Lag0030767 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0030767
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RING-type domain-containing protein
Location	chr11: 1175097 .. 1179389 (+)
RNA-Seq Expression	Lag0030767
Synteny	Lag0030767

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTTCATCTTTGCTAAGGACACATTTGAATTTGTAAGGGACTATCGGACAACCACATATCTCCACAATGGTATGATATTGTCCACTTTGGGCATAACCCTCATGGCTTTGCTTTTGGATCACCCCAAAAGGTCTCATACCAATGGAAATACTTGTCCTCCCTTATAAACCCATGATCATCCCCTTACCTAGCCAATGTAGGACTTTGGTCGCACACCCAACAATCCTCCCCTCGAACAAAGTACCACCGAGCCTCCCCTCAAATAGTCATCTATCCGTCCAACTCTCTAGGCTTCACCGCTTTACCGAGAGTTCTTGCTCTTATCTAGGACAACTCCTCTTCTCCGGAGTATACCCGCCCACCTAGAGCTCAACCACGACCTCCACCATGACTATTAAGGCTCACAACTTCTTTGTTCAGAACCCGAGGATTCCACCCAACACGGCTACTCCCGGGGCATGGCTCTGATACCACTTGTAAGGGACTACCGGACACCCACATATCTCCACAATGGTATGATATTGTCCACTTTGGGCATAAGCCCTCATGGCTTTGTTTTTGGTTCACCCCAAAAGGCCTCATATATACCAATGGAAATACTTGTCCTCCCTTATAAACCCATGATCATCCCCTTACCTAGCCAATGTAGGACTTTGGTCGCACACCCAACAGAATTCTTAGCCAAATTCCAAAAAAAAAAACTAAGTTTTTGAAAACTATATTTTTTAGTTTTCAAGACTTGACTTGGTTTTTGAAAAAAATGGAAAGAAGATTGATAAGAAAACAAAAGATATTTATAAATTTAATTTTCAAAAACTAAAAATCAAAGGATTATTAAACATGGTCTAAATTAACAAGTATCAACTGTAAAAAATGATATCGCTTCTTGCTATAGTTTTTTATAAACCAATTAAGAACCATCTAACAAATTATGATTTTGGGTAATGGATAAAACTCCCAATCTTTTCTTTGTCTAGAGGTGCGATTAGGAAGAAAAATGAATCTAATTTAAGATAATGAAATGCCATTTAGCTCTAATACATGAATATTAAGTCATAATGTTGGATTAGGCACGTCTGGCCAGTGTTTGTTGTGGTAGCTAGGGTACGAAAACAGTAACGACCTTACTTGCATAGGATCCGTTTTATAGGTCATAAATCTATGTCCTTGCATGTCATAAATTTGAGTCCTCGAGTTCTAATGTTTTTGTTTTATAGAAGGTTGAAGTTCGAAAGTTATCCCATGATTTTAAACATTTCAATTTAGTCTCTATGATTTGAATTTAATTTATATATGGTAAATATATACTAATATATGTAGAAATTTTTTTTATTAAGTTTATTCAAATTTATATTTTCAAGTGAAAATAAATTACCAAATAATTCTGCGACGAACAACTAAACTTGAGCATAACTCAATTAGTTAAGATATATATTATCGACCAAAAAGTTGGATATTTGAATTTTCACCTCCACGTATTGTTGAACTAAAAAAACAGCTAACTAATAAATTGATTGTAAATTGATTTTTTTTTATCAAATAAAATATTGCAATTTTTAAGGTCTAATATTTTGTAAGTTCTAAGACGAAAATAACAAAAAAAAAAAAAAAAAAAATCTAAAAGTTAGATGATAATAAACATGAGATCCCATCTTGGTGTAAGATATTTTTCATTTTAATAAATCTCAGCCATTGATTTTTTTTTTTTTTTTTTGAGTACCTCAGCCATTGAATTATTTCTAGTATGTCCTGTGGCAATGCATTATTGTCCACAATTATTTTATGGGTTAGGTGGATTGAATGGCATTTAAGGTGTGCTTGGGAATGCTTTTTATAAGATAAAAATAGATAAATAAAAAAATAAAATTAAAATAAAATAAAATAAAAAGTCTTTTAAATGTGGGGTTTGAAAATCGGTACCAACCATGGATGTCGTCATCAAGCATAGTTCAGTAGTAATTGACATGCACATTCTATCAACATGTTCGAATCTCCCACCCCAAATATTGTTGATTAAAAAAGAATCTTAATAAATGAAATTGATTTTTTTATTCACAAATGAAATTGATTTTAAAGCAATTTTAAACGCTGCTTATAAATGTTTGGCTCAAAATGCATTTGTAGCTTCCAATGATTCTTGAAAAATAATATTTATTTTTCAAAACATATGTGTTGGGATATTTTTTTTCACGAAATATTACTATAATTTTGGTCTTTTATTAAAAAAATAATAAAATGTACCCATTAAACTTGTCAATTTGTATCAAATTTTATCTTAAACAATTTTATCAAATTGCACTTTAAACTTAGATAATTGTTGCAATTTTAACCTTAAATTTGAAAAAAAAAAATGTTGCAATTTTTTACTTTTGAAAAGTCTTTTTTTTTCCAATTAAATATGTGGAGATTGAATGGGAGATTGAAACCTCAAACCTCTTATCGTCATTGACATATACCTAAATCAATTGAGCTAGGCTCAAGTTGGCACCTTTAAAAACTTTTGTAGGAAAAAAATGTGTATGGTAAAAAAAAAACTTTATTTGATTATTGTATAGCTTACTAGTCAAACTCTTTGGGATGCAAAAACTCCTGATTTATAATTACATGGAAAATAAGTAAAGTTTCTCACTAGTTTTCATGGAGGAAAAAAAAATGTTTTCAGTAAGGATATTTTTGAAAATTATTGAAAAGTCAAGGATATTAGTGAAATGTTGAAACTTTAACATGTACCATCTCAAACCTAATGGTATGGATATTTTTTAACATTTTCTAAAGTTTGGGAATTTTTGGAACTTTTATAGTTTGGGAGTATTTTTTAAACGCAAACATCGTAGTATTTTTATAATTTAGCCGACTCAAAAATATGTATTATGTTCTTGAAGTTTAGTGGACAAAATAAAATAAACCCGAAATCTCAGGAAAAAAATAATAATAATGAAAGAAAGAGATTTAAGAGATTTCAATAATGCACTTGGGAAAGATGTCCCTTCAATAAATATCAGTCACTGAATACATTTGGATGTGAATTTTTGGAGATAGAAATTAGAAATAAATAAGAAATAAAAAAACGTGTTGAATTGAATAAGTTTTTTTTTTTTTTTTTGGATAAATGTTGAATTGAATAAGTTGGAACATTGTGGTCCGCAAGGAAATAAAAAGGAATCTTTTAACATGATAATATTATCTACAATACACTATGAATTTGTCGCTAAGTTTAGTTTGATTAAATAGTTTTCTTTTTGGACAAAATACACTTTTGGTCCCTGAAGTTTGAACTTGGTGTCTATTTGTTTCTTGAAGTTTAAAAAATTATACTTTAGTCTCCGATGTTTAAAAATAGTTCTAAATGGTCCTTAAATTAATTTGACCGTTAGTTGACTAGCGAAAAAATGATGTGGCATGTTGAGGTGACAAATTTAATAATTTTATATTATTATTTTTTTTTATTACATGTCATTTTCTTTTTTTTTCCTCCTTCTCTTTCTCTCTCTTCCCTCATCTTCCTTCTCCCTCACGTTGTCCTTCTTCTTCCCTTTCCCTCTCCCAGATTTCCCACCGCATAACAATCCCCAAATCCCCCTTCAAGATTTCACCGCCGCCCACAGCAGCGACTCGGCGCTGCAGTCAAAACTAGAGACCAGAGTCCAGTCTCTGCTCCTCAAGGTCGCCATCATGATCTTCTTAACCAGCCTCTTCTTCATCTTAATAGGCCTCTCCACCGCCCTCCTTCTCATCCACCTTTACATTGTCAGTGCCCTCTGTTATAGGTAATTTTGGACCACCACAGCGTACGAGGAGCTGACGGGACAACCGGGAGGAGATAGGACCAAGAAAGGGACCCAGAGGGAGACCATACCGACGGGCCGGGCCAACATGGCCCGACCCGTACGGTCGGCCTCGGCCTTGGGCTGAGGCGAGCATTATGGTCGGCCTCGGCCCAAGGCCGAGGCCGACCACTCGGCCCGTTTGCACGGGCCGAGTCCGTTTGCCTCCGCTCGGCCCCTACCGCTTCCAGCTGCCTCGGACCAGCCTGCTTCGTCCCAGAACGCCTCCAAACCCTAGGAGTCCGAGCAGGTATTTATACCTCTCTTCGCCATCGAAGAAGGGGGCCGGAAAACTCTATTCTTGACTTCTTTCTCTACTCTCTAGCTGCTCAGTTTCCTGACTTAGGCATCGGAGGCGGTGTGGCCTATACCACACCGGTGTCCAGCGATTCTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGCTTCTACAAATTCACTGTCGATGTCACGTGAAGGCCAGGTGA

mRNA sequence

ATGATTTTCATCTTTGCTAAGGACACATTTGAATTTGTAAGGGACTATCGGACAACCACATATCTCCACAATGAACCCGAGGATTCCACCCAACACGGCTACTCCCGGGGCATGGCTCTGATACCACTTGTAAGGGACTACCGGACACCCACATATCTCCACAATGATTTCCCACCGCATAACAATCCCCAAATCCCCCTTCAAGATTTCACCGCCGCCCACAGCAGCGACTCGGCGCTGCAGTCAAAACTAGAGACCAGAGTCCAGTCTCTGCTCCTCAAGGTCGCCATCATGATCTTCTTAACCAGCCTCTTCTTCATCTTAATAGGCCTCTCCACCGCCCTCCTTCTCATCCACCTTTACATTGACCAAGAAAGGGACCCAGAGGGAGACCATACCGACGGGCCGGGCCAACATGGCCCGACCCGTACGGTCGGCCTCGGCCTTGGGCTGAGGCGAGCATTATGGTCGGCCTCGGCCCAAGGCCGAGGCCGACCACTCGGCCCGTTTGCACGGGCCGAGTCCGTTTGCCTCCGCTCGGCCCCTACCGCTTCCAGCTGCCTCGGACCAGCCTGCTTCGTCCCAGAACGCCTCCAAACCCTAGGAGTCCGAGCAGGTATTTATACCTCTCTTCGCCATCGAAGAAGGGGGCCGGAAAACTCTATTCTTGACTTCTTTCTCTACTCTCTAGCTGCTCAGTTTCCTGACTTAGGCATCGGAGGCGGTGTGGCCTATACCACACCGGTGTCCAGCGATTCTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGCTTCTACAAATTCACTGTCGATGTCACGTGAAGGCCAGGTGA

Coding sequence (CDS)

ATGATTTTCATCTTTGCTAAGGACACATTTGAATTTGTAAGGGACTATCGGACAACCACATATCTCCACAATGAACCCGAGGATTCCACCCAACACGGCTACTCCCGGGGCATGGCTCTGATACCACTTGTAAGGGACTACCGGACACCCACATATCTCCACAATGATTTCCCACCGCATAACAATCCCCAAATCCCCCTTCAAGATTTCACCGCCGCCCACAGCAGCGACTCGGCGCTGCAGTCAAAACTAGAGACCAGAGTCCAGTCTCTGCTCCTCAAGGTCGCCATCATGATCTTCTTAACCAGCCTCTTCTTCATCTTAATAGGCCTCTCCACCGCCCTCCTTCTCATCCACCTTTACATTGACCAAGAAAGGGACCCAGAGGGAGACCATACCGACGGGCCGGGCCAACATGGCCCGACCCGTACGGTCGGCCTCGGCCTTGGGCTGAGGCGAGCATTATGGTCGGCCTCGGCCCAAGGCCGAGGCCGACCACTCGGCCCGTTTGCACGGGCCGAGTCCGTTTGCCTCCGCTCGGCCCCTACCGCTTCCAGCTGCCTCGGACCAGCCTGCTTCGTCCCAGAACGCCTCCAAACCCTAGGAGTCCGAGCAGGTATTTATACCTCTCTTCGCCATCGAAGAAGGGGGCCGGAAAACTCTATTCTTGACTTCTTTCTCTACTCTCTAGCTGCTCAGTTTCCTGACTTAGGCATCGGAGGCGGTGTGGCCTATACCACACCGGTGTCCAGCGATTCTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGCTTCTACAAATTCACTGTCGATGTCACGTGAAGGCCAGGTGA

Protein sequence

MIFIFAKDTFEFVRDYRTTTYLHNEPEDSTQHGYSRGMALIPLVRDYRTPTYLHNDFPPHNNPQIPLQDFTAAHSSDSALQSKLETRVQSLLLKVAIMIFLTSLFFILIGLSTALLLIHLYIDQERDPEGDHTDGPGQHGPTRTVGLGLGLRRALWSASAQGRGRPLGPFARAESVCLRSAPTASSCLGPACFVPERLQTLGVRAGIYTSLRHRRRGPENSILDFFLYSLAAQFPDLGIGGGVAYTTPVSSDSCWSCRSRLPQLLQIHCRCHVKAR

Homology

[Close]

BLAST of Lag0030767 vs. NCBI nr
Match: KAE8651650.1 (hypothetical protein Csa_021355 [Cucumis sativus])

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-04
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 48  RTPTYLHNDF--PPHNNPQIPLQDFTAAHS---SDSALQSKLETRVQSLLLKVAIMIFLT 107
           ++P +L N     P NNPQ+P Q   A             K ET++ SLLLK+AIMI LT
Sbjct: 37  QSPNFLQNSTHPSPPNNPQMPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLT 96

Query: 108 SLFFILIGLSTALLLIHLYI 123
           +LFF+ +GL+TALLLIHL +
Sbjct: 97  TLFFVFLGLATALLLIHLCV 116

[Close]

BLAST of Lag0030767 vs. NCBI nr
Match: XP_022153343.1 (RING-H2 finger protein ATL56-like [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 3.9e-04
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 65  IPLQDFTAAHSSDSALQSKLETRVQSLLLKVAIMIFLTSLFFILIGLSTALLLIHLYI 123
           +P QD  AAH  D     K ET+V SLLLKV IMI LT+LFF+ +GL+TALLLIHL +
Sbjct: 1   MPPQDSAAAHGGDLP-SPKPETKVLSLLLKVLIMILLTTLFFLFLGLATALLLIHLCV 57

[Close]

BLAST of Lag0030767 vs. ExPASy TrEMBL
Match: A0A0A0LJ61 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.5e-05
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 48  RTPTYLHNDF--PPHNNPQIPLQDFTAAHS---SDSALQSKLETRVQSLLLKVAIMIFLT 107
           ++P +L N     P NNPQ+P Q   A             K ET++ SLLLK+AIMI LT
Sbjct: 37  QSPNFLQNSTHPSPPNNPQMPFQPSAAVSGHPLPHPPPPPKPETQLLSLLLKIAIMILLT 96

Query: 108 SLFFILIGLSTALLLIHLYI 123
           +LFF+ +GL+TALLLIHL +
Sbjct: 97  TLFFVFLGLATALLLIHLCV 116

[Close]

BLAST of Lag0030767 vs. ExPASy TrEMBL
Match: A0A6J1DH78 (RING-H2 finger protein ATL56-like OS=Momordica charantia OX=3673 GN=LOC111020858 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-04
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 65  IPLQDFTAAHSSDSALQSKLETRVQSLLLKVAIMIFLTSLFFILIGLSTALLLIHLYI 123
           +P QD  AAH  D     K ET+V SLLLKV IMI LT+LFF+ +GL+TALLLIHL +
Sbjct: 1   MPPQDSAAAHGGDLP-SPKPETKVLSLLLKVLIMILLTTLFFLFLGLATALLLIHLCV 57

The following BLAST results are available for this feature:

BLAST of Lag0030767 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651650.1	1.8e-04	47.50	hypothetical protein Csa_021355 [Cucumis sativus]	[more]
XP_022153343.1	3.9e-04	60.34	RING-H2 finger protein ATL56-like [Momordica charantia]	[more]

BLAST of Lag0030767 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0030767 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ61	8.5e-05	47.50	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 P...	[more]
A0A6J1DH78	1.9e-04	60.34	RING-H2 finger protein ATL56-like OS=Momordica charantia OX=3673 GN=LOC111020858...	[more]

BLAST of Lag0030767 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0030767.1	Lag0030767.1	mRNA