Lag0030837 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0030837
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	SSD domain-containing protein
Location	chr11: 1907491 .. 1910805 (+)
RNA-Seq Expression	Lag0030837
Synteny	Lag0030837

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTCACTATTGCTGCTTCCTTTTCATGTAAGTTTGATCGAAACTGTCTCTCTGTACCGTAATGAAATCTTGTTGAACTTTATTATTCATGCTTTCAATGTAACTTTGGGTGGAACTACTTTTCTTACCTTCCAGCAAAGGAAGGTCAATCTAACCTTCCACTGTACTCTCTTTCACTGGAAGTCCTCCATTTATTGGAATCTTCAACCTTGAATAATGAACAAGGGGTTAATCCCCAACTCTAGGAAGGTAAACTCCACACGAACAGACCCTTTATTTGATGTTGGGGTTATTATGAAAGATTCTAATTCTAAAGAAAATCTCGGAGAAAGATGGGTATAAAGTGATTGGGGAATTTTGTGTTGGCTAGATTTAACCCACCATGGACATTGCTTTCTTTGAGAACCAATGAAGTTATGATACTAGTAGAAATATTTACAGTGTTTTAAGCATTGTGTTTTGTATAACCACTGTTTGTAGTTTTGTATACTTTAAATCCATTTACTCTTGGTTGTTCTGTTTTGAATAATACTGTCAATCCATTTACTCTTCATGTAAGGCAATCTAGAAAGACACTATTCCAAGTTTCCAATTGTTCTATGCTAGTTGTCATATTTAAATATTTGTATCATGTTGTGTAATGTGTAATAGGCTGTCCAAAACCACCCATTCATATTACCCATGCTAGAAGGGGTAGGAGAAAGACCATTGATGGTTATTTGAGGAAGGATGGAAATGTAATTATGTGAGTGTAAGATTAAGCTGGGATTAGTTGAAATTCGTTTAGATGATTTGGACACAGAAATGGTGGGAAGAAACAGAGAAGGGATGGGAATTAGGAAGGTTTAGATTTGGTCTTTGAGGAGGCTTGTAGGCTCTTGGATATCCGGTAAGATTGTACACCATTGTTGTTATCAGTATCATGATTAACATCCATAGGCTCGTAATCAATTTCAACTCAATAGATTTATGCTGCATATTTTTTTGATGCAGTTTCATGTAGAATATTTTTCTTTGTTTCTGCTTGATAATGTAGTGTTAAACTCTTATTAATATTTTGTATACCTTTTTTTGTTAGAACTTTTTGCGTTTCTTGGTCAGAAAGTAGCCCTTGGTTTTCCTGGATCACCTTATGCCATAAACTTTAAGGTGAACACTTCAAATTCATCTCAAATGGAGCTTATGAATGTGTCTGTTTATTCATGGAATAGAACGCCTGAGGATTCATGGTTTGGAACTCTCTATGAGAATAATTCATCAACTTAATCTCTTTTTTTTTCTCCTCAAGAAGAATTTTCATTGGAACTAAACCTAGCTATTAGTTGTGATATCAAATGTCCAAGTCTAAATCAAGAAAAAAAAAAGAGGCAAACTTGGGTAAGGTACATTATATTCCTTAGCTCATTGATGATATATCAAATATCTTATTAGTTGGCCATTTTTATAAAATTAATGTGTTTGAAACTGAGTTGTTTCTTAAATTCTTTGATTATGTTTGAAAGTTTTATTTTGCCTCTCATCTTTGTTATTCTCTATATATATGGTTTGCTAGCCTAAAGAGAAGGGGGAGGGGTTGGTTCCTCCAAGCTGAAAGCTGTGCAATGTTGACAATTTTGTGACATGAAACTGTGAAGTTTTTTTTTTTTTTTTCCCTCTTGGTAATGCCTGCTTAAGCTGAAGAAAAGCTACAAAATTTAGGAGATTTTTAAGAACAGATTTGACTCCACTCTGTTTTTTATTCATCTAATTATGTTACTATATATACACTTGTGGTATCAAAACTTTGGCCTCATTTAAATATGTTCTCTCTCACTTCCTTTCTTTATCCAATTCTATTATATATCCTCTCTTTAGAGAAGAGAGGGATCTTTTCTTTAATGAATAAGAGAAGGAAGAAGACAAAAATGAAATGCTTTTTTTTTTTTTTCTTAACATGTTGCTTAGGTCGATATGTTTGATTTTGCTACTATTTTCACTTAATGTAGGTTGATTTTGTTGCTGTATTTTGGTTGTTTAAGAACTTTTATATTTGTCTCTTGCTTAAAGACTATGTGGTTTATATCTACTGAATCATTCACTTGATGTTATAGGCTATTGAGATGGTCAAGAAAACTCCTACTTACACAAATAGATTATGGGCTCTTGAACTTAAACGAAGTGGAGGAGCAAACAAAAGAAAGGTCACACGCAGTCAGATAAGTATGTAGTTTTTGTTGGTTAATTACCAAAATAATTAAGGAAAAAATAAATAGTTTGTTTGGTAGTTGAACATATGTAAACATCAATAGTTCGATTTCTTGTTTTTAGTCTTGAATTAAAGATGATTTAGAGAAAAATGAAATGGTAGTCGTGATGTTTGAAAAGTTGAGCAAAGATTAAGGGTGTCAGACTAGTCGATCCTCTTCTCTTTTCTTGTTCATTCTAATCGTTGGCTTACTTCACTTCAATGCCCATTTCACCTATGGGGTGAGTTTGTTTGGTGTTCTTTTTATATTGCAATTATTGTACTTGGGATTATTATTATTTTTTTTTTGAAAAGATGTTGGATAAACCTTGACAAACACCTTTTGATTTCAAAATTTCATTTTACTTGTAGGTATCAATACTATTTGCTTAATTGTACTGGATATGTGAGCCTGCACCGTGCTCTTGGATTGGTTCGCTTTAAGGCACAACGTTATAAAGATGCTACTCGTCAGGTTTGGTTTAGTTCGCTTTAAAATCGCTAGTTGTTTTTTGGTTGAATCTTCGATTGTTCTTCTATTGGAAACATGTATAGCTTGAGCATGCATATTTGTTTAGTAATTGTTGTTTCATTATGGTTTGGATTTTGGATTCCGGGTTCATATTTACTGTTGCGTTTGCATTTTACCCTAACTGAATGTTGGAGTTCAAGGGTTAAGTCAGAAGAATAGTAACATGGTGTGCTTGTCTTCTTTCGGTATGCATGCATTAATCTCACTAGTTCAATGAATAGTAATTTGGTGTGTTTGCCTCCTTCTTCTTTGTTTAGTAATTGTTGTTTCATTATGTTGTATTATACTGTGTTGAAAGATTTAGAATGGATTTAGGATTCAAATACTAAATTAGACCATTTTTTCCCTTGAGCATTTGCATTCCCTTGAGCATATGTCTTGGAGCTTTAGTTTTAGTTTAAGGATTTGATTGGAGATGTGTGTCGATTGTATTTTACTAACGTTTTTGCTTTGTATAAGGTTTGAAATTCATCTTATTAAGCGAGAACTGTTGCAGATGATGAAATGGATATTCTCGAAAAGGAGCTCGAAGAGGAACTTGGCCGGAAGAGCGTAG

mRNA sequence

ATGGTCTCACTATTGCTGCTTCCTTTTCATAAAGTAGCCCTTGGTTTTCCTGGATCACCTTATGCCATAAACTTTAAGGTGAACACTTCAAATTCATCTCAAATGGAGCTTATGAATGTGTCTGTTTATTCATGGAATAGAACGCCTGAGGATTCATGGTATCAATACTATTTGCTTAATTGTACTGGATATGTGAGCCTGCACCGTGCTCTTGGATTGGTTCGCTTTAAGGCACAACGTTATAAAGATGCTACTCGTCAGATGATGAAATGGATATTCTCGAAAAGGAGCTCGAAGAGGAACTTGGCCGGAAGAGCGTAG

Coding sequence (CDS)

ATGGTCTCACTATTGCTGCTTCCTTTTCATAAAGTAGCCCTTGGTTTTCCTGGATCACCTTATGCCATAAACTTTAAGGTGAACACTTCAAATTCATCTCAAATGGAGCTTATGAATGTGTCTGTTTATTCATGGAATAGAACGCCTGAGGATTCATGGTATCAATACTATTTGCTTAATTGTACTGGATATGTGAGCCTGCACCGTGCTCTTGGATTGGTTCGCTTTAAGGCACAACGTTATAAAGATGCTACTCGTCAGATGATGAAATGGATATTCTCGAAAAGGAGCTCGAAGAGGAACTTGGCCGGAAGAGCGTAG

Protein sequence

MVSLLLLPFHKVALGFPGSPYAINFKVNTSNSSQMELMNVSVYSWNRTPEDSWYQYYLLNCTGYVSLHRALGLVRFKAQRYKDATRQMMKWIFSKRSSKRNLAGRA

Homology

[Close]

BLAST of Lag0030837 vs. NCBI nr
Match: XP_011656918.1 (NPC intracellular cholesterol transporter 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 32/38 (84.21%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 11  KVALGFPGSPYAINFKVNTSNSSQMELMNVSVYSWNRT 49
           KVA GFPGSPYAINFKVN S SSQMELMNVSVYS   T
Sbjct: 216 KVAPGFPGSPYAINFKVNPSKSSQMELMNVSVYSCGDT 253

[Close]

BLAST of Lag0030837 vs. NCBI nr
Match: XP_011656920.1 (NPC intracellular cholesterol transporter 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 32/38 (84.21%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 11  KVALGFPGSPYAINFKVNTSNSSQMELMNVSVYSWNRT 49
           KVA GFPGSPYAINFKVN S SSQMELMNVSVYS   T
Sbjct: 216 KVAPGFPGSPYAINFKVNPSKSSQMELMNVSVYSCGDT 253

[Close]

BLAST of Lag0030837 vs. NCBI nr
Match: XP_038878641.1 (NPC intracellular cholesterol transporter 1-like [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 32/38 (84.21%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 11  KVALGFPGSPYAINFKVNTSNSSQMELMNVSVYSWNRT 49
           KVA GFPGSPYAINFKVN S SSQMELMNVSVYS   T
Sbjct: 216 KVAPGFPGSPYAINFKVNPSKSSQMELMNVSVYSCGDT 253

[Close]

BLAST of Lag0030837 vs. NCBI nr
Match: KAA0047847.1 (Niemann-Pick C1 protein-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-06
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 11  KVALGFPGSPYAINFKVNTSNSSQMELMNVSVYSWNRT 49
           KVA GFPGSPY+INFKVN S SSQMELMNVSVYS   T
Sbjct: 192 KVAPGFPGSPYSINFKVNPSKSSQMELMNVSVYSCGDT 229

[Close]

BLAST of Lag0030837 vs. NCBI nr
Match: XP_008448193.1 (PREDICTED: Niemann-Pick C1 protein-like isoform X1 [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-06
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 0


Query: 11  KVALGFPGSPYAINFKVNTSNSSQMELMNVSVYSWNRT 49
           KVA GFPGSPY+INFKVN S SSQMELMNVSVYS   T
Sbjct: 215 KVAPGFPGSPYSINFKVNPSKSSQMELMNVSVYSCGDT 252

The following BLAST results are available for this feature:

BLAST of Lag0030837 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656918.1	1.2e-06	84.21	NPC intracellular cholesterol transporter 1 isoform X1 [Cucumis sativus]	[more]
XP_011656920.1	1.2e-06	84.21	NPC intracellular cholesterol transporter 1 isoform X2 [Cucumis sativus]	[more]
XP_038878641.1	1.2e-06	84.21	NPC intracellular cholesterol transporter 1-like [Benincasa hispida]	[more]
KAA0047847.1	2.7e-06	81.58	Niemann-Pick C1 protein-like isoform X2 [Cucumis melo var. makuwa]	[more]
XP_008448193.1	2.7e-06	81.58	PREDICTED: Niemann-Pick C1 protein-like isoform X1 [Cucumis melo]	[more]

BLAST of Lag0030837 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0030837.1	Lag0030837.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006869	lipid transport
biological_process	GO:0048868	pollen tube development
biological_process	GO:0090153	regulation of sphingolipid biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005319	lipid transporter activity