Lag0030773 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0030773
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptiontranscription factor TRY
Locationchr11: 1235836 .. 1236385 (-)
RNA-Seq ExpressionLag0030773
SyntenyLag0030773
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAATCATCGTCACCAGAAACAAGCTAAAATCACTCCACTAGACTCTGAAGGTTTCTTTCATCAACTTGATTTTCTATTTTCCATGTCCAATTACTCATCCTGAAGTTGGTCTCTCTCTTCTACATTATTCTCTCACTTTTGGATGATATTTCAAGTCCTACTTTCCTTTTTTGAAATTTGTGACTTATTGTCTCTAACAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCATAAGCTGATTGGAGATAGGTGAGTCTGAGTTTAAAGCAACCCAGATTTACAGAATTCTCCCAGCTTTTCCTCAACAAGAATGGAGAAAGATTCTTCCCTTTTTTCTCCTTCATTGCTTTCCAAGTACCTCTAGTATTTGAGTTTCTAAGAAAATGGCTTTTCATTTCAGGTGGGATCTGATAGCAGGCAGAATTCCGGGGCGTAAACCAGAAGAAATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGCAGAGAGAAGAAGGGGATGA

mRNA sequence

ATGGACAATCATCGTCACCAGAAACAAGCTAAAATCACTCCACTAGACTCTGAAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCATAAGCTGATTGGAGATAGGTGGGATCTGATAGCAGGCAGAATTCCGGGGCGTAAACCAGAAGAAATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGCAGAGAGAAGAAGGGGATGA

Coding sequence (CDS)

ATGGACAATCATCGTCACCAGAAACAAGCTAAAATCACTCCACTAGACTCTGAAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCATAAGCTGATTGGAGATAGGTGGGATCTGATAGCAGGCAGAATTCCGGGGCGTAAACCAGAAGAAATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGCAGAGAGAAGAAGGGGATGA

Protein sequence

MDNHRHQKQAKITPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFAERRRG
Homology
[Close]
BLAST of Lag0030773 vs. NCBI nr
Match: XP_016898876.1 (PREDICTED: transcription factor TRY [Cucumis melo] >KAA0042563.1 transcription factor TRY [Cucumis melo var. makuwa] >TYK05967.1 transcription factor TRY [Cucumis melo var. makuwa])

HSP 1 Score: 171.0 bits (432), Expect = 4.2e-39
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0 

Query: 1  MDNHRHQKQAKITPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQKQAKI+PLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKQAKISPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFAERRRG 83
          PEEIERYWIMTHLEGF +RRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]
BLAST of Lag0030773 vs. NCBI nr
Match: XP_038875738.1 (transcription factor TRY [Benincasa hispida])

HSP 1 Score: 167.2 bits (422), Expect = 6.1e-38
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0 

Query: 1  MDNHRHQKQAKITPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQKQAKIT L+SEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKQAKITLLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFAERRRG 83
          PEEIERYWIMTHLEGF +RRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]
BLAST of Lag0030773 vs. NCBI nr
Match: XP_031742154.1 (transcription factor TRY [Cucumis sativus] >AET79925.1 R3 MYB transcription factor [Cucumis sativus] >KGN49883.1 hypothetical protein Csa_000375 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 6.1e-38
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 0 

Query: 1  MDNHRHQKQAKITPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQK AKI+PL+SEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFAERRRG 83
          PEEIERYWIMTHLEGF +RRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]
BLAST of Lag0030773 vs. NCBI nr
Match: XP_022159377.1 (transcription factor TRY-like isoform X2 [Momordica charantia])

HSP 1 Score: 165.6 bits (418), Expect = 1.8e-37
Identity = 78/81 (96.30%), Postives = 78/81 (96.30%), Query Frame = 0 

Query: 1  MDNHRHQKQAKITPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHR QKQ KITPLDSEEVSSTRWQ ITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRQQKQPKITPLDSEEVSSTRWQLITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFAERRR 82
          PEEIERYWIMTHLEGFAERRR
Sbjct: 61 PEEIERYWIMTHLEGFAERRR 81

[Close]
BLAST of Lag0030773 vs. NCBI nr
Match: XP_022996343.1 (transcription factor TRY-like [Cucurbita maxima] >KAG6605768.1 Transcription factor TRY, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165.2 bits (417), Expect = 2.3e-37
Identity = 77/82 (93.90%), Postives = 80/82 (97.56%), Query Frame = 0 

Query: 1  MDNHRHQKQAKITPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHR+Q+QAK TPL+SEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRNQQQAKTTPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFAERRRG 83
          PEEIERYWIMTHLEGFA RRRG
Sbjct: 61 PEEIERYWIMTHLEGFAVRRRG 82

[Close]
BLAST of Lag0030773 vs. ExPASy Swiss-Prot
Match: Q8GV05 (Transcription factor TRY OS=Arabidopsis thaliana OX=3702 GN=TRY PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.9e-27
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 0 

Query: 2  DNHRHQKQAKITPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +KQ KI   DSEEVSS  W+FI MT QEEDLI RM++L+GDRWDLIAGR+PGR+P
Sbjct: 5  DRRRRRKQHKIALHDSEEVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGRVPGRQP 64

Query: 62 EEIERYWIMTHLEGFAERRR 82
          EEIERYWIM + EGFA++RR
Sbjct: 65 EEIERYWIMRNSEGFADKRR 84

[Close]
BLAST of Lag0030773 vs. ExPASy Swiss-Prot
Match: O22059 (Transcription factor CPC OS=Arabidopsis thaliana OX=3702 GN=CPC PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.3e-22
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 0 

Query: 5  RHQKQAKITPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R ++Q+K     SEEVSS  W+ + M+ +EEDLI RM+KL+GDRW+LIAGRIPGR PEEI
Sbjct: 13 RRRRQSKAKASCSEEVSSIEWEAVKMSEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEI 72

Query: 65 ERYWIMTHLEGFAERRR 82
          ERYW+M H   FA RRR
Sbjct: 73 ERYWLMKHGVVFANRRR 89

[Close]
BLAST of Lag0030773 vs. ExPASy Swiss-Prot
Match: B3H4X8 (MYB-like transcription factor TCL2 OS=Arabidopsis thaliana OX=3702 GN=TCL2 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 3.2e-21
Identity = 45/77 (58.44%), Postives = 61/77 (79.22%), Query Frame = 0 

Query: 5  RHQKQAKITPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R +KQ+K T  D+ EV+S +W+FI MT QEEDLI RMH+L+GDRWDLIAGR+ GR+ ++I
Sbjct: 11 RSRKQSKFTLGDTAEVNSVKWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVVGREAKDI 70

Query: 65 ERYWIMTHLEGFAERRR 82
          ERYWIM + +  + +RR
Sbjct: 71 ERYWIMRNCDHCSHKRR 87

[Close]
BLAST of Lag0030773 vs. ExPASy Swiss-Prot
Match: Q84RD1 (MYB-like transcription factor ETC2 OS=Arabidopsis thaliana OX=3702 GN=ETC2 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-20
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 0 

Query: 8  KQAKIT--PLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIE 67
          +Q K T    DSEEVSS  W+FI+MT QEEDLI RM++L+G+RWDLIAGR+ GRK  EIE
Sbjct: 16 RQTKFTRSRYDSEEVSSIEWEFISMTEQEEDLISRMYRLVGNRWDLIAGRVVGRKANEIE 75

Query: 68 RYWIMTHLEGFAERRR 82
          RYWIM + + F+ +RR
Sbjct: 76 RYWIMRNSDYFSHKRR 91

[Close]
BLAST of Lag0030773 vs. ExPASy Swiss-Prot
Match: Q9M157 (MYB-like transcription factor ETC3 OS=Arabidopsis thaliana OX=3702 GN=ETC3 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.8e-20
Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 0 

Query: 1  MDNHRHQKQAK---ITPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIP 60
          MDNHR  KQ K   I    SEEVSS  W+ + M+ +EEDL+ RMHKL+GDRW+LIAGRIP
Sbjct: 1  MDNHRRTKQPKTNSIVTSSSEEVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWELIAGRIP 60

Query: 61 GRKPEEIERYWIM 71
          GR   EIER+W+M
Sbjct: 61 GRTAGEIERFWVM 73

The following BLAST results are available for this feature:
BLAST of Lag0030773 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016898876.14.2e-3996.34PREDICTED: transcription factor TRY [Cucumis melo] >KAA0042563.1 transcription f... [more]
XP_038875738.16.1e-3895.12transcription factor TRY [Benincasa hispida][more]
XP_031742154.16.1e-3893.90transcription factor TRY [Cucumis sativus] >AET79925.1 R3 MYB transcription fact... [more]
XP_022159377.11.8e-3796.30transcription factor TRY-like isoform X2 [Momordica charantia][more]
XP_022996343.12.3e-3793.90transcription factor TRY-like [Cucurbita maxima] >KAG6605768.1 Transcription fac... [more]
BLAST of Lag0030773 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8GV052.9e-2770.00Transcription factor TRY OS=Arabidopsis thaliana OX=3702 GN=TRY PE=1 SV=1[more]
O220598.3e-2262.34Transcription factor CPC OS=Arabidopsis thaliana OX=3702 GN=CPC PE=1 SV=1[more]
B3H4X83.2e-2158.44MYB-like transcription factor TCL2 OS=Arabidopsis thaliana OX=3702 GN=TCL2 PE=1 ... [more]
Q84RD11.6e-2061.84MYB-like transcription factor ETC2 OS=Arabidopsis thaliana OX=3702 GN=ETC2 PE=1 ... [more]
Q9M1577.8e-2061.64MYB-like transcription factor ETC3 OS=Arabidopsis thaliana OX=3702 GN=ETC3 PE=2 ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 26..74
e-value: 8.4E-6
score: 35.3
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 29..68
e-value: 2.69591E-6
score: 38.3254
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 31..69
e-value: 3.0E-7
score: 30.5
NoneNo IPR availableGENE3D1.10.10.60coord: 30..74
e-value: 1.8E-9
score: 39.3
NoneNo IPR availablePANTHERPTHR47998TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1coord: 1..79
NoneNo IPR availablePANTHERPTHR47998:SF12MYB-LIKE TRANSCRIPTION FACTOR ETC3coord: 1..79
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 31..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0030773.1Lag0030773.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030154 cell differentiation
cellular_component GO:0005634 nucleus
molecular_function GO:0000976 transcription cis-regulatory region binding