Lag0031036 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0031036
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr11: 4053578 .. 4053886 (-)
RNA-Seq Expression	Lag0031036
Synteny	Lag0031036

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGTCTTCATCGGAGCCAACCAACAAGCATGACACAACAAAACCTTCACAAACACAACCAGAAGAACTAATTATTATCAACCAGCTGGAAGGCCTCAATCTAACAGCTGAAGAGAAAGGAAATGTTACTAAAATGGACGACGAGGAGCTCAACCAGAAAGTCCAAGACTTAGAAAATGTAGCAGTGTGCAAGCTTCTGACAGAAAAACACATAAACCCAGAAATTTTCAAGAATATGATCCCCAAAATATGGAAGGTGGTGGGTAGAGTAACCATAAAAAAGGCAGGGGAAAATCTTTTCTAA

mRNA sequence

ATGGAGATGTCTTCATCGGAGCCAACCAACAAGCATGACACAACAAAACCTTCACAAACACAACCAGAAGAACTAATTATTATCAACCAGCTGGAAGGCCTCAATCTAACAGCTGAAGAGAAAGGAAATGTTACTAAAATGGACGACGAGGAGCTCAACCAGAAAGTCCAAGACTTAGAAAATGTAGCAGTGTGCAAGCTTCTGACAGAAAAACACATAAACCCAGAAATTTTCAAGAATATGATCCCCAAAATATGGAAGGTGGTGGGTAGAGTAACCATAAAAAAGGCAGGGGAAAATCTTTTCTAA

Coding sequence (CDS)

ATGGAGATGTCTTCATCGGAGCCAACCAACAAGCATGACACAACAAAACCTTCACAAACACAACCAGAAGAACTAATTATTATCAACCAGCTGGAAGGCCTCAATCTAACAGCTGAAGAGAAAGGAAATGTTACTAAAATGGACGACGAGGAGCTCAACCAGAAAGTCCAAGACTTAGAAAATGTAGCAGTGTGCAAGCTTCTGACAGAAAAACACATAAACCCAGAAATTTTCAAGAATATGATCCCCAAAATATGGAAGGTGGTGGGTAGAGTAACCATAAAAAAGGCAGGGGAAAATCTTTTCTAA

Protein sequence

MEMSSSEPTNKHDTTKPSQTQPEELIIINQLEGLNLTAEEKGNVTKMDDEELNQKVQDLENVAVCKLLTEKHINPEIFKNMIPKIWKVVGRVTIKKAGENLF

Homology

[Close]

BLAST of Lag0031036 vs. NCBI nr
Match: XP_022143536.1 (uncharacterized protein LOC111013413 [Momordica charantia])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 26  IIINQLEGLNLTAEEKGNVTKMDDEELNQKVQDLENVAVCKLLTEKHINPEIFKNMIPKI 85
           ++  Q+E L LT EEKG +  M ++E+    +  +   VCKLLT K+I  E+FKNM+P+I
Sbjct: 5   LLSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRI 64

Query: 86  WKVVGRVTIKKAGENLF 103
           W  V  V I+  G+NLF
Sbjct: 65  WVNV-NVKIESVGKNLF 80

[Close]

BLAST of Lag0031036 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 6.5e-05
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 27  IINQL-EGLNLTAEEKGNVTKMDDEEL----NQKVQDLENVA----VCKLLTEKHINPEI 86
           +++QL E L LT EEKG +  M + E+      +++D +  A    VCKLLT K+I  E+
Sbjct: 5   LLSQLVERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNIPGEV 64

Query: 87  FKNMIPKIWKVVGRVTIKKAGENLF 103
           FKNM+P+IW  V  V I+  G+NLF
Sbjct: 65  FKNMMPRIWANV-NVKIESVGKNLF 88

[Close]

BLAST of Lag0031036 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 6.5e-05
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 0


Query: 27  IINQL-EGLNLTAEEKGNVTKMDDEEL----NQKVQDLENVA----VCKLLTEKHINPEI 86
           +++QL E L LT EEKG +  M + E+      +++D +  A    VCKLLT K+I  E+
Sbjct: 5   LLSQLVERLKLTKEEKGEIFDMGEGEIFDMGEDEIEDYDKQAQFSLVCKLLTLKNIPGEV 64

Query: 87  FKNMIPKIWKVVGRVTIKKAGENLF 103
           FKNM+P+IW  V  V I+  G+NLF
Sbjct: 65  FKNMMPRIWANV-NVKIESVGKNLF 88

The following BLAST results are available for this feature:

BLAST of Lag0031036 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143536.1	1.2e-06	44.16	uncharacterized protein LOC111013413 [Momordica charantia]	[more]
XP_022154990.1	6.5e-05	43.53	uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]	[more]
XP_022154991.1	6.5e-05	43.53	uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]	[more]

BLAST of Lag0031036 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0031036.1	Lag0031036.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding