Lag0030835 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0030835
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr11: 1888121 .. 1888652 (+)
RNA-Seq ExpressionLag0030835
SyntenyLag0030835
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATGCATTCATTGGAGGCAAATATGCAAACCACAGTGGCTCAGGGAGGGGGATGAAAATGGGGTTTTCTTGATGCGGTCTTTCAAGAAAAAGGAGGCCAACATATATGGAGATTATTCAATACTGATTAATGGGAGACCACGAGGTAAGATTATTCCATCGATACTGATTGATGCGGTTCTCTTGATTCTTGTTTTGGATTGTCTCAATCGTTTATTACATAATGATAATGGTACTACTTTGGGTAAACGACTAATCCCTTTGACGGATCTTCCTTGATGATCAACCATTTACAGTTTGCCGATGATATATTCTTGTTTCTACAATGGATCCTACAACATTAGTAAATCTCCCTGGTGTTAATGTTCCACAACTAGACATCGAAGGTTTGGCTATAAGCTTTGGCTGCAAAAATGGTTCCTGGTCATCTTCTTATTTGGGACTTCCGTTGGGTGGCAATCCAAAAACAGCAATGTTTTGGCAACTAATTGGGGAAACACTTCATCACAAGTTGCATCACTGGAAGTAG

mRNA sequence

ATGGAATGCATTCATTGGAGGCAAATATGCAAACCACAGTGGCTCAGGGAGGGGGATGAAAATGGGGTTTTCTTGATGCGGTCTTTCAAGAAAAAGGAGGCCAACATATATGGAGATTATTCAATACTGATTAATGGGAGACCACGAGTAAATCTCCCTGGTGTTAATGTTCCACAACTAGACATCGAAGGTTTGGCTATAAGCTTTGGCTGCAAAAATGGTTCCTGGTCATCTTCTTATTTGGGACTTCCGTTGGGTGGCAATCCAAAAACAGCAATGTTTTGGCAACTAATTGGGGAAACACTTCATCACAAGTTGCATCACTGGAAGTAG

Coding sequence (CDS)

ATGGAATGCATTCATTGGAGGCAAATATGCAAACCACAGTGGCTCAGGGAGGGGGATGAAAATGGGGTTTTCTTGATGCGGTCTTTCAAGAAAAAGGAGGCCAACATATATGGAGATTATTCAATACTGATTAATGGGAGACCACGAGTAAATCTCCCTGGTGTTAATGTTCCACAACTAGACATCGAAGGTTTGGCTATAAGCTTTGGCTGCAAAAATGGTTCCTGGTCATCTTCTTATTTGGGACTTCCGTTGGGTGGCAATCCAAAAACAGCAATGTTTTGGCAACTAATTGGGGAAACACTTCATCACAAGTTGCATCACTGGAAGTAG

Protein sequence

MECIHWRQICKPQWLREGDENGVFLMRSFKKKEANIYGDYSILINGRPRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK
Homology
[Close]
BLAST of Lag0030835 vs. NCBI nr
Match: XP_009335445.1 (PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri])

HSP 1 Score: 68.2 bits (165), Expect = 5.2e-08
Identity = 30/76 (39.47%), Postives = 45/76 (59.21%), Query Frame = 0 

Query: 35  NIYGDYSILINGRPRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMF 94
           N++   S L   + + ++ G+N     ++G+A S+GC+ GSW   YLGLPLGG PK  MF
Sbjct: 529 NLFCTISGLKINKAKCSMAGINSDCEKLKGMADSWGCEVGSWPIKYLGLPLGGRPKALMF 588

Query: 95  WQLIGETLHHKLHHWK 111
           W  + E +  +L  WK
Sbjct: 589 WDPVVEKMEKRLQSWK 604

[Close]
BLAST of Lag0030835 vs. NCBI nr
Match: CAN82685.1 (hypothetical protein VITISV_000485 [Vitis vinifera])

HSP 1 Score: 67.8 bits (164), Expect = 6.7e-08
Identity = 31/75 (41.33%), Postives = 41/75 (54.67%), Query Frame = 0 

Query: 36  IYGDYSILINGRPRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFW 95
           ++G  S L     +  + G+N  Q  +  LA  F C+   W  SYLGLPLGGNPKT  FW
Sbjct: 653 VFGQVSSLKINLEKSTISGINTKQELLSSLASVFDCRVSEWPLSYLGLPLGGNPKTIGFW 712

Query: 96  QLIGETLHHKLHHWK 111
            L+ E +  +L  WK
Sbjct: 713 DLVVERISRRLDGWK 727

[Close]
BLAST of Lag0030835 vs. NCBI nr
Match: CAN69126.1 (hypothetical protein VITISV_008195 [Vitis vinifera])

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 39/110 (35.45%), Postives = 53/110 (48.18%), Query Frame = 0 

Query: 15   LREGDENGVFLM---------RSFKKKEANIYGDYSILINGRPRVNLP-----GVNVPQL 74
            LR+GD    FL             K +E N+   + +  N R RVNL      G+N+ Q 
Sbjct: 1394 LRQGDPLSPFLFTIVADVLSRMLLKAEERNVLEGFRVGRN-RTRVNLDKSNIYGINIEQN 1453

Query: 75   DIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK 111
             +  LA+   CK   W   YLGLPLGGNPK + FW  + E +  +L  W+
Sbjct: 1454 HLSRLAVMLDCKASGWPILYLGLPLGGNPKASGFWDPVIERISRRLDGWQ 1502

[Close]
BLAST of Lag0030835 vs. NCBI nr
Match: CAN62051.1 (hypothetical protein VITISV_016641 [Vitis vinifera])

HSP 1 Score: 65.5 bits (158), Expect = 3.3e-07
Identity = 29/78 (37.18%), Postives = 43/78 (55.13%), Query Frame = 0 

Query: 40   YSILINGR-------PRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTA 99
            Y++L+NG         + N+ G+N+ Q  +  LA+   CK   W   YLGLPLGGNPK +
Sbjct: 1354 YAVLVNGNAKGWVNLDKSNIYGINIEQNHLSRLAVMLDCKASGWPILYLGLPLGGNPKAS 1413

Query: 100  MFWQLIGETLHHKLHHWK 111
             FW  + E +  +L  W+
Sbjct: 1414 GFWDPVIERISRRLDGWQ 1431

[Close]
BLAST of Lag0030835 vs. NCBI nr
Match: XP_038891595.1 (uncharacterized protein LOC120080986 [Benincasa hispida])

HSP 1 Score: 64.3 bits (155), Expect = 7.5e-07
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 0 

Query: 52  LPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK 111
           L G++V   + + L  SFG K      +YLGLPLGGNP    FWQL+ E + HKLH+WK
Sbjct: 18  LLGIHVLDSEFDWLVNSFGFKRDYEPFTYLGLPLGGNPNHVTFWQLVMERIQHKLHNWK 76

The following BLAST results are available for this feature:
BLAST of Lag0030835 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_009335445.15.2e-0839.47PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri][more]
CAN82685.16.7e-0841.33hypothetical protein VITISV_000485 [Vitis vinifera][more]
CAN69126.11.5e-0735.45hypothetical protein VITISV_008195 [Vitis vinifera][more]
CAN62051.13.3e-0737.18hypothetical protein VITISV_016641 [Vitis vinifera][more]
XP_038891595.17.5e-0749.15uncharacterized protein LOC120080986 [Benincasa hispida][more]
BLAST of Lag0030835 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0030835.1Lag0030835.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity