Lag0030821 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0030821
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	conserved peptide upstream open reading frame 9
Location	chr11: 1711471 .. 1713013 (-)
RNA-Seq Expression	Lag0030821
Synteny	Lag0030821

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTGCTATATAAGTTCTTCTACGATTTTGAAGACCTCACAATTAACGCAAACGCTCTGCGGCCTCTTGAATTCTCATCGGTTCTCTCTCTATTTCTCTCAATCGAATTTCGTTTTCTTGCAAGCTTTTTAGGGATTTTTCTGGTTTCGATCTCCGCCGCTAATTCTTTTCATCGGTAAGATTGTTGTTTGGTTTTGTTTATCTATCGATCGTGATCTCTTTTAGGGTTATCGTTTCTTTCTGTAATTCTAAACTTTGGGATTTTCTTTTTCCTGATTACGATTTGGTTTGAATAATAGGGTTTGATTGAAGAAGGTTGTGCGAAGGGTTTCTCGGTGTGTTGACTGTTGCACCGAACTTTTACATTTTGTATTTATTGGTATGTTCTCCTCTCTCTCTCGGGATGTGGTGTTTTTGTCTTTTGATGGTTGGTGATGTTGATAAAGATTCAATATCTGACTAGAGGCTATGATTTATTGGAATATAATTTGATTCTTCGCTTGTGTTTTTTGTATTTGTTTGTAAATAGCCCTAATGTTCTAGATTTCGTTTTGTACTCGTCTTCCGGGTTTTTTCATGGTTTCCATCCGTTTCGATATGTTGATGTTGATCCGAATGGACAATCGATTTCAGAAAATCTCAAAGAAAACCGTATTCGTTTTTATTGGTTTCTGGGGCAATGTTTTCTCTTTCTTCAACTTTTTTTTTGGGGGGGGCCGTTGATGGTGATTGCATGGCGAAGAAAACGAGGGCTACCGTAAAAAAGAAGGGACTACCTTTTTAGAATACGGAAAGAAGGGTTTTAGTCTTACTTTTATATAATGGAGTAATAATTGGAAGGAAATTATTTGATTTTTCTGGGTTCTGTTGTGGATTTTGCTTTAATTTGTTTGCTTTTACCAGAAAGCAGTATTTCATGATTGCAGATGTATCCTCTATATTGTTTTTATTTTTTTTAAAAAAAAACTTTTACTTTGCTGGGACAACGTTTTCTATGAAAACTATGTTTGTCCTTTGCCATGACTACTTGATTTTCTCTTTCGTTGTCTTTTGGTATTTTTGTATTTGTATTGTTCTTCATTTGGATTATCTTTTGATAGAGCGAGTTTTTATTTTTAAACCAACATATCTCCTTATGCTCCGTTGTAAACGAATCAGTTTTCAGCTTAGGTCTTGTGTGTATGTGTGTTTTTGTTTTACTGTATCGTCTTCTCTTTGAGGTGAGACTTCTCTGATCTCATTTTTATGTGTAATCTTTTTGCAGCGAATGATTTAATGGAGTCAAAAGGTGGTAAGAAGAAGTCTAGTAGTAGTAGTAGTAGTAAATCCCTTTTCTACGAAGCCCCCCTCGGATACAGCATTGAAGACGTCCGACCACACGGTGGAATCAAGAAGTTCAGATCTGCTGCTTACTCCAACGTATGTTCCAACTTTTTACACTGTCGTCTAAGTTATGTAAGTTTATCATCAGTGGGGTTTGGCTAATGACTAATCTCTTTTTTTTTTTTCCTTCTGCAGTGCGTTCGAAAGCCATCCTGA

mRNA sequence

ATGGTTTTGCTATATAAGTTCTTCTACGATTTTGAAGACCTCACAATTAACGCAAACGCTCTGCGGCCTCTTGAATTCTCATCGGTTCTCTCTCTATTTCTCTCAATCGAATTTCGTTTTCTTGCAAGCTTTTTAGGGATTTTTCTGGTTTCGATCTCCGCCGCTAATTCTTTTCATCGCCCTAATGTTCTAGATTTCGTTTTGTACTCGTCTTCCGGGTTTTTTCATGGTTTCCATCCGTTTCGATATGTTGATGTTGATCCGAATGGACAATCGATTTCAGAAAATCTCAAAGAAAACCCGAATGATTTAATGGAGTCAAAAGGTGGTAAGAAGAAGTCTAGTAGTAGTAGTAGTAGTAAATCCCTTTTCTACGAAGCCCCCCTCGGATACAGCATTGAAGACGTCCGACCACACGGTGGAATCAAGAAGTTCAGATCTGCTGCTTACTCCAACTGCGTTCGAAAGCCATCCTGA

Coding sequence (CDS)

ATGGTTTTGCTATATAAGTTCTTCTACGATTTTGAAGACCTCACAATTAACGCAAACGCTCTGCGGCCTCTTGAATTCTCATCGGTTCTCTCTCTATTTCTCTCAATCGAATTTCGTTTTCTTGCAAGCTTTTTAGGGATTTTTCTGGTTTCGATCTCCGCCGCTAATTCTTTTCATCGCCCTAATGTTCTAGATTTCGTTTTGTACTCGTCTTCCGGGTTTTTTCATGGTTTCCATCCGTTTCGATATGTTGATGTTGATCCGAATGGACAATCGATTTCAGAAAATCTCAAAGAAAACCCGAATGATTTAATGGAGTCAAAAGGTGGTAAGAAGAAGTCTAGTAGTAGTAGTAGTAGTAAATCCCTTTTCTACGAAGCCCCCCTCGGATACAGCATTGAAGACGTCCGACCACACGGTGGAATCAAGAAGTTCAGATCTGCTGCTTACTCCAACTGCGTTCGAAAGCCATCCTGA

Protein sequence

MVLLYKFFYDFEDLTINANALRPLEFSSVLSLFLSIEFRFLASFLGIFLVSISAANSFHRPNVLDFVLYSSSGFFHGFHPFRYVDVDPNGQSISENLKENPNDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS

Homology

[Close]

BLAST of Lag0030821 vs. NCBI nr
Match: KAG7017910.1 (hypothetical protein SDJN02_19776, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.9 bits (294), Expect = 8.2e-23
Identity = 79/132 (59.85%), Postives = 86/132 (65.15%), Query Frame = 0


Query: 30  LSLFLSIEFRFLASFLGIFLVSISAANSFHRPNVLDFVLYSSSGFFHGFHPFRYVDVDPN 89
           LS F+ +  RFLA  LGIFLVS  +A+SF+R        Y   GF               
Sbjct: 45  LSNFVVLGLRFLAQGLGIFLVSFFSADSFNR--------YEGKGFL-------------- 104

Query: 90  GQSISENLKE---NPNDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFR 149
           G  +  +L       NDLMESKGGKKK SSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFR
Sbjct: 105 GVKLFPDLLHFVFIANDLMESKGGKKK-SSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFR 153

Query: 150 SAAYSNCVRKPS 159
           SAAYSNCVRKPS
Sbjct: 165 SAAYSNCVRKPS 153

[Close]

BLAST of Lag0030821 vs. NCBI nr
Match: KAE8650573.1 (hypothetical protein Csa_010068 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 102 NDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 159
           NDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS
Sbjct: 11  NDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 67

[Close]

BLAST of Lag0030821 vs. NCBI nr
Match: KAG6607040.1 (Uridine kinase-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.0 bits (271), Expect = 3.8e-20
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 98  KENPNDLMESKGGKKK-SSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRK 157
           K   NDLMESKGGKKK SSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRK
Sbjct: 541 KVRTNDLMESKGGKKKSSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRK 600

Query: 158 PS 159
           PS
Sbjct: 601 PS 602

[Close]

BLAST of Lag0030821 vs. NCBI nr
Match: TKY69456.1 (S-adenosyl-l-methionine decarboxylase leader peptide [Spatholobus suberectus])

HSP 1 Score: 107.8 bits (268), Expect = 8.4e-20
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 102 NDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 159
           N+LMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRP+GGIKKFRSAAYSNC RKPS
Sbjct: 39  NELMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPNGGIKKFRSAAYSNCARKPS 95

[Close]

BLAST of Lag0030821 vs. NCBI nr
Match: KAG6581173.1 (hypothetical protein SDJN03_21175, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.8 bits (268), Expect = 8.4e-20
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0


Query: 102 NDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 159
           NDLMESKGGKKK SSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS
Sbjct: 68  NDLMESKGGKKK-SSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 123

The following BLAST results are available for this feature:

BLAST of Lag0030821 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7017910.1	8.2e-23	59.85	hypothetical protein SDJN02_19776, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8650573.1	1.5e-21	100.00	hypothetical protein Csa_010068 [Cucumis sativus]	[more]
KAG6607040.1	3.8e-20	93.55	Uridine kinase-like protein 2, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
TKY69456.1	8.4e-20	94.74	S-adenosyl-l-methionine decarboxylase leader peptide [Spatholobus suberectus]	[more]
KAG6581173.1	8.4e-20	98.25	hypothetical protein SDJN03_21175, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0030821 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012511	S-adenosyl-l-methionine decarboxylase leader peptide	PFAM	PF08132	AdoMetDC_leader	coord: 105..158 e-value: 6.0E-33 score: 112.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..121
None	No IPR available	PANTHER	PTHR35727	BNAA05G33520D PROTEIN	coord: 89..158
None	No IPR available	PANTHER	PTHR35727:SF7	SUBFAMILY NOT NAMED	coord: 89..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0030821.1	Lag0030821.1	mRNA