Lag0030785 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0030785
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Succinate dehydrogenase assembly factor 4, mitochondrial
Location	chr11: 1354236 .. 1354574 (-)
RNA-Seq Expression	Lag0030785
Synteny	Lag0030785

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGCAATCTCCGCCGTCTATTCTCGTCGCCGCCGCCGAGCATCTCCGCCCTACCGACGGTGAGTCGCGTCGCTTCCGTCTCGCTGAGCCGACTCCTCAGCTCCTCGGCGAATCAACAGCCTTCTCGATCGGAGCGAGGCGTTGCCAGCGAGGAACAACGAGAGGCTGGAAATGAAATTTCGCCGAATCAACAAGAGGCTGCTGGAGAGGATCGAGACGGTGAAGATGAAGGAGCTGATGTGAATGAAGCGACCGGTGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAACGGTCGGTGCTACGATTTTTGA

mRNA sequence

ATGTCGAGCAATCTCCGCCGTCTATTCTCGTCGCCGCCGCCGAGCATCTCCGCCCTACCGACGGTGAGTCGCGTCGCTTCCGTCTCGCTGAGCCGACTCCTCAGCTCCTCGGCGAATCAACAGCCTTCTCGATCGGAGCGAGGCGTTGCCAGCGAGGAACAACGAGAGGCTGGAAATGAAATTTCGCCGAATCAACAAGAGGCTGCTGGAGAGGATCGAGACGGTGAAGATGAAGGAGCTGATGTGAATGAAGCGACCGGTGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAACGGTCGGTGCTACGATTTTTGA

Coding sequence (CDS)

ATGTCGAGCAATCTCCGCCGTCTATTCTCGTCGCCGCCGCCGAGCATCTCCGCCCTACCGACGGTGAGTCGCGTCGCTTCCGTCTCGCTGAGCCGACTCCTCAGCTCCTCGGCGAATCAACAGCCTTCTCGATCGGAGCGAGGCGTTGCCAGCGAGGAACAACGAGAGGCTGGAAATGAAATTTCGCCGAATCAACAAGAGGCTGCTGGAGAGGATCGAGACGGTGAAGATGAAGGAGCTGATGTGAATGAAGCGACCGGTGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAACGGTCGGTGCTACGATTTTTGA

Protein sequence

MSSNLRRLFSSPPPSISALPTVSRVASVSLSRLLSSSANQQPSRSERGVASEEQREAGNEISPNQQEAAGEDRDGEDEGADVNEATGEVGGPKGPEPTRYGDWERNGRCYDF

Homology

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BLAST of Lag0030785 vs. NCBI nr
Match: XP_022995844.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima])

HSP 1 Score: 158.7 bits (400), Expect = 3.0e-35
Identity = 87/112 (77.68%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MSSNLRRLFSSPPPSISALPTVSRVASVSLSRLLSSSANQQPSRSERGVASEEQREAGNE 60
           MSSNL RLFS  PPS++AL  V+RV S S+SRL+SSSANQQPSR E+GV  EEQREAG  
Sbjct: 1   MSSNLTRLFS--PPSLTALSAVNRVTSTSVSRLVSSSANQQPSRLEQGVPGEEQREAGKG 60

Query: 61  ISPNQQEAAGEDRDGEDEGADVNEATGEVGGPKGPEPTRYGDWERNGRCYDF 113
             P+Q EAAG+DRD EDEGADVN+ATGEVGGPKGPEPTRYGDWERNGRCYDF
Sbjct: 61  SLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

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BLAST of Lag0030785 vs. NCBI nr
Match: XP_022957978.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata])

HSP 1 Score: 158.3 bits (399), Expect = 3.9e-35
Identity = 86/112 (76.79%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MSSNLRRLFSSPPPSISALPTVSRVASVSLSRLLSSSANQQPSRSERGVASEEQREAGNE 60
           MSSNL RLFS  PPS++AL  V+R  S+S+SRL+SSSANQQPSR E+GV  EEQREAG  
Sbjct: 1   MSSNLTRLFS--PPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKG 60

Query: 61  ISPNQQEAAGEDRDGEDEGADVNEATGEVGGPKGPEPTRYGDWERNGRCYDF 113
             P+Q EAAG+DRD EDEGADVN+ATGEVGGPKGPEPTRYGDWERNGRCYDF
Sbjct: 61  SLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

[Close]

BLAST of Lag0030785 vs. NCBI nr
Match: XP_023532848.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.1 bits (396), Expect = 8.6e-35
Identity = 85/112 (75.89%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MSSNLRRLFSSPPPSISALPTVSRVASVSLSRLLSSSANQQPSRSERGVASEEQREAGNE 60
           MSSNL RLFS  PPS+++L  V+R  S+S+SRL+SSSANQQPSR E+GV  EEQREAG  
Sbjct: 1   MSSNLTRLFS--PPSLTSLSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKG 60

Query: 61  ISPNQQEAAGEDRDGEDEGADVNEATGEVGGPKGPEPTRYGDWERNGRCYDF 113
             P+Q EAAG+DRD EDEGADVN+ATGEVGGPKGPEPTRYGDWERNGRCYDF
Sbjct: 61  SLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

[Close]

BLAST of Lag0030785 vs. NCBI nr
Match: KAG6605777.1 (Succinate dehydrogenase assembly factor 4, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035745.1 Succinate dehydrogenase assembly factor 4, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.1 bits (396), Expect = 8.6e-35
Identity = 85/112 (75.89%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MSSNLRRLFSSPPPSISALPTVSRVASVSLSRLLSSSANQQPSRSERGVASEEQREAGNE 60
           MSSNL RLFS  PPS++AL  V+R  S+S+SRL+SSSANQQPSR E+GV  +EQREAG  
Sbjct: 1   MSSNLTRLFS--PPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGDEQREAGKG 60

Query: 61  ISPNQQEAAGEDRDGEDEGADVNEATGEVGGPKGPEPTRYGDWERNGRCYDF 113
             P+Q EAAG+DRD EDEGADVN+ATGEVGGPKGPEPTRYGDWERNGRCYDF
Sbjct: 61  SLPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

[Close]

BLAST of Lag0030785 vs. NCBI nr
Match: KGN49871.1 (hypothetical protein Csa_000062 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 2.0e-31
Identity = 80/112 (71.43%), Postives = 92/112 (82.14%), Query Frame = 0


Query: 1   MSSNLRRLFSSPPPSISALPTVSRVASVSLSRLLSSSANQQPSRSERGVASEEQREAGNE 60
           MSSNL RLFSS PP++SALP VSR+   SLSR +SSS+NQQPSR E+GV+SEEQREAG  
Sbjct: 1   MSSNLSRLFSS-PPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKG 60

Query: 61  ISPNQQEAAGEDRDGEDEGADVNEATGEVGGPKGPEPTRYGDWERNGRCYDF 113
            SPN+ EAAG+DR G+DEG D  + T E+GGPKGPEPTRYGDWER GRC DF
Sbjct: 61  SSPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 111

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BLAST of Lag0030785 vs. ExPASy Swiss-Prot
Match: Q5VUM1 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens OX=9606 GN=SDHAF4 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-08
Identity = 25/32 (78.12%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 81  DVNEATGEVGGPKGPEPTRYGDWERNGRCYDF 113
           DVN  T E GGP+GPEPTRYGDWER GRC DF
Sbjct: 77  DVNPVTKEKGGPRGPEPTRYGDWERKGRCIDF 108

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BLAST of Lag0030785 vs. ExPASy Swiss-Prot
Match: Q8BTE0 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Mus musculus OX=10090 GN=Sdhaf4 PE=3 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 9.3e-08
Identity = 31/53 (58.49%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 60  EISPNQQEAAGEDRDGEDEGADVNEATGEVGGPKGPEPTRYGDWERNGRCYDF 113
           E SP ++E   +  D      DVN  T E GGPKGPEPTRYGDWER GRC DF
Sbjct: 58  EDSPEEREPLQKFPD------DVNPVTKEKGGPKGPEPTRYGDWERKGRCIDF 104

[Close]

BLAST of Lag0030785 vs. ExPASy Swiss-Prot
Match: Q9VLU6 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogaster OX=7227 GN=Sirup PE=3 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 7.9e-07
Identity = 23/30 (76.67%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 83  NEATGEVGGPKGPEPTRYGDWERNGRCYDF 113
           N  TGE+GGP GPEPTRYGDWER GR  DF
Sbjct: 89  NPYTGEIGGPAGPEPTRYGDWERKGRVSDF 118

The following BLAST results are available for this feature:

BLAST of Lag0030785 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022995844.1	3.0e-35	77.68	succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima]	[more]
XP_022957978.1	3.9e-35	76.79	succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata]	[more]
XP_023532848.1	8.6e-35	75.89	succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. ...	[more]
KAG6605777.1	8.6e-35	75.89	Succinate dehydrogenase assembly factor 4, mitochondrial, partial [Cucurbita arg...	[more]
KGN49871.1	2.0e-31	71.43	hypothetical protein Csa_000062 [Cucumis sativus]	[more]

BLAST of Lag0030785 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5VUM1	2.5e-08	78.13	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens OX=9606...	[more]
Q8BTE0	9.3e-08	58.49	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Mus musculus OX=1009...	[more]
Q9VLU6	7.9e-07	76.67	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogas...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012875	Succinate dehydrogenase assembly factor 4	PFAM	PF07896	DUF1674	coord: 76..112 e-value: 1.9E-17 score: 63.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..112
None	No IPR available	PANTHER	PTHR28524	SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 4, MITOCHONDRIAL	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0030785.1	Lag0030785.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034553	mitochondrial respiratory chain complex II assembly
cellular_component	GO:0005739	mitochondrion