Lag0030899 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0030899
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	leucine-rich repeat extensin-like protein 2
Location	chr11: 2664860 .. 2665279 (-)
RNA-Seq Expression	Lag0030899
Synteny	Lag0030899

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCTTGGGCTGCCATTTTTCTCTCCTTTTCTCTTCTCTTCCTCCTCATTCACCTCGCCGACGCTCAAACCTCCCCGTCGATATCAATCGGCCCGCAGGATCCCGACGCCGAAATAAAATGTGGATCATGCCCTTGCTCCAACCCATGTGTTCAAAAATTGCCACCACCATCACCGCCGCCGCCACCGAATTGTAACCCGACATCGTCGCCTCCACCCCCACCCCGAGGTTTACTTATACAACGTCGTCGTCTTCACCACCGCCTCCGAGGTTTATTTATACGACGGGTGTTCCCGGTAACTTGTACCAGATCGACGCGAATAACCGTTGGTATTACTTCTCCGACGCGACCGGGAAGCGGCCGGCCATGGTGGCGCTGGTGGTGGCACTTGGCTGTGGAGCTTTGGATCTCATGA

mRNA sequence

ATGGCGCCTTGGGCTGCCATTTTTCTCTCCTTTTCTCTTCTCTTCCTCCTCATTCACCTCGCCGACGCTCAAACCTCCCCGTCGATATCAATCGGCCCGCAGGATCCCGACGCCGAAATAAAATGTGGATCATGCCCTTGCTCCAACCCATGTGTTCAAAAATTGCCACCACCATCACCGCCGCCGCCACCGAATTGTAACCCGACATCGTCGCCTCCACCCCCACCCCGAGGTTTACTTATACAACGTCGTCGTCTTCACCACCGCCTCCGAGGTTTATTTATACGACGGGTGTTCCCGGTAACTTGTACCAGATCGACGCGAATAACCGTTGGTATTACTTCTCCGACGCGACCGGGAAGCGGCCGGCCATGGTGGCGCTGGTGGTGGCACTTGGCTGTGGAGCTTTGGATCTCATGA

Coding sequence (CDS)

ATGGCGCCTTGGGCTGCCATTTTTCTCTCCTTTTCTCTTCTCTTCCTCCTCATTCACCTCGCCGACGCTCAAACCTCCCCGTCGATATCAATCGGCCCGCAGGATCCCGACGCCGAAATAAAATGTGGATCATGCCCTTGCTCCAACCCATGTGTTCAAAAATTGCCACCACCATCACCGCCGCCGCCACCGAATTGTAACCCGACATCGTCGCCTCCACCCCCACCCCGAGGTTTACTTATACAACGTCGTCGTCTTCACCACCGCCTCCGAGGTTTATTTATACGACGGGTGTTCCCGGTAACTTGTACCAGATCGACGCGAATAACCGTTGGTATTACTTCTCCGACGCGACCGGGAAGCGGCCGGCCATGGTGGCGCTGGTGGTGGCACTTGGCTGTGGAGCTTTGGATCTCATGA

Protein sequence

MAPWAAIFLSFSLLFLLIHLADAQTSPSISIGPQDPDAEIKCGSCPCSNPCVQKLPPPSPPPPPNCNPTSSPPPPPRGLLIQRRRLHHRLRGLFIRRVFPVTCTRSTRITVGITSPTRPGSGRPWWRWWWHLAVELWIS

Homology

[Close]

BLAST of Lag0030899 vs. NCBI nr
Match: XP_022984145.1 (probable pathogenesis-related protein ARB_02861 [Cucurbita maxima])

HSP 1 Score: 99.0 bits (245), Expect = 3.5e-17
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MAPWAAIFLSFSLLFLLIHLADAQTSPSISIGPQDPDAEIKCGSCPCSNPCVQKLPPPSP 60
          MAP AAI LS S LFL +HLA++Q  P   + PQDP++EIKCGSCPCSNPCV++ PPP P
Sbjct: 1  MAPSAAIPLSLSFLFLFLHLANSQ--PVSPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPP 60

Query: 61 PPPPNCNPTSSPPPPP 77
          PPPPNC P   PPPPP
Sbjct: 61 PPPPNCKPALPPPPPP 74

[Close]

BLAST of Lag0030899 vs. NCBI nr
Match: XP_023528316.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-16
Identity = 52/77 (67.53%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 1  MAPWAAIFLSFSLLFLLIHLADAQTSPSISIGPQDPDAEIKCGSCPCSNPCVQKL-PPPS 60
          MAP AAI LS S LFL +HLAD+Q  P   + PQDP++EIKCGSCPCSNPCV++  PPP 
Sbjct: 3  MAPSAAIPLSLSFLFLFLHLADSQ--PFSPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPP 62

Query: 61 PPPPPNCNPTSSPPPPP 77
          PPPPPNC P   PPPPP
Sbjct: 63 PPPPPNCKPALPPPPPP 77

[Close]

BLAST of Lag0030899 vs. NCBI nr
Match: KAE8653002.1 (hypothetical protein Csa_004575 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 5.0e-16
Identity = 55/83 (66.27%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MAPWAAIFLSFSLLFLLIHLADAQTSPSISIGPQDPDAEIKCGSCPCSNPCVQKL----- 60
          MAP+AAI LSFS L  L+ LA++QTS  I + PQ+PDAEIKCGSCPCSNPC+Q+L     
Sbjct: 3  MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSPPPP 62

Query: 61 PPPSPPPPPNCNPT-SSPPPPPR 78
          PPP PPPP  C PT SS PPPPR
Sbjct: 63 PPPPPPPPSPCTPTVSSRPPPPR 85

[Close]

BLAST of Lag0030899 vs. NCBI nr
Match: KAE8650628.1 (hypothetical protein Csa_011452 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 5.0e-16
Identity = 55/83 (66.27%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MAPWAAIFLSFSLLFLLIHLADAQTSPSISIGPQDPDAEIKCGSCPCSNPCVQKL----- 60
          MAP+AAI LSFS L  L+ LA++QTS  I + PQ+PDAEIKCGSCPCSNPC+Q+L     
Sbjct: 3  MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSPPPP 62

Query: 61 PPPSPPPPPNCNPT-SSPPPPPR 78
          PPP PPPP  C PT SS PPPPR
Sbjct: 63 PPPPPPPPSPCTPTVSSRPPPPR 85

[Close]

BLAST of Lag0030899 vs. NCBI nr
Match: XP_011651408.1 (leucine-rich repeat extensin-like protein 3 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 5.0e-16
Identity = 55/83 (66.27%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MAPWAAIFLSFSLLFLLIHLADAQTSPSISIGPQDPDAEIKCGSCPCSNPCVQKL----- 60
          MAP+AAI LSFS L  L+ LA++QTS  I + PQ+PDAEIKCGSCPCSNPC+Q+L     
Sbjct: 3  MAPYAAILLSFSFLSHLLLLANSQTSSPILVDPQNPDAEIKCGSCPCSNPCIQQLSPPPP 62

Query: 61 PPPSPPPPPNCNPT-SSPPPPPR 78
          PPP PPPP  C PT SS PPPPR
Sbjct: 63 PPPPPPPPSPCTPTVSSRPPPPR 85

The following BLAST results are available for this feature:

BLAST of Lag0030899 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984145.1	3.5e-17	67.11	probable pathogenesis-related protein ARB_02861 [Cucurbita maxima]	[more]
XP_023528316.1	2.2e-16	67.53	leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]	[more]
KAE8653002.1	5.0e-16	66.27	hypothetical protein Csa_004575 [Cucumis sativus]	[more]
KAE8650628.1	5.0e-16	66.27	hypothetical protein Csa_011452 [Cucumis sativus]	[more]
XP_011651408.1	5.0e-16	66.27	leucine-rich repeat extensin-like protein 3 [Cucumis sativus]	[more]

BLAST of Lag0030899 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0030899.1	Lag0030899.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane