Lag0030850 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0030850
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	HMG-Y-related protein A-like
Location	chr11: 2084828 .. 2086274 (-)
RNA-Seq Expression	Lag0030850
Synteny	Lag0030850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGGTACATTCGTTTCCTCTTTTATTTCTTGCAATTTCAGATACCCATCAAGGAAAAATCATGATGGGTTCTGTTTTTTGCTCTTAATTCTTTATGGGTTTCGTCCCACTGCCTCTAATCTGTTGAGTCTCTTCTGGGTTTGTCTGTTGATTTGTTCTTGAATTAGGGTTCCTTGTGATTTGTTTCTGATTTTGTGTTTTGTTTAGTGAATTTGGTGTTTTTTTGTTTGGTTGATTTGTTGAACAGGGGAAATTCCTTCTCTCCTTGTGGTTTCTTGCATTTCCTTCTCGAATCTGAGTGTTTCCTTTTCGATATGATTTCGATGGTTTTGTAATTTTTGTTTTTGTTTCAAGAGACACTAGAGTTTGGTTGATTCAGCTGGGATTCCTCATTTCTTTAGTTCCTGTTAGAATCTTCTTTGTTAGATGCGAGTTTTGAAGAGAGATGAATGTAGTTCTTGTTTACTCCAGTTTCTTTAATAATTTGTTTCCATTTAGAAATGGTTTTGAGTTTTGGATTTTGTTTGAAATGAGAAGAGATTTGAGATGAATGTGATTGAAACTTTTTGCTGGGATGTTGTTGAAAAATGAGAAGAGTATAGAAGTGTTGAAGATGTTAGATCTGTTGTTAACTGTGAGGTTTGGCAGAATCTTAAGTAAAAATATGGTTTGTAATTACATTTCATTTCAGATCTTTTTACTTCAAAATGATAACAAACAAAACAAGTTTATTTGAAATGTAGTTTGATTTGGTTTCTCTTAAAATGCTGGGAAAGCAGAGTCCTGATTGGTTGGATATTAAGTTTCTACTTAGATCTGCAAATCATTGAAACTGATAAAAGTGGATCATGAAAGGAAAATGTTGAATTGAAACATCATTTTTTATGGAAGTTTTTTAAATGTTGCAGATGATATTTAGGGCTATTGAAGCATTGAATAGTGACAATGGCTCAAACAAGTCCACAATATCAAAGTACATTGAATCAACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACGGCGCCTCCCCGGCGGGGGCGTGGTAGGCCTCCGAAACCGAAGGTGCCTCTACCCCCGGGTTCTGTTTTATCCCCACCGAAGCCGAGGGGTCGCCCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGAAGATGAAGGTATCTTCTGCGACCGGGAAACCAAGAGGACGACCAAGGAAATTTCCTCGGCCAGCAACCACGGTAGCTCCTCCCGCACCGAGCGGGAGGCCTAGAGGTCGACCTCCCAAGGTGAAGGCTCCATTGACTGAAGTTAGCGTTCAACAATAG

mRNA sequence

ATGGCGACTGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCATTGAATAGTGACAATGGCTCAAACAAGTCCACAATATCAAAGTACATTGAATCAACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACGGCGCCTCCCCGGCGGGGGCGTGGTAGGCCTCCGAAACCGAAGGTGCCTCTACCCCCGGGTTCTGTTTTATCCCCACCGAAGCCGAGGGGTCGCCCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGAAGATGAAGGTATCTTCTGCGACCGGGAAACCAAGAGGACGACCAAGGAAATTTCCTCGGCCAGCAACCACGGTAGCTCCTCCCGCACCGAGCGGGAGGCCTAGAGGTCGACCTCCCAAGGTGAAGGCTCCATTGACTGAAGTTAGCGTTCAACAATAG

Coding sequence (CDS)

ATGGCGACTGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTGAGATGATATTTAGGGCTATTGAAGCATTGAATAGTGACAATGGCTCAAACAAGTCCACAATATCAAAGTACATTGAATCAACATATGGGAACTTGCCAACTGGGCACTCATCTTTGCTCACACACCATTTGAACATGATGAAAGCCAGTGGGGAACTTGTGTTCTGGAAGAACAACTACATGAAGAGGGATCCCACGGCGCCTCCCCGGCGGGGGCGTGGTAGGCCTCCGAAACCGAAGGTGCCTCTACCCCCGGGTTCTGTTTTATCCCCACCGAAGCCGAGGGGTCGCCCGCCTAAGGACCCCAATGCACCTCCAAAACCACCAAAGCCAGTGAAGATGAAGGTATCTTCTGCGACCGGGAAACCAAGAGGACGACCAAGGAAATTTCCTCGGCCAGCAACCACGGTAGCTCCTCCCGCACCGAGCGGGAGGCCTAGAGGTCGACCTCCCAAGGTGAAGGCTCCATTGACTGAAGTTAGCGTTCAACAATAG

Protein sequence

MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGSVLSPPKPRGRPPKDPNAPPKPPKPVKMKVSSATGKPRGRPRKFPRPATTVAPPAPSGRPRGRPPKVKAPLTEVSVQQ

Homology

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BLAST of Lag0030850 vs. NCBI nr
Match: XP_022935331.1 (HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related protein A-like [Cucurbita maxima] >XP_023526335.1 HMG-Y-related protein A-like [Cucurbita pepo subsp. pepo] >KAG6581188.1 hypothetical protein SDJN03_21190, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017928.1 hypothetical protein SDJN02_19794 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 329.7 bits (844), Expect = 1.6e-86
Identity = 172/183 (93.99%), Postives = 173/183 (94.54%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MA EEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MAAEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPK KVPLPPGSVLSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKLKVPLPPGSVLSPPKPRGRPPKDPNA 120

Query: 121 ---PPKPPKPVKMKVSSATGKPRGRPRKFPRPATTVAPPAPSGRPRGRPPKVKAPLTEVS 180
              PPKPPKPV+MKVSS TGKPRGRPRKFPRPAT  APP PSGRPRGRPPKVK PLTEVS
Sbjct: 121 PPKPPKPPKPVQMKVSSGTGKPRGRPRKFPRPATPPAPPVPSGRPRGRPPKVKGPLTEVS 180

[Close]

BLAST of Lag0030850 vs. NCBI nr
Match: XP_008456999.1 (PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa] >TYK23933.1 HMG-Y-related protein A-like [Cucumis melo var. makuwa])

HSP 1 Score: 322.4 bits (825), Expect = 2.5e-84
Identity = 166/180 (92.22%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  S +SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSAISPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVKMKVSSATGKPRGRPRKFPRPATTVAPPAPSGRPRGRPPKVKAPLTEVSVQQ 180
           PPKPPKPV+MKVSS TGKPRGRPRKFP+ ATT APPAPSGRPRGRPPKVKA LTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSATTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of Lag0030850 vs. NCBI nr
Match: XP_038878302.1 (HMG-Y-related protein A-like [Benincasa hispida])

HSP 1 Score: 319.7 bits (818), Expect = 1.6e-83
Identity = 165/180 (91.67%), Postives = 168/180 (93.33%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATEEVNKPPSLPPYPEMIFRAIEALNS+NGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSENGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPK PLPP SVLSPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKGPLPPSSVLSPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVKMKVSSATGKPRGRPRKFPRPATTVAPPAPSGRPRGRPPKVKAPLTEVSVQQ 180
           PPKPPKPV+MKVSS TGK RGRPRKFP   T  +PP PSGRPRGRPPKVK  LTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKARGRPRKFPLATTMPSPPTPSGRPRGRPPKVKTSLTEVSVQQ 180

[Close]

BLAST of Lag0030850 vs. NCBI nr
Match: XP_004145857.1 (HMG-Y-related protein A isoform X2 [Cucumis sativus])

HSP 1 Score: 319.3 bits (817), Expect = 2.1e-83
Identity = 165/180 (91.67%), Postives = 171/180 (95.00%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+EVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATQEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASG+LVFWKNNYMKRDPTAPPRRGRGRPPK K PLP  SV+S PKPRGRPPKDPNA
Sbjct: 61  NMMKASGDLVFWKNNYMKRDPTAPPRRGRGRPPKSKSPLPLSSVISSPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVKMKVSSATGKPRGRPRKFPRPATTVAPPAPSGRPRGRPPKVKAPLTEVSVQQ 180
           PPKPPKPV+MKVSS TGKPRGRPRKFP+ A+T APPAPSGRPRGRPPKVKA LTEVSVQQ
Sbjct: 121 PPKPPKPVQMKVSSGTGKPRGRPRKFPQSASTPAPPAPSGRPRGRPPKVKATLTEVSVQQ 180

[Close]

BLAST of Lag0030850 vs. NCBI nr
Match: XP_022143283.1 (HMG-Y-related protein A-like [Momordica charantia])

HSP 1 Score: 313.9 bits (803), Expect = 8.8e-82
Identity = 162/180 (90.00%), Postives = 164/180 (91.11%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT  VNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL
Sbjct: 1   MATGGVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGSVLSPPKPRGRPPKDPNA 120
           NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLP     SPPKPRGRPPKDPNA
Sbjct: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPSNVASSPPKPRGRPPKDPNA 120

Query: 121 PPKPPKPVKMKVSSATGKPRGRPRKFPRPATTVAPPAPSGRPRGRPPKVKAPLTEVSVQQ 180
           PP+PPKPV MKVSS TGKPRGRPRK  RP +  APPAPSGRPRGRPPK KAPLTEV VQQ
Sbjct: 121 PPQPPKPVTMKVSSGTGKPRGRPRKLARPTSITAPPAPSGRPRGRPPKAKAPLTEVGVQQ 180

[Close]

BLAST of Lag0030850 vs. ExPASy Swiss-Prot
Match: Q00423 (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 4.9e-59
Identity = 126/180 (70.00%), Postives = 142/180 (78.89%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MATEEVNKP SLPPYPEMI + +EALN  NGSNKS ISKYIE+TYG LP   +++L  HL
Sbjct: 1   MATEEVNKPQSLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELP--DATVLGSHL 60

Query: 61  NMMKASGELVFWKNNYMKRDPTAPPRRGRGRPPKPKVPLPPGSVLSPPKPRGRPPKDPNA 120
           N MK SGEL F +NNYMK DP APP+RGRGRPPKPK PLPPG+V+SPP+PRGRPPKDPNA
Sbjct: 61  NKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRGRPPKDPNA 120

Query: 121 PPKPPKPVKMKVSSATGKPRGRPRKFPRPATTVAPPA-PSGRPRGRPPKVKAPLTEVSVQ 180
           PPK P   K K +  +G+PRGRP+K PR     AP A  SGRPRGRPPKVK  LTEVSV+
Sbjct: 121 PPKSP---KAKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQLTEVSVE 175

[Close]

BLAST of Lag0030850 vs. ExPASy Swiss-Prot
Match: Q10370 (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.1e-46
Identity = 107/156 (68.59%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 25  ALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELVFWKNNYMKRDPTAP 84
           ALN  +GSNKS ISKYIE+TYG LP    ++L  HLN MK SGEL F +NNYMK DP AP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELP--DETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 85  PRRGRGRPPKPKVPLPPGSVLSPPKPRGRPPKDPNAPPKPPKPVKMKVSSATGKPRGRPR 144
           P+RGRGRPPKPKVPLPPG+V+SPP+PRGRPPKDPNAPPK P   K K + ATG+PRGRP+
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKDPNAPPKSP---KAKATPATGRPRGRPK 120

Query: 145 KFPRPATTVAPPAPS-GRPRGRPPKVKAPLTEVSVQ 180
           K  R     +P A S GRPRGRPPKVK  LTEVSV+
Sbjct: 121 KVARSPAVPSPTAVSTGRPRGRPPKVKPQLTEVSVE 151

[Close]

BLAST of Lag0030850 vs. ExPASy Swiss-Prot
Match: Q43386 (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.5e-34
Identity = 94/178 (52.81%), Postives = 117/178 (65.73%), Query Frame = 0


Query: 11  SLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHLNMMKASGELV 70
           SLPPYP+MI  AIE+LN  NG NK+TI+K+IEST   LP  H +LL++HLN MK +G+L+
Sbjct: 22  SLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLI 81

Query: 71  FWKNNYMKRDPTAPPRRGRGRPPKPK---------VPLPPGSVLS--PPKPRGRPPKDPN 130
             KNNYMK DP APP+RGRGRPPK K           +   +V+S  PP+ RGRPPK   
Sbjct: 82  MVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK--- 141

Query: 131 APPKPPKPVKMKVSSATGKPRGRPRKFPR-PATTVAPPAPSG------RPRGRPPKVK 171
            P  P +P + KV + +G+PRGRP K PR  + TVA P P+       R RGRPPKVK
Sbjct: 142 -PKDPSEPPQEKVITGSGRPRGRPPKRPRTDSETVAAPEPAAQATGERRGRGRPPKVK 195

[Close]

BLAST of Lag0030850 vs. ExPASy Swiss-Prot
Match: Q9FYS5 (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-32
Identity = 95/186 (51.08%), Postives = 110/186 (59.14%), Query Frame = 0


Query: 1   MATEEVNKPPSLPPYPEMIFRAIEALNSDNGSNKSTISKYIESTYGNLPTGHSSLLTHHL 60
           MAT+E  KP  +PPYPEMI  AIE L+  +GSNKS ISKYIE  YG+LP  H+SLLT HL
Sbjct: 1   MATDEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHL 60

Query: 61  NMMKASGELVFWKNNYMKRD-PTAPPRRGRGRPPKPKVPLPPGSVLSPPKPRGRPPKDPN 120
             MK SGELVF KNNY +   P APP+RGRGRPPK + P  P      P   GR      
Sbjct: 61  ARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSSTGR---GRG 120

Query: 121 APPKPPKPVKMKVSSATG---KPRGRPRKFPRPATTVAP-----PAPSG-------RPRG 171
            PPK   P++  V  AT    KPRGRP K  +     +P     PAP+G       R RG
Sbjct: 121 RPPKAKSPLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGSTPGKRGRG 180

The following BLAST results are available for this feature:

BLAST of Lag0030850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935331.1	1.6e-86	93.99	HMG-Y-related protein A-like [Cucurbita moschata] >XP_022983645.1 HMG-Y-related ...	[more]
XP_008456999.1	2.5e-84	92.22	PREDICTED: HMG-Y-related protein A-like [Cucumis melo] >KAA0032765.1 HMG-Y-relat...	[more]
XP_038878302.1	1.6e-83	91.67	HMG-Y-related protein A-like [Benincasa hispida]	[more]
XP_004145857.1	2.1e-83	91.67	HMG-Y-related protein A isoform X2 [Cucumis sativus]	[more]
XP_022143283.1	8.8e-82	90.00	HMG-Y-related protein A-like [Momordica charantia]	[more]

BLAST of Lag0030850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00423	4.9e-59	70.00	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q10370	2.1e-46	68.59	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q43386	5.5e-34	52.81	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
Q9FYS5	1.3e-32	51.08	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 84..96 score: 58.24 coord: 126..145 score: 37.86 coord: 99..110 score: 33.33
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 86..96 score: 69.32 coord: 158..168 score: 68.56 coord: 106..117 score: 61.46
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 86..98 e-value: 58.0 score: 5.3 coord: 137..149 e-value: 10.0 score: 9.6 coord: 160..172 e-value: 2.4 score: 13.2 coord: 108..120 e-value: 0.79 score: 15.8
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 9..75 e-value: 2.5E-22 score: 90.2
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 13..73 e-value: 9.9E-10 score: 38.6
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 11..80 score: 21.777845
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 7..86 e-value: 6.9E-14 score: 53.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..128
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 1..175
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF103	HMG-Y-RELATED PROTEIN A	coord: 1..175
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 8..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0030850.1	Lag0030850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding