Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTGGAGATTCTACAAAGAAAAGATGCCTTATGGAGGATGATTATTGCTTCTAAGTATGGGGTCTCTACCAACAATTTTAAATCGGGAGCTAGATCCATGCACTCATCCAAAGGTCCCTGGAAGGCCATTCACGGATTGCAGCCCTTGCTATCTAATCATATAGACTTTATAGTGGGTAAGGGAGATAAAGCAATGTCTTGGGAGGATAAATGGATTGGTCCCTCGTGCCTTCAGTCTTCGTTCCCTCTTCTGTACAGTTTATCGCTTCATAAGGAGTCCTGTGTTGCTGACTGTTGGATTGAGTCCTCTAGGGCCTGGAACCTTCATCCGAGAAGGCACCTAAATGATGAAGAAACCGCCGAATGGGCCACTTTGTCCCAACTTCTTTCCACCTTTACATTCATAGACAGGGAGGATTATTGGTCATGGAACCTTGAGAAATCTGGTGTCTTTTCTACCAATTCTCTCACTAAAAGGCTTGCCTCACAAGAGCCCCACACCTCTACATCCCTATACGGCCAATTATGGAAGGGGCCCATGCCGAAGAAGGTCAAGTTTTTTATATGGGAGCTTAGCCACCTTTGTATTAACACCGCGGATGTCATCCAAAGAAAACATCCTTGGCAGACCTTATCCCCCACTTGCTGCTGCATATGCTACAAGGCCAATGAATCTCAGATTCATCTCTTCAGTCAGTGCTCCTTTGCAACTGCTTTCTGGGAACATCTTCAACAAGCATTTGGCTGGACGTATACTAGACCGGGTGACATCACTTCCCTTTTAAATTCTTCTATTGTTGGGCACCCCTTTACTAGAGAAAAGAAGCTTCTGTGGCTCAACTTCATCTATGCTTTTTTTTGGAATATTTGGTTGGAAAGAAATGCTAGGATCTTCACGGAAAAATCGCATAATATTGATGCTATCATGGATATTATGCGATTTTTCCGGGAAGATCATAATATTGATGTTATCATGGATTCTATGTCTGAAACCTCTCTCATGACTCTCTCCTTTTCTCTCCCTCTCTCCCCCCTCCCCGCCACCCATCCCCTGCCGATCACCCCCCACCTTCTCACCATGACCCTCTCCCCTCCCTATCGCCGCCGAACATCGAACAAATCATCCAACCATGACAGTCTCCCAACCAATCTTTTCAAGATTGAAAGAAAGACTTTCTCCATCACCACCGACCAAAAGAACCCAAGCTTTTTTCGTTTCACCGAAGCTACCAAGGAAAAAAGCTTCACCTTGACTCTCTCAAATGAGACTTTATCTTGGCTCCAATCCTGTTTCGATAGACTCTGCAACCTTCCCCTGACTCAGAAATTCTTCATTGAGACCAGAGTAGATGAAGTAGTCTTTTGGGTAGAAAAAATATCGACCAAGAAAGGACACTCAGCAGAGATAGCAAGCTTGGACCGAACGGGGGTATTAATAAGCTCATTGTACCTGTAGGTGAGAATCGAAAAGGTTGGCGCAACCTTATCAACTGCATTAACTCCCTCAACAACAATGGAGCCACCAAAGAGCCACGGCTGATAGACAATGGAAGGAATAAGACCTCGTACAAGGACGCTTTAAAGGCGACTCATAAGGTCCACAACCCACCCATTCACCAACAACCTCTGGAAGAAGCTCCAACATCACCAAACCAACAGTTCGCTGCTTTGTATCTGTCATCCTCGGTCATTATACAGAGAAAATTCTTCCATGATAGTTGGTACGATATTCTAAGGGCTTTACAACAACATCTATCTGATTTATCATCTGTCAGTCCCATTCAACCCGATAAAGCCCTCTCGCTTACAAAGATGAATAACAAGCCCGGATAA
mRNA sequence
ATGGAACTGGAGATTCTACAAAGAAAAGATGCCTTATGGAGGATGATTATTGCTTCTAAGTATGGGGTCTCTACCAACAATTTTAAATCGGGAGCTAGATCCATGCACTCATCCAAAGGTCCCTGGAAGGCCATTCACGGATTGCAGCCCTTGCTATCTAATCATATAGACTTTATAGTGGGTAAGGGAGATAAAGCAATGTCTTGGGAGGATAAATGGATTGGTCCCTCGTGCCTTCAGTCTTCGTTCCCTCTTCTGTACAGTTTATCGCTTCATAAGGAGTCCTGTGTTGCTGACTGTTGGATTGAGTCCTCTAGGGCCTGGAACCTTCATCCGAGAAGGCACCTAAATGATGAAGAAACCGCCGAATGGGCCACTTTGTCCCAACTTCTTTCCACCTTTACATTCATAGACAGGGAGGATTATTGGTCATGGAACCTTGAGAAATCTGGTGTCTTTTCTACCAATTCTCTCACTAAAAGGCTTGCCTCACAAGAGCCCCACACCTCTACATCCCTATACGGCCAATTATGGAAGGGGCCCATGCCGAAGAAGGTCAAGTTTTTTATATGGGAGCTTAGCCACCTTTGTATTAACACCGCGGATGTCATCCAAAGAAAACATCCTTGGCAGACCTTATCCCCCACTTGCTGCTGCATATGCTACAAGGCCAATGAATCTCAGATTCATCTCTTCAGTCAGTGCTCCTTTGCAACTGCTTTCTGGGAACATCTTCAACAAGCATTTGGCTGGACGTATACTAGACCGGGTGACATCACTTCCCTTTTAAATTCTTCTATTGTTGGGCACCCCTTTACTAGAGAAAAGAAGCTTCTGTGGCTCAACTTCATCTATGCTTTTTTTTGGAATATTTGGTTGGAAAGAAATGCTAGGATCTTCACGGAAAAATCGCATAATATTGATGCTATCATGGATATTATGCGATTTTTCCGGGAAGATCATAATATTGATGTTATCATGGATTCTATGTCTGAAACCTCTCTCATGACTCTCTCCTTTTCTCTCCCTCTCTCCCCCCTCCCCGCCACCCATCCCCTGCCGATCACCCCCCACCTTCTCACCATGACCCTCTCCCCTCCCTATCGCCGCCGAACATCGAACAAATCATCCAACCATGACAGTCTCCCAACCAATCTTTTCAAGATTGAAAGAAAGACTTTCTCCATCACCACCGACCAAAAGAACCCAAGCTTTTTTCGTTTCACCGAAGCTACCAAGGAAAAAAGCTTCACCTTGACTCTCTCAAATGAGACTTTATCTTGGCTCCAATCCTGTTTCGATAGACTCTGCAACCTTCCCCTGACTCAGAAATTCTTCATTGAGACCAGAGTAGATGAAGTAGTCTTTTGGCTCATTGTACCTGTAGGTGAGAATCGAAAAGGTTGGCGCAACCTTATCAACTGCATTAACTCCCTCAACAACAATGGAGCCACCAAAGAGCCACGGCTGATAGACAATGGAAGGAATAAGACCTCGTACAAGGACGCTTTAAAGGCGACTCATAAGGTCCACAACCCACCCATTCACCAACAACCTCTGGAAGAAGCTCCAACATCACCAAACCAACAGTTCGCTGCTTTGTATCTGTCATCCTCGGTCATTATACAGAGAAAATTCTTCCATGATAGTTGGTACGATATTCTAAGGGCTTTACAACAACATCTATCTGATTTATCATCTGTCAGTCCCATTCAACCCGATAAAGCCCTCTCGCTTACAAAGATGAATAACAAGCCCGGATAA
Coding sequence (CDS)
ATGGAACTGGAGATTCTACAAAGAAAAGATGCCTTATGGAGGATGATTATTGCTTCTAAGTATGGGGTCTCTACCAACAATTTTAAATCGGGAGCTAGATCCATGCACTCATCCAAAGGTCCCTGGAAGGCCATTCACGGATTGCAGCCCTTGCTATCTAATCATATAGACTTTATAGTGGGTAAGGGAGATAAAGCAATGTCTTGGGAGGATAAATGGATTGGTCCCTCGTGCCTTCAGTCTTCGTTCCCTCTTCTGTACAGTTTATCGCTTCATAAGGAGTCCTGTGTTGCTGACTGTTGGATTGAGTCCTCTAGGGCCTGGAACCTTCATCCGAGAAGGCACCTAAATGATGAAGAAACCGCCGAATGGGCCACTTTGTCCCAACTTCTTTCCACCTTTACATTCATAGACAGGGAGGATTATTGGTCATGGAACCTTGAGAAATCTGGTGTCTTTTCTACCAATTCTCTCACTAAAAGGCTTGCCTCACAAGAGCCCCACACCTCTACATCCCTATACGGCCAATTATGGAAGGGGCCCATGCCGAAGAAGGTCAAGTTTTTTATATGGGAGCTTAGCCACCTTTGTATTAACACCGCGGATGTCATCCAAAGAAAACATCCTTGGCAGACCTTATCCCCCACTTGCTGCTGCATATGCTACAAGGCCAATGAATCTCAGATTCATCTCTTCAGTCAGTGCTCCTTTGCAACTGCTTTCTGGGAACATCTTCAACAAGCATTTGGCTGGACGTATACTAGACCGGGTGACATCACTTCCCTTTTAAATTCTTCTATTGTTGGGCACCCCTTTACTAGAGAAAAGAAGCTTCTGTGGCTCAACTTCATCTATGCTTTTTTTTGGAATATTTGGTTGGAAAGAAATGCTAGGATCTTCACGGAAAAATCGCATAATATTGATGCTATCATGGATATTATGCGATTTTTCCGGGAAGATCATAATATTGATGTTATCATGGATTCTATGTCTGAAACCTCTCTCATGACTCTCTCCTTTTCTCTCCCTCTCTCCCCCCTCCCCGCCACCCATCCCCTGCCGATCACCCCCCACCTTCTCACCATGACCCTCTCCCCTCCCTATCGCCGCCGAACATCGAACAAATCATCCAACCATGACAGTCTCCCAACCAATCTTTTCAAGATTGAAAGAAAGACTTTCTCCATCACCACCGACCAAAAGAACCCAAGCTTTTTTCGTTTCACCGAAGCTACCAAGGAAAAAAGCTTCACCTTGACTCTCTCAAATGAGACTTTATCTTGGCTCCAATCCTGTTTCGATAGACTCTGCAACCTTCCCCTGACTCAGAAATTCTTCATTGAGACCAGAGTAGATGAAGTAGTCTTTTGGCTCATTGTACCTGTAGGTGAGAATCGAAAAGGTTGGCGCAACCTTATCAACTGCATTAACTCCCTCAACAACAATGGAGCCACCAAAGAGCCACGGCTGATAGACAATGGAAGGAATAAGACCTCGTACAAGGACGCTTTAAAGGCGACTCATAAGGTCCACAACCCACCCATTCACCAACAACCTCTGGAAGAAGCTCCAACATCACCAAACCAACAGTTCGCTGCTTTGTATCTGTCATCCTCGGTCATTATACAGAGAAAATTCTTCCATGATAGTTGGTACGATATTCTAAGGGCTTTACAACAACATCTATCTGATTTATCATCTGTCAGTCCCATTCAACCCGATAAAGCCCTCTCGCTTACAAAGATGAATAACAAGCCCGGATAA
Protein sequence
MELEILQRKDALWRMIIASKYGVSTNNFKSGARSMHSSKGPWKAIHGLQPLLSNHIDFIVGKGDKAMSWEDKWIGPSCLQSSFPLLYSLSLHKESCVADCWIESSRAWNLHPRRHLNDEETAEWATLSQLLSTFTFIDREDYWSWNLEKSGVFSTNSLTKRLASQEPHTSTSLYGQLWKGPMPKKVKFFIWELSHLCINTADVIQRKHPWQTLSPTCCCICYKANESQIHLFSQCSFATAFWEHLQQAFGWTYTRPGDITSLLNSSIVGHPFTREKKLLWLNFIYAFFWNIWLERNARIFTEKSHNIDAIMDIMRFFREDHNIDVIMDSMSETSLMTLSFSLPLSPLPATHPLPITPHLLTMTLSPPYRRRTSNKSSNHDSLPTNLFKIERKTFSITTDQKNPSFFRFTEATKEKSFTLTLSNETLSWLQSCFDRLCNLPLTQKFFIETRVDEVVFWLIVPVGENRKGWRNLINCINSLNNNGATKEPRLIDNGRNKTSYKDALKATHKVHNPPIHQQPLEEAPTSPNQQFAALYLSSSVIIQRKFFHDSWYDILRALQQHLSDLSSVSPIQPDKALSLTKMNNKPG
Homology
BLAST of Lag0030715 vs. NCBI nr
Match:
KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 188.3 bits (477), Expect = 1.8e-43
Identity = 110/303 (36.30%), Postives = 144/303 (47.52%), Query Frame = 0
Query: 4 EILQRKDALWRMIIASKYGVSTNNFKSGARSMHSSKGPWKAIHGLQPLLSNHIDFIVGKG 63
+ L K+ LW+ +I SKY S+ PWKA+ +I + V G
Sbjct: 601 KFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDG 660
Query: 64 DKAMSWEDKWIGPSCLQSSFPLLYSLSLHKESCVADCWIESSRAWNLHPRRHLNDEETAE 123
+ W D W G S L + P L++LS +K+ V D W S + WN+H R L D E
Sbjct: 661 EDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNL 720
Query: 124 WATLSQLLSTFTFIDREDYWSWNLEKSGVFSTNSLTKRL--ASQEP-HTSTSLYGQLWKG 183
W + L T W L + +F T S+ K L AS P + SLY LWK
Sbjct: 721 WHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKV 780
Query: 184 PMPKKVKFFIWELSHLCINTADVIQRKHPWQTLSPTCCCICYKANESQIHLFSQCSFATA 243
PKK KFFIW L H CINTAD +Q++ P TLSP C +C K+ E HLF C ++
Sbjct: 781 DFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQ 840
Query: 244 FWEHLQQAFGWTYTRPGDITSLLNSSIVGHPFTREKKLLWLNFIYAFFWNIWLERNARIF 303
W Q W T P D+ SL +I +K L+ N I W IWLERN RIF
Sbjct: 841 LWSKAQALLKWNST-PNDVKSLA-QNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIF 900
BLAST of Lag0030715 vs. NCBI nr
Match:
KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 187.2 bits (474), Expect = 4.1e-43
Identity = 110/303 (36.30%), Postives = 143/303 (47.19%), Query Frame = 0
Query: 4 EILQRKDALWRMIIASKYGVSTNNFKSGARSMHSSKGPWKAIHGLQPLLSNHIDFIVGKG 63
+ L K+ LW+ +I SKY S+ PWKA+ +I + V G
Sbjct: 695 KFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDG 754
Query: 64 DKAMSWEDKWIGPSCLQSSFPLLYSLSLHKESCVADCWIESSRAWNLHPRRHLNDEETAE 123
+ W D W G S L P L++LS +K+ V D W S + WN+H R L D E
Sbjct: 755 EDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNL 814
Query: 124 WATLSQLLSTFTFIDREDYWSWNLEKSGVFSTNSLTKRL--ASQEP-HTSTSLYGQLWKG 183
W + L T W L + +F T S+ K L AS P + SLY LWK
Sbjct: 815 WHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKV 874
Query: 184 PMPKKVKFFIWELSHLCINTADVIQRKHPWQTLSPTCCCICYKANESQIHLFSQCSFATA 243
PKK KFFIW L H CINTAD +Q++ P TLSP C +C K+ E HLF C ++
Sbjct: 875 DFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQ 934
Query: 244 FWEHLQQAFGWTYTRPGDITSLLNSSIVGHPFTREKKLLWLNFIYAFFWNIWLERNARIF 303
W Q W T P D+ SL +I +K L+ N I W IWLERN RIF
Sbjct: 935 LWSKAQALLKWNST-PNDVKSLA-QNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIF 994
BLAST of Lag0030715 vs. NCBI nr
Match:
KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 183.3 bits (464), Expect = 5.9e-42
Identity = 104/303 (34.32%), Postives = 143/303 (47.19%), Query Frame = 0
Query: 4 EILQRKDALWRMIIASKYGVSTNNFKSGARSMHSSKGPWKAIHGLQPLLSNHIDFIVGKG 63
+ L KD LW+ +I SKY S+ PWKA+ +I + V G
Sbjct: 803 KFLTEKDPLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVNDG 862
Query: 64 DKAMSWEDKWIGPSCLQSSFPLLYSLSLHKESCVADCWIESSRAWNLHPRRHLNDEETAE 123
+ W D W G + L + P L++LS +K+ V + W SS W+LH R L D E
Sbjct: 863 EDISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEENL 922
Query: 124 WATLSQLLSTFTFIDREDYWSWNLEKSGVFSTNSLTKRLAS---QEPHTSTSLYGQLWKG 183
W + L T WNL + +F T S+ + +A + +LY LWK
Sbjct: 923 WHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPNLYKTLWKV 982
Query: 184 PMPKKVKFFIWELSHLCINTADVIQRKHPWQTLSPTCCCICYKANESQIHLFSQCSFATA 243
PKK KFFIW L H CINTAD +Q++ P TLSP C +C K+ E HLF C ++
Sbjct: 983 EFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQ 1042
Query: 244 FWEHLQQAFGWTYTRPGDITSLLNSSIVGHPFTREKKLLWLNFIYAFFWNIWLERNARIF 303
W + W T P D+ SL+ +I +K L+ N W IWLERN RIF
Sbjct: 1043 LWSKAKALLNWNST-PTDVQSLI-QNICSLNIRNQKGLITFNTNATILWKIWLERNNRIF 1102
BLAST of Lag0030715 vs. NCBI nr
Match:
CAN68165.1 (hypothetical protein VITISV_008538 [Vitis vinifera])
HSP 1 Score: 178.3 bits (451), Expect = 1.9e-40
Identity = 99/309 (32.04%), Postives = 152/309 (49.19%), Query Frame = 0
Query: 11 ALWRMIIASKYGVSTNNFKSGARSMHSSKGPWKAIHGLQPLLSNHIDFIVGKGDKAMSWE 70
ALW +I S YG +N + + S + PWKAI + S FIVG GD+ WE
Sbjct: 994 ALWHQVILSIYGSHSNGWDANTXVRWSHRCPWKAIAQVFQDFSKFTRFIVGDGDRIRFWE 1053
Query: 71 DKWIGPSCLQSSFPLLYSLSLHKESCVADCWIESSR--AWNLHPRRHLNDEETAEWATLS 130
D W G L FP L + + K ++ + S+R +WN + RR+L+D E + +L
Sbjct: 1054 DLWWGDQSLGVRFPRLLRVVMDKNILISSI-LGSTRPFSWNFNFRRNLSDSEIEKVESLM 1113
Query: 131 QLLSTFTFIDR-EDYWSWNLEKSGVFSTNSLTKRLASQEPHTSTSLYGQLWKGPMPKKVK 190
Q L D SW+L SG+F+ S L+ S +W +P K+K
Sbjct: 1114 QSLDHIHLSPSVPDKRSWSLSSSGLFTVKSFFLALSQISGLPSVFPTKLVWNSQVPFKIK 1173
Query: 191 FFIWELSHLCINTADVIQRKHPWQTLSPTCCCICYKANESQIHLFSQCSFATAFWEHLQQ 250
FF+W ++H +NT D++Q + P++ LSP C +C + E+ HLF CS W L Q
Sbjct: 1174 FFVWLVAHKKVNTNDMLQLRRPYKALSPDICMLCMERGETVDHLFLHCSMTMGLWHRLFQ 1233
Query: 251 AFGWTYTRPGDITSLLNSSIVGHPFTREKKLLWLNFIYAFFWNIWLERNARIFTEKSHNI 310
+ P + +++ + G ++ +LW A W +W ERNARIF +KS N
Sbjct: 1234 LTKIDWVPPRSVFDMISINFNGFGSSKRGIVLWQAACIAILWVVWRERNARIFEDKSRNS 1293
Query: 311 DAIMDIMRF 317
+ + D++ F
Sbjct: 1294 ENLWDMIHF 1301
BLAST of Lag0030715 vs. NCBI nr
Match:
RVW15141.1 (putative ribonuclease H protein [Vitis vinifera])
HSP 1 Score: 177.6 bits (449), Expect = 3.2e-40
Identity = 100/309 (32.36%), Postives = 152/309 (49.19%), Query Frame = 0
Query: 11 ALWRMIIASKYGVSTNNFKSGARSMHSSKGPWKAIHGLQPLLSNHIDFIVGKGDKAMSWE 70
ALW +I S Y TN + + S + PWKAI + S F+VG GD+ WE
Sbjct: 378 ALWHQVILSIYESHTNGWDANTVVRWSHRCPWKAIAQVFQDFSKFTRFMVGDGDRIRFWE 437
Query: 71 DKWIGPSCLQSSFPLLYSLSLHKESCVADCWIESSR--AWNLHPRRHLNDEETAEWATLS 130
D W G L FP L + + K ++ + S+R +WN + RR+L+D E E +L
Sbjct: 438 DLWWGDQSLGVRFPRLLRVVMDKNIPISSI-LGSTRPFSWNFNFRRNLSDSEIEEVESLM 497
Query: 131 QLLSTFTFIDR-EDYWSWNLEKSGVFSTNSLTKRLASQEPHTSTSLYGQLWKGPMPKKVK 190
Q L D SW+L SG+F+ S L+ S +W +P K+K
Sbjct: 498 QSLDHIHLSPSVPDKRSWSLSSSGLFTVKSFFLALSQISSLPSVFPTKLVWNSQVPFKIK 557
Query: 191 FFIWELSHLCINTADVIQRKHPWQTLSPTCCCICYKANESQIHLFSQCSFATAFWEHLQQ 250
F+W ++H +NT D++Q + P++ LSP C +C + E++ HLF CS W L Q
Sbjct: 558 SFVWLVAHKKVNTNDMLQLRRPYKALSPDICMLCMEQGETEDHLFLHCSLTMGLWHRLFQ 617
Query: 251 AFGWTYTRPGDITSLLNSSIVGHPFTREKKLLWLNFIYAFFWNIWLERNARIFTEKSHNI 310
+ P I +L+++ G ++ +LW A W +W ERNARIF +KS N
Sbjct: 618 LTKIDWVPPRSICDMLSTNFNGFGSSKRGIILWQAACIALLWVVWRERNARIFEDKSRNS 677
Query: 311 DAIMDIMRF 317
+ + D++ F
Sbjct: 678 ENLWDMIHF 685
BLAST of Lag0030715 vs. ExPASy TrEMBL
Match:
A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)
HSP 1 Score: 188.3 bits (477), Expect = 8.8e-44
Identity = 110/303 (36.30%), Postives = 144/303 (47.52%), Query Frame = 0
Query: 4 EILQRKDALWRMIIASKYGVSTNNFKSGARSMHSSKGPWKAIHGLQPLLSNHIDFIVGKG 63
+ L K+ LW+ +I SKY S+ PWKA+ +I + V G
Sbjct: 601 KFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDG 660
Query: 64 DKAMSWEDKWIGPSCLQSSFPLLYSLSLHKESCVADCWIESSRAWNLHPRRHLNDEETAE 123
+ W D W G S L + P L++LS +K+ V D W S + WN+H R L D E
Sbjct: 661 EDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNL 720
Query: 124 WATLSQLLSTFTFIDREDYWSWNLEKSGVFSTNSLTKRL--ASQEP-HTSTSLYGQLWKG 183
W + L T W L + +F T S+ K L AS P + SLY LWK
Sbjct: 721 WHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKV 780
Query: 184 PMPKKVKFFIWELSHLCINTADVIQRKHPWQTLSPTCCCICYKANESQIHLFSQCSFATA 243
PKK KFFIW L H CINTAD +Q++ P TLSP C +C K+ E HLF C ++
Sbjct: 781 DFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQ 840
Query: 244 FWEHLQQAFGWTYTRPGDITSLLNSSIVGHPFTREKKLLWLNFIYAFFWNIWLERNARIF 303
W Q W T P D+ SL +I +K L+ N I W IWLERN RIF
Sbjct: 841 LWSKAQALLKWNST-PNDVKSLA-QNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIF 900
BLAST of Lag0030715 vs. ExPASy TrEMBL
Match:
A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)
HSP 1 Score: 187.2 bits (474), Expect = 2.0e-43
Identity = 110/303 (36.30%), Postives = 143/303 (47.19%), Query Frame = 0
Query: 4 EILQRKDALWRMIIASKYGVSTNNFKSGARSMHSSKGPWKAIHGLQPLLSNHIDFIVGKG 63
+ L K+ LW+ +I SKY S+ PWKA+ +I + V G
Sbjct: 695 KFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDG 754
Query: 64 DKAMSWEDKWIGPSCLQSSFPLLYSLSLHKESCVADCWIESSRAWNLHPRRHLNDEETAE 123
+ W D W G S L P L++LS +K+ V D W S + WN+H R L D E
Sbjct: 755 EDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNL 814
Query: 124 WATLSQLLSTFTFIDREDYWSWNLEKSGVFSTNSLTKRL--ASQEP-HTSTSLYGQLWKG 183
W + L T W L + +F T S+ K L AS P + SLY LWK
Sbjct: 815 WHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKV 874
Query: 184 PMPKKVKFFIWELSHLCINTADVIQRKHPWQTLSPTCCCICYKANESQIHLFSQCSFATA 243
PKK KFFIW L H CINTAD +Q++ P TLSP C +C K+ E HLF C ++
Sbjct: 875 DFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQ 934
Query: 244 FWEHLQQAFGWTYTRPGDITSLLNSSIVGHPFTREKKLLWLNFIYAFFWNIWLERNARIF 303
W Q W T P D+ SL +I +K L+ N I W IWLERN RIF
Sbjct: 935 LWSKAQALLKWNST-PNDVKSLA-QNICSLNIKTQKGLITFNTIAILLWKIWLERNNRIF 994
BLAST of Lag0030715 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 183.3 bits (464), Expect = 2.8e-42
Identity = 104/303 (34.32%), Postives = 143/303 (47.19%), Query Frame = 0
Query: 4 EILQRKDALWRMIIASKYGVSTNNFKSGARSMHSSKGPWKAIHGLQPLLSNHIDFIVGKG 63
+ L KD LW+ +I SKY S+ PWKA+ +I + V G
Sbjct: 803 KFLTEKDPLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVNDG 862
Query: 64 DKAMSWEDKWIGPSCLQSSFPLLYSLSLHKESCVADCWIESSRAWNLHPRRHLNDEETAE 123
+ W D W G + L + P L++LS +K+ V + W SS W+LH R L D E
Sbjct: 863 EDISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEENL 922
Query: 124 WATLSQLLSTFTFIDREDYWSWNLEKSGVFSTNSLTKRLAS---QEPHTSTSLYGQLWKG 183
W + L T WNL + +F T S+ + +A + +LY LWK
Sbjct: 923 WHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPNLYKTLWKV 982
Query: 184 PMPKKVKFFIWELSHLCINTADVIQRKHPWQTLSPTCCCICYKANESQIHLFSQCSFATA 243
PKK KFFIW L H CINTAD +Q++ P TLSP C +C K+ E HLF C ++
Sbjct: 983 EFPKKCKFFIWTLIHGCINTADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQ 1042
Query: 244 FWEHLQQAFGWTYTRPGDITSLLNSSIVGHPFTREKKLLWLNFIYAFFWNIWLERNARIF 303
W + W T P D+ SL+ +I +K L+ N W IWLERN RIF
Sbjct: 1043 LWSKAKALLNWNST-PTDVQSLI-QNICSLNIRNQKGLITFNTNATILWKIWLERNNRIF 1102
BLAST of Lag0030715 vs. ExPASy TrEMBL
Match:
A5BPI6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008538 PE=4 SV=1)
HSP 1 Score: 178.3 bits (451), Expect = 9.2e-41
Identity = 99/309 (32.04%), Postives = 152/309 (49.19%), Query Frame = 0
Query: 11 ALWRMIIASKYGVSTNNFKSGARSMHSSKGPWKAIHGLQPLLSNHIDFIVGKGDKAMSWE 70
ALW +I S YG +N + + S + PWKAI + S FIVG GD+ WE
Sbjct: 994 ALWHQVILSIYGSHSNGWDANTXVRWSHRCPWKAIAQVFQDFSKFTRFIVGDGDRIRFWE 1053
Query: 71 DKWIGPSCLQSSFPLLYSLSLHKESCVADCWIESSR--AWNLHPRRHLNDEETAEWATLS 130
D W G L FP L + + K ++ + S+R +WN + RR+L+D E + +L
Sbjct: 1054 DLWWGDQSLGVRFPRLLRVVMDKNILISSI-LGSTRPFSWNFNFRRNLSDSEIEKVESLM 1113
Query: 131 QLLSTFTFIDR-EDYWSWNLEKSGVFSTNSLTKRLASQEPHTSTSLYGQLWKGPMPKKVK 190
Q L D SW+L SG+F+ S L+ S +W +P K+K
Sbjct: 1114 QSLDHIHLSPSVPDKRSWSLSSSGLFTVKSFFLALSQISGLPSVFPTKLVWNSQVPFKIK 1173
Query: 191 FFIWELSHLCINTADVIQRKHPWQTLSPTCCCICYKANESQIHLFSQCSFATAFWEHLQQ 250
FF+W ++H +NT D++Q + P++ LSP C +C + E+ HLF CS W L Q
Sbjct: 1174 FFVWLVAHKKVNTNDMLQLRRPYKALSPDICMLCMERGETVDHLFLHCSMTMGLWHRLFQ 1233
Query: 251 AFGWTYTRPGDITSLLNSSIVGHPFTREKKLLWLNFIYAFFWNIWLERNARIFTEKSHNI 310
+ P + +++ + G ++ +LW A W +W ERNARIF +KS N
Sbjct: 1234 LTKIDWVPPRSVFDMISINFNGFGSSKRGIVLWQAACIAILWVVWRERNARIFEDKSRNS 1293
Query: 311 DAIMDIMRF 317
+ + D++ F
Sbjct: 1294 ENLWDMIHF 1301
BLAST of Lag0030715 vs. ExPASy TrEMBL
Match:
A0A438BVX7 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1293 PE=4 SV=1)
HSP 1 Score: 177.6 bits (449), Expect = 1.6e-40
Identity = 100/309 (32.36%), Postives = 152/309 (49.19%), Query Frame = 0
Query: 11 ALWRMIIASKYGVSTNNFKSGARSMHSSKGPWKAIHGLQPLLSNHIDFIVGKGDKAMSWE 70
ALW +I S Y TN + + S + PWKAI + S F+VG GD+ WE
Sbjct: 378 ALWHQVILSIYESHTNGWDANTVVRWSHRCPWKAIAQVFQDFSKFTRFMVGDGDRIRFWE 437
Query: 71 DKWIGPSCLQSSFPLLYSLSLHKESCVADCWIESSR--AWNLHPRRHLNDEETAEWATLS 130
D W G L FP L + + K ++ + S+R +WN + RR+L+D E E +L
Sbjct: 438 DLWWGDQSLGVRFPRLLRVVMDKNIPISSI-LGSTRPFSWNFNFRRNLSDSEIEEVESLM 497
Query: 131 QLLSTFTFIDR-EDYWSWNLEKSGVFSTNSLTKRLASQEPHTSTSLYGQLWKGPMPKKVK 190
Q L D SW+L SG+F+ S L+ S +W +P K+K
Sbjct: 498 QSLDHIHLSPSVPDKRSWSLSSSGLFTVKSFFLALSQISSLPSVFPTKLVWNSQVPFKIK 557
Query: 191 FFIWELSHLCINTADVIQRKHPWQTLSPTCCCICYKANESQIHLFSQCSFATAFWEHLQQ 250
F+W ++H +NT D++Q + P++ LSP C +C + E++ HLF CS W L Q
Sbjct: 558 SFVWLVAHKKVNTNDMLQLRRPYKALSPDICMLCMEQGETEDHLFLHCSLTMGLWHRLFQ 617
Query: 251 AFGWTYTRPGDITSLLNSSIVGHPFTREKKLLWLNFIYAFFWNIWLERNARIFTEKSHNI 310
+ P I +L+++ G ++ +LW A W +W ERNARIF +KS N
Sbjct: 618 LTKIDWVPPRSICDMLSTNFNGFGSSKRGIILWQAACIALLWVVWRERNARIFEDKSRNS 677
Query: 311 DAIMDIMRF 317
+ + D++ F
Sbjct: 678 ENLWDMIHF 685
BLAST of Lag0030715 vs. TAIR 10
Match:
AT3G09510.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 55.8 bits (133), Expect = 1.3e-07
Identity = 57/235 (24.26%), Postives = 87/235 (37.02%), Query Frame = 0
Query: 111 HPRRHLNDEETAEWATLSQLL------------STFTFIDREDYW--------------- 170
HP R LN EET + T++ L F+D+ D+
Sbjct: 59 HPPRPLNTEETYKEMTINNLFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDK 118
Query: 171 -SWNLEKSGVFSTNS---------LTKRLASQEPHTSTSLYGQLWKGPMPKKVKFFIWEL 230
WN +G ++ S T A PH S L ++W P+ K+K F+W
Sbjct: 119 IIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRA 178
Query: 231 SHLCINTADVIQRKHPWQTLSPTCCCICYKANESQIHLFSQCSFATAFWEHLQQAFGWTY 290
+ T + + + + P+ C C++ NES H C FAT W +
Sbjct: 179 LSQALATTERLTTR--GMRIDPS-CPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQ 238
Query: 291 TRPGD----ITSLLNSSIVGHPFTREKKLL--WLNFIYAFFWNIWLERNARIFTE 303
D I+++LN + + KLL WL W IW RN +F +
Sbjct: 239 LMSNDFEENISNILN-FVQDTTMSDFHKLLPVWL------IWRIWKARNNVVFNK 283
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0044556.1 | 1.8e-43 | 36.30 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0041397.1 | 4.1e-43 | 36.30 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0039950.1 | 5.9e-42 | 34.32 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... | [more] |
CAN68165.1 | 1.9e-40 | 32.04 | hypothetical protein VITISV_008538 [Vitis vinifera] | [more] |
RVW15141.1 | 3.2e-40 | 32.36 | putative ribonuclease H protein [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TR15 | 8.8e-44 | 36.30 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TIB8 | 2.0e-43 | 36.30 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7T9I7 | 2.8e-42 | 34.32 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A5BPI6 | 9.2e-41 | 32.04 | Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_008538 PE=4 SV=1 | [more] |
A0A438BVX7 | 1.6e-40 | 32.36 | Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_1293 ... | [more] |
Match Name | E-value | Identity | Description | |
AT3G09510.1 | 1.3e-07 | 24.26 | Ribonuclease H-like superfamily protein | [more] |