Lag0031111 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031111
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transcription factor, Myb superfamily
Location	chr11: 4924277 .. 4929024 (-)
RNA-Seq Expression	Lag0031111
Synteny	Lag0031111

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGAGCTCCATGCTGTGATAAAAATGGCCTGAAAAAAGGTCCATGGACTCGTGAGGAAGATCAAAAGCTCGTTACCTATATCCAGATTCATGGGCCTGGAAATTGGCGTAATCTTCCTAAAAATGTTGGTATTTTTCTAATTCTTCTGTGTGTTTTCTTTATGGGGTTGTTGAAATTCAAGAGCAAAAATGAAAAGTTGGGGGTTTTTTTTCTATCACTGATAGAATCTATCAGTGATAGAAAAGTTTCTATCAGTGATAGAATTAACTTTCTATCACTGATAGAAAATTTTTCTATCAGTGATAGAAACGTTTCTATCAGTGATAGAAAAGTTTTCTATCACTGATAGAATCTATCAGTGATAGAAACGTTTCTATCAATGATAGAAACGTTTCTATCAGTGATAGATTCTATCAGTGATAGAAAAATTACTGATAGAAAAACGTTTCTATCACTGATAGAAACGTTTCTATCACTGATAGAATCTATCAGTGATAGAAACGTTTCTATCACTGATAGAAAGTTAATTCTATCAGTGTTTTTTTCTATCACTGATAGATTCTATCAATGATAGAAAAACGTTCTATCAGTGACAGAAAATTTCTATCACTGATAGAAATAATTCTATCACTGATAGATTCTATCACTGATTTCTATCACTGATAGATTCTATCAGTGATAGAAAAACTTCTATCACTGATAGAAAGTGATAGAAAAACTTCTATCAGTGATAGAAAAACTTCTATCACTGATAGAGTTTTTCTATCAGTGATAGAATCTATCAGTGATAGAAAAATTTTCTATCAGATAGAAAGTTCTTCTATCAGATAGAAAGTTCTCAACTTTCTATCTGATAGAAAGTTTTTCTATCACTGATAGAGTTCTCAACTTTCTATCTGATAGAAAGAACTTTCTATCTGATAGAAAGTTTTTCTATCACTGATAATCTATCAGTGATAGAAAAACTTTCTATCAGATAGAAACCTACCAAAACAAAAATTGAGGAGACCACGCGCGCGCAAGGGCAAAATAGGGATATAAAAAATTAATTCAAAAATTTTGCCATATTTGCAAATATTTTAAAAAATTGCTAAAATTGCAATTATTTACCCTAATTTTGCCACCCATTACAATTATCCATTTATTTATTCTTTTTGAAGCATTATTTTGTTCATTTATGTAAGTTAATTAATCTTCGTTTTAACTGCCTGGTCGTTGTCAACTCTTCTTCATTGTCTAATTGACTTAATATTTCTATATTTATTTATTTTTTCTGATTAAAAAATTGCAAAATTTAGCGTATAGAACCATCTTTCTACTGGCTTCATTATTATTTATTATGCATGAATATCCATTATTTTAAGGGATTCATTATATTTGTACTTAAAAATTGCATAACCATTATTTTAAGGGATTCATTATATTTGTACTTCAAAATTTTAATTTTATCGAGCTAAACCATCTATATCTATTTTAATCTTTTGATTTTTCCTTTCGTCTCAAATTTCTTCTTTTGCACTTTTTAATTAATTAATTAATAATTATATATATATATATATATACATTAAACAATATTGAAATAAATTTATATCTATACTCTATATAGAAGGGACTGTAAGGAGAAACTGGGCCCGTTTGGTAATTTCTTGTTTTCGTTTATTCATCTTTAATAAAGAAAAATAGAATTTCATGACCCTAACACCTATATATTCAATAATAAACCTATATTCTTAATTATGTTTGAAAAAATTAAAAACAATAACAAAAAATGAGAAACTAGTTTTAATTGTTCCCAAAAGTTCTATACAAATTTTGGGAGTGCTTCTAAAAAAATGAGAAACAATAAACATACATAGTTATTAAATGCTTGGATTTCTTAATAAAATTGGAAACACGAAACAAGAAACGCATTACCAAACGGATCCTATATATTTCGTTTCTTTTATTTATTGTAATTATTTTAATTAATTATTAATTATGTAAAGTTTTAATTTGAACAATGAACGTGATTCAACATGAATGAAAGTGTTCCAACTTCTACAAACACTATTTATTACTCTAACTTTATTGTAAAAATTTATTGGAACTCTTCCACATTCTTTATTACCCTAACTTCAATTAAAAATTAACCTTAATCAATCATTATAAATTTGATAAAATTGTTCAAGGAAAAAAAAAGAGACTCTCCACATCATATCATATATAATCTATCCACAAATGAACGGTGTACTGTTGCAGCAAAGTACACAAGTGATGTGAGACTAAGGTATGCAATGGTAATAAAAAAAAAAAAAAAAAACTCTTTATGAGAGTGTCTTTTCTAGAGGATATAACTTTTTTGCAAAGGATATGTCCTTCGTGAAAATATATAGCTCCGTGTTAAGAGATGTGTAGATAGTTCGTAAATACATGGGTTATTCAGTAGTAAACATTTTTTTTTGTCCTCGGTGGTTCCTAGGTTGATGTACAAAATTAGCAAAGGAAAAAACGCTTGACCTGGCATGTGCTTCAATTGTAAAAAGTAGTATATATCACATATCGATATTTTCACATGAACCGTTTTTACACTTGATTGCCTACATATTATGATCTTTATGATCATTTAACATATGCTGATTCATCTCGATACACTGCAATCAAACAAACTTGCAATCAAAGTTAATTTTTTAAGAAAAAGTAACCAAGCACGCTGACATTGTAACTAAAATAACTTTTATAAATGACACCTATTAAGAGAAATATATTTAACTAGCAAGACTTATCTTTTGTATGGTACTCATATCAAATTTTCGTTGACTTGTCTATATTTTCTCATTGTCCATGGATTCAACATCGACATGAGAGTTTAATCGACATTTTTCTTTTAAATTTATTGTGGCGTCAAACAAGTATGACACGTGTTTCAAGGTCGTCTCTCTTTGACCAAAAATTTAAACCTACAATTCTTTAATAATAAGTTTCAAAACAGCTATATTTCAATAATAAGTTTTAAAAATTGTAATATTAATAAAAAAAATGTCCGGAAAAGAATGTTTAAAAGAGAGAAATATTAGAGACAAATGGTTCAAAAGTGAGGAAAAAAAGAGAGAAGAAATAAAAGTAAAAAGCTAGAATAATTGGGACAAAATGAGAAAATTTTAATATTTGAGACTGCATATTTAGAAAAAAAAAATGAGAAAAAACTTATATGAAACAAAAGGTAAAAGATGACATGAGAGTAAAATTTAAACTCTTTTTTTTTTAAAAGAATTTAAACTCAACTTAGTGACAAGGTTTAATTTGTGTTCTTACTACGAAAGTGAATTCAAAAAGCATTTGATTTTGCGGATGAAATGAAAAGGATATTTTGTGAAAATAATTTTAATTTCACATTTATAAAATGAAAATGTTATGTGATTGCCGAAAGAATGTCTCTTTTTTCTTATAATGAATTTAATTTTCTATTTTTGATAATTAGTTTTGGCTTCCATTTTTTAAAAATGAGGTGGTTTTTTTGTATAAGAAAAGAAACAAGGTTTGTTTGAGAATGATAACCATATTTACTTTATAGTAGTTTTTTATGTAAATTTTAAGTTTGTTTGCATTTTATATTTCTCTCTATACTAACTAATCTTCCTCTCTTTAACTTTCTCTAACCAATCAGATTGGTCCAATCTTTCCAGGTTTTTTATTTTAAATTGTTTGTACATATGAGTAAGTGTTGAATAAGTAGCAAATAAATACATGTACGTGGTAAAATTATAGATTTATAAGATATTTTATTTTATGCCAGAGATATATTATATGATGATTAGATGAAACTATTTGTCTAAGGTGGTTTTTTTTTTTTTGGGTCTGTTATGTTGGACATTTATATCTATCCAAAAACATGATTTATTAATGGGTTCGAGCTTCATGGGATTGGATATTGTAGTTATGTCATGTTCGGTGTATCTAGAATGTGTATATTTGGTTTATGATTTCGCTTTGAATTGTTCAATTAAGTAGAGGTGTGTATAAAATGAAAATATTTCTATTTTGACTTTTTTTAAAAATAAAATAAAATATACCTTTTGATCTTATCATATGGAGATTTTATTCAAGTTGGGAGAATTGATTTTGTTGAATAAAAAGAAATAATAAATTAAGTTAAAAGAAAAGTAAATGTAAAAAGTTCAAAAATATTTTCATGGCATGATTGAATTTGTGATTTTGGTGAAAAGGTTGCTATCTACCATTCAAATTTGCATGCCTTTCAATTTCTATTGTTTTCTTAAGAAGAAAAATCTATAGTTTCTACAATATACATGAAATTTTTTGTTTACCACTATACTTTTAATAATTACCTACAACATTAAACACACCTATAGGTAGATGTGTTCTCATCAGTTAAATAGTAAAAAGAAAGAAAAAAAATCATATTTATATACTATATATGAAAAATTAATTACAAACAATAAAATAACTTGTTAAGTCGAATTAAGATTAAAAAAAAATGGACATTTTTAAAAATATAGGACCTTAAATTTACTTTTTCTCGCAACCGCCGCGCCGGCGTCCTCCCACCGGCTGAAACCGGCGCCGAATTCTCCGGCCACGAAATTCGATCCGATGATTGTGATTGTTGCGCTGGCGATGGTGGTGCTGTGGGGGCGACTCTGCGCCATACTCTGCACGTTGGCGCTGTTTTACTTCGGCCGCCGGCGGACATCAGAAGTTGAACGGGACGGCGGTGGCGGCGGCGGTTTTGGAAGGGTTTCTTGA

mRNA sequence

ATGGGAAGAGCTCCATGCTGTGATAAAAATGGCCTGAAAAAAGGTCCATGGACTCGTGAGGAAGATCAAAAGCTCGTTACCTATATCCAGATTCATGGGCCTGGAAATTGGCGTAATCTTCCTAAAAATGTTGCAAAGTACACAAGTGATGTGAGACTAAGGACCTTAAATTTACTTTTTCTCGCAACCGCCGCGCCGGCGTCCTCCCACCGGCTGAAACCGGCGCCGAATTCTCCGGCCACGAAATTCGATCCGATGATTGTGATTGTTGCGCTGGCGATGGTGGTGCTGTGGGGGCGACTCTGCGCCATACTCTGCACGTTGGCGCTGTTTTACTTCGGCCGCCGGCGGACATCAGAAGTTGAACGGGACGGCGGTGGCGGCGGCGGTTTTGGAAGGGTTTCTTGA

Coding sequence (CDS)

ATGGGAAGAGCTCCATGCTGTGATAAAAATGGCCTGAAAAAAGGTCCATGGACTCGTGAGGAAGATCAAAAGCTCGTTACCTATATCCAGATTCATGGGCCTGGAAATTGGCGTAATCTTCCTAAAAATGTTGCAAAGTACACAAGTGATGTGAGACTAAGGACCTTAAATTTACTTTTTCTCGCAACCGCCGCGCCGGCGTCCTCCCACCGGCTGAAACCGGCGCCGAATTCTCCGGCCACGAAATTCGATCCGATGATTGTGATTGTTGCGCTGGCGATGGTGGTGCTGTGGGGGCGACTCTGCGCCATACTCTGCACGTTGGCGCTGTTTTACTTCGGCCGCCGGCGGACATCAGAAGTTGAACGGGACGGCGGTGGCGGCGGCGGTTTTGGAAGGGTTTCTTGA

Protein sequence

MGRAPCCDKNGLKKGPWTREEDQKLVTYIQIHGPGNWRNLPKNVAKYTSDVRLRTLNLLFLATAAPASSHRLKPAPNSPATKFDPMIVIVALAMVVLWGRLCAILCTLALFYFGRRRTSEVERDGGGGGGFGRVS

Homology

[Close]

BLAST of Lag0031111 vs. NCBI nr
Match: KAG7011947.1 (Transcription factor MYB-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 101.3 bits (251), Expect = 6.8e-18
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MGRAPCCDKNGLKKGPWTREEDQKLVTYIQIHGPGNWRNLPKN--VAKYTSDVRLRTLNL 60
          MGRAPCCDKNGLKKGPWT EEDQKLV+YIQIHGPGNWRNLPKN  + +     RLR  N 
Sbjct: 1  MGRAPCCDKNGLKKGPWTPEEDQKLVSYIQIHGPGNWRNLPKNAGLRRCGKSCRLRWTNY 60

[Close]

BLAST of Lag0031111 vs. NCBI nr
Match: KAG6572334.1 (Transcription factor MYB102, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.3 bits (251), Expect = 6.8e-18
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MGRAPCCDKNGLKKGPWTREEDQKLVTYIQIHGPGNWRNLPKN--VAKYTSDVRLRTLNL 60
          MGRAPCCDKNGLKKGPWT EEDQKLV+YIQIHGPGNWRNLPKN  + +     RLR  N 
Sbjct: 1  MGRAPCCDKNGLKKGPWTPEEDQKLVSYIQIHGPGNWRNLPKNAGLRRCGKSCRLRWTNY 60

[Close]

BLAST of Lag0031111 vs. NCBI nr
Match: XP_023554539.1 (transcription factor MYB102-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 101.3 bits (251), Expect = 6.8e-18
Identity = 46/61 (75.41%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MGRAPCCDKNGLKKGPWTREEDQKLVTYIQIHGPGNWRNLPKN--VAKYTSDVRLRTLNL 60
          MGRAPCCDKNGLKKGPWT EEDQKLV+YIQIHGPGNWRNLPKN  + +     RLR  N 
Sbjct: 1  MGRAPCCDKNGLKKGPWTPEEDQKLVSYIQIHGPGNWRNLPKNAGLRRCGKSCRLRWTNY 60

[Close]

BLAST of Lag0031111 vs. NCBI nr
Match: XP_022969164.1 (transcription factor MYB41-like [Cucurbita maxima])

HSP 1 Score: 100.9 bits (250), Expect = 8.8e-18
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MGRAPCCDKNGLKKGPWTREEDQKLVTYIQIHGPGNWRNLPKN--VAKYTSDVRLRTLNL 60
          MGRAPCCDKNGLKKGPWT EEDQKLV+Y+QIHGPGNWRNLPKN  + +     RLR  N 
Sbjct: 1  MGRAPCCDKNGLKKGPWTPEEDQKLVSYVQIHGPGNWRNLPKNAGLRRCGKSCRLRWTNY 60

[Close]

BLAST of Lag0031111 vs. NCBI nr
Match: KAE8645760.1 (hypothetical protein Csa_020345 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 8.8e-18
Identity = 46/61 (75.41%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1   MGRAPCCDKNGLKKGPWTREEDQKLVTYIQIHGPGNWRNLPKN--VAKYTSDVRLRTLNL 60
           MGRAPCCDKNGLKKGPWT EEDQKLV YIQIHGPGNWRNLPKN  + +     RLR  N 
Sbjct: 318 MGRAPCCDKNGLKKGPWTPEEDQKLVNYIQIHGPGNWRNLPKNAGLQRCGKSCRLRWTNY 377

[Close]

BLAST of Lag0031111 vs. ExPASy Swiss-Prot
Match: Q9M0J5 (Transcription factor MYB41 OS=Arabidopsis thaliana OX=3702 GN=MYB41 PE=1 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-18
Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 1  MGRAPCCDKNGLKKGPWTREEDQKLVTYIQIHGPGNWRNLPKNVAKYT--SDVRLRTLNL 60
          MGR+PCCDKNG+KKGPWT EEDQKL+ YI+ HGPGNWR LPKN   +      RLR  N 
Sbjct: 1  MGRSPCCDKNGVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAGLHRCGKSCRLRWTNY 60

[Close]

BLAST of Lag0031111 vs. ExPASy Swiss-Prot
Match: Q9LDR8 (Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-16
Identity = 40/61 (65.57%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 1  MGRAPCCDKNGLKKGPWTREEDQKLVTYIQIHGPGNWRNLPKN--VAKYTSDVRLRTLNL 60
          M R+PCC+KNGLKKGPWT EEDQKLV YIQ HG GNWR LPKN  + +     RLR  N 
Sbjct: 1  MARSPCCEKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

[Close]

BLAST of Lag0031111 vs. ExPASy Swiss-Prot
Match: Q9M0Y5 (Transcription factor MYB74 OS=Arabidopsis thaliana OX=3702 GN=MYB74 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.6e-16
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 1  MGRAPCCD-KNGLKKGPWTREEDQKLVTYIQIHGPGNWRNLPKN--VAKYTSDVRLRTLN 60
          MGR+PCC+ KNGLKKGPWT EEDQKL+ YI IHG GNWR LPKN  + +     RLR  N
Sbjct: 1  MGRSPCCEKKNGLKKGPWTPEEDQKLIDYINIHGYGNWRTLPKNAGLQRCGKSCRLRWTN 60

[Close]

BLAST of Lag0031111 vs. ExPASy Swiss-Prot
Match: Q8GYP5 (Transcription factor MYB60 OS=Arabidopsis thaliana OX=3702 GN=MYB60 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.6e-15
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 1  MGRAPCCDKNGLKKGPWTREEDQKLVTYIQIHGPGNWRNLPKN--VAKYTSDVRLRTLNL 60
          MGR PCCDK G+KKGPWT EED  LV+YIQ HGPGNWR++P N  + + +   RLR  N 
Sbjct: 1  MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60

[Close]

BLAST of Lag0031111 vs. ExPASy Swiss-Prot
Match: B3VTV7 (Transcription factor MYB60 OS=Vitis vinifera OX=29760 GN=MYB60 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.6e-15
Identity = 37/61 (60.66%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 1  MGRAPCCDKNGLKKGPWTREEDQKLVTYIQIHGPGNWRNLPKN--VAKYTSDVRLRTLNL 60
          MGR PCCDK G+KKGPWT EED  LV+YIQ HGPGNWR++P N  + + +   RLR  N 
Sbjct: 1  MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNY 60

The following BLAST results are available for this feature:

BLAST of Lag0031111 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011947.1	6.8e-18	75.41	Transcription factor MYB-like protein, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6572334.1	6.8e-18	75.41	Transcription factor MYB102, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023554539.1	6.8e-18	75.41	transcription factor MYB102-like [Cucurbita pepo subsp. pepo]	[more]
XP_022969164.1	8.8e-18	73.77	transcription factor MYB41-like [Cucurbita maxima]	[more]
KAE8645760.1	8.8e-18	75.41	hypothetical protein Csa_020345 [Cucumis sativus]	[more]

BLAST of Lag0031111 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0J5	2.4e-18	65.57	Transcription factor MYB41 OS=Arabidopsis thaliana OX=3702 GN=MYB41 PE=1 SV=1	[more]
Q9LDR8	1.7e-16	65.57	Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1	[more]
Q9M0Y5	8.6e-16	64.52	Transcription factor MYB74 OS=Arabidopsis thaliana OX=3702 GN=MYB74 PE=2 SV=1	[more]
Q8GYP5	5.6e-15	60.66	Transcription factor MYB60 OS=Arabidopsis thaliana OX=3702 GN=MYB60 PE=1 SV=1	[more]
B3VTV7	5.6e-15	60.66	Transcription factor MYB60 OS=Vitis vinifera OX=29760 GN=MYB60 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 13..61 e-value: 1.2E-6 score: 38.1
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 9..59 score: 8.559747
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..59 e-value: 2.88466E-8 score: 45.259
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..59 e-value: 1.3E-7 score: 31.7
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 9..63 score: 14.714404
None	No IPR available	GENE3D	1.10.10.60		coord: 11..59 e-value: 4.7E-10 score: 41.3
None	No IPR available	PANTHER	PTHR10641	MYB FAMILY TRANSCRIPTION FACTOR	coord: 1..57
None	No IPR available	PANTHER	PTHR10641:SF1166	TRANSCRIPTION FACTOR MYB30-LIKE	coord: 1..57
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 8..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031111.1	Lag0031111.1	mRNA