKVKCLFDCSQFEFDWKLDPF 170

[Close]

BLAST of Lag0031119 vs. ExPASy TrEMBL
Match: A0A1S3CFH5 (structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC103500344 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 6.3e-67
Identity = 139/223 (62.33%), Postives = 156/223 (69.96%), Query Frame = 0


Query: 1   MKLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKQKPKQWCAYLIISSNSP 60
           M+LLSQTFRCQKPPISNP + K SSSSTK P   TLIVK + + KPKQWC YLIISSNSP
Sbjct: 1   MRLLSQTFRCQKPPISNPRLPKSSSSSTKGP---TLIVKLE-EPKPKQWCVYLIISSNSP 60

Query: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEAREDIPGEWTS 120
           IKTYVGVTLDFDRRLKQHNGEIKGGAKAT+AGRPW+CACTIHGFKDQS+           
Sbjct: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATQAGRPWICACTIHGFKDQSQ----------- 120

Query: 121 KCCRNCPRRPMKDTCRTSENIRRALALWKGCVNLYFDLPACEFESKWKEVSRKMAHKRVK 180
                                                  ACEFESKWK+VSRK+++++ +
Sbjct: 121 ---------------------------------------ACEFESKWKKVSRKISYEKKE 169

Query: 181 DDMGMQGDDQTSRLLKHRQRALEKVKCLFDCSQFEFDWQLDPF 224
           DD+G Q D+QT RLLKHRQRAL KVKCLFDCS FEFDW+LDPF
Sbjct: 181 DDVGKQLDNQTLRLLKHRQRALGKVKCLFDCSHFEFDWKLDPF 169

[Close]

BLAST of Lag0031119 vs. ExPASy TrEMBL
Match: A0A6J1DGL6 (structure-specific endonuclease subunit SLX1 OS=Momordica charantia OX=3673 GN=LOC111020266 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.8e-61
Identity = 136/223 (60.99%), Postives = 147/223 (65.92%), Query Frame = 0


Query: 1   MKLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKQKPKQWCAYLIISSNSP 60
           M+LLS TFRC K PISNP+ S  SSSSTKDPS ATL  +S  + KPK WC YLIISSNSP
Sbjct: 33  MRLLSHTFRCHKSPISNPKPS--SSSSTKDPSAATLSFES--QLKPKPWCVYLIISSNSP 92

Query: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEAREDIPGEWTS 120
            KTYVGVTL+F RRLKQHNGEIKGGAKATRAGRPWVCAC IHGFKDQS+           
Sbjct: 93  FKTYVGVTLNFSRRLKQHNGEIKGGAKATRAGRPWVCACMIHGFKDQSQ----------- 152

Query: 121 KCCRNCPRRPMKDTCRTSENIRRALALWKGCVNLYFDLPACEFESKWKEVSRKMAHKRVK 180
                                                  ACEFESKWKEVSRK+AHKR K
Sbjct: 153 ---------------------------------------ACEFESKWKEVSRKIAHKRKK 201

Query: 181 DDMGMQGDDQTSRLLKHRQRALEKVKCLFDCSQFEFDWQLDPF 224
           DD   Q D+Q  RLLK+RQRALEKVK +FDCS+FEFD QLDPF
Sbjct: 213 DDEEEQADEQKLRLLKNRQRALEKVKFMFDCSRFEFDGQLDPF 201

[Close]

BLAST of Lag0031119 vs. ExPASy TrEMBL
Match: A0A6J1F1V2 (structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LOC111441428 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 6.3e-59
Identity = 134/222 (60.36%), Postives = 147/222 (66.22%), Query Frame = 0


Query: 1   MKLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKQKPKQWCAYLIISSNSP 60
           M+LLSQTFR QK PIS+PEVSK SSSSTK P   TLIVKS+P  +PK+WC YLIISSN P
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVP---TLIVKSEP--EPKKWCVYLIISSNPP 60

Query: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEAREDIPGEWTS 120
           IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CAC IHGFKDQS+           
Sbjct: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKDQSQ----------- 120

Query: 121 KCCRNCPRRPMKDTCRTSENIRRALALWKGCVNLYFDLPACEFESKWKEVSRKMAHKRVK 180
                                                  ACEFESKWKE+ RKM H R K
Sbjct: 121 ---------------------------------------ACEFESKWKEICRKMCHMR-K 162

Query: 181 DDMGMQGDDQTSRLLKHRQRALEKVKCLFDCSQFEFDWQLDP 223
           +++    DD T RLLK RQRAL KVK LFDC+QFEFDW+LDP
Sbjct: 181 EEV----DDVTLRLLKQRQRALGKVKGLFDCTQFEFDWELDP 162

[Close]

BLAST of Lag0031119 vs. ExPASy TrEMBL
Match: A0A6J1J5C9 (structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481456 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 2.4e-58
Identity = 132/223 (59.19%), Postives = 148/223 (66.37%), Query Frame = 0


Query: 1   MKLLSQTFRCQKPPISNPEVSKPSSSSTKDPSPATLIVKSKPKQKPKQWCAYLIISSNSP 60
           M+LLSQTFR QK PIS+PEVSK SSSSTK P   TL +KS+P  + K+WC YLIISSN P
Sbjct: 1   MRLLSQTFRSQKLPISSPEVSKSSSSSTKVP---TLTIKSEP--ETKKWCVYLIISSNPP 60

Query: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEAREDIPGEWTS 120
           IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPW+CAC IHGFK+QS+           
Sbjct: 61  IKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWICACKIHGFKNQSQ----------- 120

Query: 121 KCCRNCPRRPMKDTCRTSENIRRALALWKGCVNLYFDLPACEFESKWKEVSRKMAHKRVK 180
                                                  ACEFESKWKE+ RKM+H R K
Sbjct: 121 ---------------------------------------ACEFESKWKEICRKMSHMR-K 163

Query: 181 DDMGMQGDDQTSRLLKHRQRALEKVKCLFDCSQFEFDWQLDPF 224
           +++    DDQT RLLK RQRAL KVK LFDC+QFEFDW+LDPF
Sbjct: 181 EEV----DDQTLRLLKQRQRALGKVKGLFDCTQFEFDWELDPF 163

[Close]

BLAST of Lag0031119 vs. TAIR 10
Match: AT5G43210.1 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 135.2 bits (339), Expect = 6.5e-32
Identity = 87/223 (39.01%), Postives = 112/223 (50.22%), Query Frame = 0


Query: 2   KLLSQTFRCQKPPISN---PEVSKPSSSSTKDPSPATLIVKSKPK-QKPKQWCAYLIISS 61
           +LLS+TF   K   SN   PE     +S T+ P P++   +   K  K K W  YLI+S+
Sbjct: 3   RLLSRTFPSVKLRDSNPKAPEFKNLKNSQTQVPIPSSSSPQENSKIPKSKSWSVYLILST 62

Query: 62  NSPIKTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHGFKDQSEAREDIPGE 121
             PIKTYVG+T DF RRLKQHNGEI+GGAKA+ AGRPW+CAC I GF             
Sbjct: 63  TEPIKTYVGITTDFSRRLKQHNGEIRGGAKASSAGRPWLCACIITGF------------- 122

Query: 122 WTSKCCRNCPRRPMKDTCRTSENIRRALALWKGCVNLYFDLPACEFESKWKEVSRKMAHK 181
                           TC +                      A  FESKWK  +RK+  +
Sbjct: 123 ----------------TCLSQ---------------------ASSFESKWKIFTRKLPRR 170

Query: 182 RVKDDMGMQGDDQTSRLLKHRQRALEKVKCLFDCSQFEFDWQL 221
           +  +DM      Q+  LL+HR+RAL KV+   DCS  E DW++
Sbjct: 183 KKDEDM-----SQSDALLQHRRRALNKVEESLDCSYLETDWKI 170

[Close]

BLAST of Lag0031119 vs. TAIR 10
Match: AT2G30350.2 (Excinuclease ABC, C subunit, N-terminal )

HSP 1 Score: 52.8 bits (125), Expect = 4.2e-07
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 47  KQWCAYLIISSNSPI---KTYVGVTLDFDRRLKQHNGEIKGGAKATRAGRPWVCACTIHG 105
           K + A  +++S SP    +TY+G T++  RR++QHNGEI  GA  T+  RPW     I+G
Sbjct: 25  KGFFACYLLTSLSPRHKGQTYIGFTVNPRRRIRQHNGEITSGAWRTKKKRPWEMVLCIYG 84

The following BLAST results are available for this feature:

BLAST of Lag0031119 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151512.1	3.1e-68	62.78	structure-specific endonuclease subunit SLX1 [Cucumis sativus] >KGN58557.1 hypot...	[more]
XP_008461838.1	1.3e-66	62.33	PREDICTED: structure-specific endonuclease subunit slx1 [Cucumis melo] >XP_00846...	[more]
XP_038903984.1	1.7e-66	63.23	structure-specific endonuclease subunit slx1 isoform X1 [Benincasa hispida]	[more]
XP_022152567.1	3.7e-61	60.99	structure-specific endonuclease subunit SLX1 [Momordica charantia]	[more]
XP_022934184.1	1.3e-58	60.36	structure-specific endonuclease subunit slx1 [Cucurbita moschata]	[more]

BLAST of Lag0031119 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6JY16	6.6e-13	35.00	Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces japonicus (s...	[more]
Q9P7M3	5.2e-10	39.13	Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe (strai...	[more]
B6QFH5	9.8e-09	42.50	Structure-specific endonuclease subunit slx1 OS=Talaromyces marneffei (strain AT...	[more]
B8MDD1	2.2e-08	40.51	Structure-specific endonuclease subunit slx1 OS=Talaromyces stipitatus (strain A...	[more]
A8PWH1	2.9e-08	39.19	Structure-specific endonuclease subunit SLX1 OS=Malassezia globosa (strain ATCC ...	[more]

BLAST of Lag0031119 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCZ9	1.5e-68	62.78	GIY-YIG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G683170 PE=...	[more]
A0A1S3CFH5	6.3e-67	62.33	structure-specific endonuclease subunit slx1 OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A6J1DGL6	1.8e-61	60.99	structure-specific endonuclease subunit SLX1 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1F1V2	6.3e-59	60.36	structure-specific endonuclease subunit slx1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1J5C9	2.4e-58	59.19	structure-specific endonuclease subunit slx1 isoform X1 OS=Cucurbita maxima OX=3...	[more]

BLAST of Lag0031119 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43210.1	6.5e-32	39.01	Excinuclease ABC, C subunit, N-terminal	[more]
AT2G30350.2	4.2e-07	42.62	Excinuclease ABC, C subunit, N-terminal	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000305	GIY-YIG endonuclease	PFAM	PF01541	GIY-YIG	coord: 48..112 e-value: 4.5E-10 score: 39.7
IPR000305	GIY-YIG endonuclease	PROSITE	PS50164	GIY_YIG	coord: 47..124 score: 11.133994
IPR035901	GIY-YIG endonuclease superfamily	GENE3D	3.40.1440.10		coord: 43..204 e-value: 6.7E-19 score: 69.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR20208	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	coord: 23..135
None	No IPR available	PANTHER	PTHR20208:SF13	EMB\|CAB76036.1	coord: 160..222
None	No IPR available	PANTHER	PTHR20208	STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1	coord: 160..222
None	No IPR available	PANTHER	PTHR20208:SF13	EMB\|CAB76036.1	coord: 23..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031119.1	Lag0031119.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0033557	Slx1-Slx4 complex
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0008821	crossover junction endodeoxyribonuclease activity