Lag0030699 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0030699
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RRM domain-containing protein
Location	chr11: 530996 .. 533832 (-)
RNA-Seq Expression	Lag0030699
Synteny	Lag0030699

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATGGTATATTCCTGATCCTCTTTTTTATTCATCCACTTCCTTTTGACTGTTTATTCTTTTAGTATTTGAGTCTAAATATCATATCTTATATACACATATTTTTTTTCTTTTTCATTTTATGAGTGTTTTGAATCCCTAATTTTTGGTGTCTGGATAATAGCTACTTCACATTTTATGCTTGTAAAATTTTATCATCTTCTGGTGTTTCCTACTAGATATTTTTACCAGTTTAATTTTAATGGATACAGAATCTTAAGTCCGCAACATCCTCCCTGGAATTAAGTTTGGATGCTAACTATTATTGATTAAGATCATCATGAACCTTAAGGCTGTGCCTGATTTGTTGGTTATGCACATTATTTATTATTATTATTATTATTATTTGGAGGAAACAATAGATTTCATTGATAAATGAAATATACAAAAGGAAGGGATACCTCAGCCACCAAAGGTGGATTACAAAAACTGAAAAAAGACCTCCAGTCGGAGTCGGCAACCAAGGTAGGAAGACTATACAATTAGTGAAAGGGGGAGCATTTACACCAAAATAAAGCAGTACAAAGAGAGTTTTCTCTAGGAATCAATAGATATCAATGAACTCATAGTTGAATATTCGGTTGTTTCTTTCTCTCCAAAAGGTTCCATAGAAAGGCTTGAATGATGGCCAATCATAGAAGCTTCTTCTTTCCTCTGAATGGGTGTCACATGAAGATGAGAGCAAGCCACCAGCATTGTATTCCAGAAATTTCTAGCATATGAGCAGTGGAACAAAAAGATGGCACTGAGATTCCATGTCTTTCAGACACACATGACAACAAATAGGAGACGAAAAGAAGCAGGGCAATCTTTTTTGTAGTCTATTAGCAGTACTTAGTCCACCATGGCTAAGCTCCCAAATAAAGGTCTTGATCTTCTTTGGATATGAACCTTTCCAAATGACCTTGTAAAAGGATTTTTGTTTAAACCCACCGAGCAAGAAATGTCCATCAATGAATGGTAAACTTTTAAACTTTTTACTAGATTTTTCTCCAGACCAAGGTCGCTTGTTAGCATTAATGAAATGTTTGCTTGCTTCATTACAAAAGAGTATTGTTGTGAAGGTTGAGGACATTAGACGTTATTTGTCTGACAATTAGCCCTTATGCAAGGTGGTGATGAAGGTTTTGGCTGAAAAATAAATTGTCACTCCCTTGATGCACTCCCATAGATTATCACCATTCCAAATGGAGAATGTATTAGAGATGGTGCCTTCATCTTTACAGACTTGTTTATCATTCTTAATGGGAAGCCAAGAGGGAGCTTGTGTCCACTAGAGGGTCGAGTCAGGCTGGCCAGCTTGTTTGACTGAACGATATTTTTAGGAACTTCAGAGACAAATTTCATTCTGGGCTTTGATGGGAGGTTGAGTAGAAAGAAATAAGGGAACATTTGATGGTGAATACGAGGAACTTACAAATCTTTGGGAAAACACTACTTTTCTTGCTTCTTTTTGGAGTTCTTGTCCAAAACATTTTGTAACCATTTTCTCTCCCTTTTCAACACTAATTGGAGTGTCTTCTTGTATGGTCCTAGAACCAGCCCCTGCTACAAAAGTAGTAGTAGTAGCAGTAGTACAACAACAGCAGCAACAAGACAATAGAAAAAGAAGAAAAAAGTCATCTCAGGTGGAGAATGCTAGTTGAAGTCAGATCCTAAGAACAGTCTTCTGGTTGGTATTTGATTCTTTGTCCACCAAGTCTTGTAGGCTTATCCATCGGCATCCAGCCTGACACACTCACATTATTCTATACTACAACCATATACATTATGGTAATATATTGGATAAGAACCTTTCAACAATATGTTCATTTCTCGAGCCTTAATGTGCTTAGTCTGGTCATTTATTGTTTCCACTTGTGAATTCTCTATTAATATTATATATAAGGTTAAAATATAAGTTCAATTTAATACGTCCACGCAGGTTCTGGATTTCTGGAGTATATTTTTTTGTGAAAAGCCTATAATTTATAAAATTGACAACTTTCTTGTTTCTGATGGGTGGAACTTGAAGGGAGGTTCTGGGGACTTTTTTTTTCCCTTTCTTTTCTAGCTGTCACGATGTAATACTATCTTTGATTTCATGGAATGACCGGCGCAGGATTCAAGTGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGTAATCTTGACCTCAGAATTACAGAGTAAGGAAAATTATTGTCCCCGAATTTTTAATGTAATTGTCTTCCAGTTTTCCTTTTCTATATTGACGTTTGTATCAACTTGTTTCAGAGCAACTCTCATTAAAATGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACTCGTGGTCCAAAGCGTGGAGAGCCACGGGGATTTGCTTTCATTGAATACAGCTCCAAGGAGGTAAGTTGCATGGTTTACTACTCCATAGCCTCTGTCAAGCAATTCCTTATTTTTGCTTGTAAAGTGAGTATGCAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTTGTGGTCGTCCATTGGTCGTACGCCTTGCGAGCGAGAAGTTCATGATCAACACAACAGATAATACTTCAAGAGCAGCAGGCGAGTCGAGCAAACTGAGACTCGGTGGCAGCAATTTTGGACAGATGAATTATGGCCAGATGACTCGCAGCGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTTTGGAAGGAGGTGGGGAGAGCTCTAGTGTGAAAAAACAGAAGCAAGATCACGTCAGTTGCAGAGGTAATATTGATAAGTCATCGCTCAAAACAACATCTTGA

mRNA sequence

ATGGTTATGGATTCAAGTGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGTAATCTTGACCTCAGAATTACAGAAGCAACTCTCATTAAAATGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACTCGTGGTCCAAAGCGTGGAGAGCCACGGGGATTTGCTTTCATTGAATACAGCTCCAAGGAGGTAAGTTGCATGGTTTACTACTCCATAGCCTCTGTCAAGCAATTCCTTATTTTTGCTTGTAAAGTGAGTATGCAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTTGTGGTCGTCCATTGGTCGTACGCCTTGCGAGCGAGAAGTTCATGATCAACACAACAGATAATACTTCAAGAGCAGCAGGCGAGTCGAGCAAACTGAGACTCGGTGGCAGCAATTTTGGACAGATGAATTATGGCCAGATGACTCGCAGCGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTTTGGAAGGAGGTGGGGAGAGCTCTAGTGTGAAAAAACAGAAGCAAGATCACGTCAGTTGCAGAGGTAATATTGATAAGTCATCGCTCAAAACAACATCTTGA

Coding sequence (CDS)

ATGGTTATGGATTCAAGTGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGTAATCTTGACCTCAGAATTACAGAAGCAACTCTCATTAAAATGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACTCGTGGTCCAAAGCGTGGAGAGCCACGGGGATTTGCTTTCATTGAATACAGCTCCAAGGAGGTAAGTTGCATGGTTTACTACTCCATAGCCTCTGTCAAGCAATTCCTTATTTTTGCTTGTAAAGTGAGTATGCAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTTGTGGTCGTCCATTGGTCGTACGCCTTGCGAGCGAGAAGTTCATGATCAACACAACAGATAATACTTCAAGAGCAGCAGGCGAGTCGAGCAAACTGAGACTCGGTGGCAGCAATTTTGGACAGATGAATTATGGCCAGATGACTCGCAGCGATAAAATTGCTGCCATAAAGAATAAATTGAGAGCTTTGGAAGGAGGTGGGGAGAGCTCTAGTGTGAAAAAACAGAAGCAAGATCACGTCAGTTGCAGAGGTAATATTGATAAGTCATCGCTCAAAACAACATCTTGA

Protein sequence

MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEKFMINTTDNTSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVKKQKQDHVSCRGNIDKSSLKTTS

Homology

[Close]

BLAST of Lag0030699 vs. NCBI nr
Match: XP_031741097.1 (probable RNA-binding protein 18 isoform X1 [Cucumis sativus])

HSP 1 Score: 325.1 bits (832), Expect = 4.3e-85
Identity = 169/199 (84.92%), Postives = 180/199 (90.45%), Query Frame = 0


Query: 3   MDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 62
           MDS+GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 1   MDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 60

Query: 63  FIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEK 122
           FIEYSSKEVSC+VY  IASVKQ LIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEK
Sbjct: 61  FIEYSSKEVSCLVYSLIASVKQLLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEK 120

Query: 123 FMINTTDNTSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVK 182
            M NTT++TSR A ES K RLGGS     +YGQ+TRSDKIAAIKNKLRALEGGGESSSVK
Sbjct: 121 LMTNTTNDTSRTASESRKSRLGGS-----SYGQLTRSDKIAAIKNKLRALEGGGESSSVK 180

Query: 183 KQKQDHVSCRGNIDKSSLK 202
           K KQD++S + + DKSSLK
Sbjct: 181 KPKQDNISYKDHNDKSSLK 194

[Close]

BLAST of Lag0030699 vs. NCBI nr
Match: XP_022157813.1 (probable RNA-binding protein 18 isoform X3 [Momordica charantia])

HSP 1 Score: 282.0 bits (720), Expect = 4.2e-72
Identity = 158/205 (77.07%), Postives = 164/205 (80.00%), Query Frame = 0


Query: 1   MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60
           MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG
Sbjct: 1   MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60

Query: 61  FAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLAS 120
           FAFIEYSSKE                         EAKLAKEKMHGKLACGRPLVVRLAS
Sbjct: 61  FAFIEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLAS 120

Query: 121 EKFMINTTDNTSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSS 180
           EK MI+TT + SRAAGESSK RLGGS     NYGQMTR+DKIAAIKNKLRALEG  ESSS
Sbjct: 121 EKCMIDTTKSISRAAGESSKSRLGGS-----NYGQMTRTDKIAAIKNKLRALEGEAESSS 174

Query: 181 --VKKQKQDHVSCRGNIDKSSLKTT 204
             VKKQKQD++SCR NIDK  LKT+
Sbjct: 181 SRVKKQKQDNISCRDNIDK-PLKTS 174

[Close]

BLAST of Lag0030699 vs. NCBI nr
Match: XP_022157798.1 (probable RNA-binding protein 18 isoform X1 [Momordica charantia] >XP_022157801.1 probable RNA-binding protein 18 isoform X1 [Momordica charantia])

HSP 1 Score: 282.0 bits (720), Expect = 4.2e-72
Identity = 158/205 (77.07%), Postives = 164/205 (80.00%), Query Frame = 0


Query: 1   MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60
           MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG
Sbjct: 50  MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 109

Query: 61  FAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLAS 120
           FAFIEYSSKE                         EAKLAKEKMHGKLACGRPLVVRLAS
Sbjct: 110 FAFIEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLAS 169

Query: 121 EKFMINTTDNTSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSS 180
           EK MI+TT + SRAAGESSK RLGGS     NYGQMTR+DKIAAIKNKLRALEG  ESSS
Sbjct: 170 EKCMIDTTKSISRAAGESSKSRLGGS-----NYGQMTRTDKIAAIKNKLRALEGEAESSS 223

Query: 181 --VKKQKQDHVSCRGNIDKSSLKTT 204
             VKKQKQD++SCR NIDK  LKT+
Sbjct: 230 SRVKKQKQDNISCRDNIDK-PLKTS 223

[Close]

BLAST of Lag0030699 vs. NCBI nr
Match: XP_008437528.1 (PREDICTED: probable RNA-binding protein 18 [Cucumis melo])

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-70
Identity = 148/201 (73.63%), Postives = 161/201 (80.10%), Query Frame = 0


Query: 3   MDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 62
           MDS+GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 1   MDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 60

Query: 63  FIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEK 122
           FIEYSSKE                         EAKLAKEKMHGKLACGRPLVVRLASEK
Sbjct: 61  FIEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLASEK 120

Query: 123 FMINTTDNTSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVK 182
            M+NT ++TS+AA ES K RLGGS     +YGQ+TRSDKIAAIKNKLRALEGGGESSSVK
Sbjct: 121 LMVNTANDTSKAASESRKSRLGGS-----SYGQLTRSDKIAAIKNKLRALEGGGESSSVK 171

Query: 183 KQKQDHVSCRGNIDKSSLKTT 204
           K KQD++S + +IDKS LKT+
Sbjct: 181 KPKQDNISFKDHIDKSFLKTS 171

[Close]

BLAST of Lag0030699 vs. NCBI nr
Match: XP_022157809.1 (probable RNA-binding protein 18 isoform X2 [Momordica charantia])

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-70
Identity = 155/202 (76.73%), Postives = 161/202 (79.70%), Query Frame = 0


Query: 4   DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 63
           DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 22  DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 81

Query: 64  IEYSSKEVSCMVYYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEKF 123
           IEYSSKE                         EAKLAKEKMHGKLACGRPLVVRLASEK 
Sbjct: 82  IEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLASEKC 141

Query: 124 MINTTDNTSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSS--V 183
           MI+TT + SRAAGESSK RLGGS     NYGQMTR+DKIAAIKNKLRALEG  ESSS  V
Sbjct: 142 MIDTTKSISRAAGESSKSRLGGS-----NYGQMTRTDKIAAIKNKLRALEGEAESSSSRV 192

Query: 184 KKQKQDHVSCRGNIDKSSLKTT 204
           KKQKQD++SCR NIDK  LKT+
Sbjct: 202 KKQKQDNISCRDNIDK-PLKTS 192

[Close]

BLAST of Lag0030699 vs. ExPASy Swiss-Prot
Match: Q6PBM8 (Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.3e-11
Identity = 50/159 (31.45%), Postives = 81/159 (50.94%), Query Frame = 0


Query: 16  KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMV 75
           +L+IGN+D +ITE  L+K+   FGK+   DFL+H  GP  G+PRG+ F+ + +KE     
Sbjct: 24  RLWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKE----- 83

Query: 76  YYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLA-SEKFMINTTDNTSRA 135
                               EA+ A + ++GKLA  + LVVR A +++F     +    A
Sbjct: 84  --------------------EAERAIQCLNGKLALSKKLVVRWAHAQRFEPFRGEKNMPA 143

Query: 136 AGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALE 174
           + E S      S+  +     ++ + KI AI+ KL+ +E
Sbjct: 144 SLEPS------SSEAEDLPTSLSVNAKIRAIEAKLQMME 151

[Close]

BLAST of Lag0030699 vs. ExPASy Swiss-Prot
Match: Q9CR83 (Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-10
Identity = 38/104 (36.54%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 16  KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMV 75
           +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K      
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETK------ 85

Query: 76  YYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLA 120
                              QEA+ A + ++GKLA  + LVVR A
Sbjct: 86  -------------------QEAEQAIQCLNGKLALSKKLVVRWA 104

[Close]

BLAST of Lag0030699 vs. ExPASy Swiss-Prot
Match: Q96H35 (Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-10
Identity = 47/157 (29.94%), Postives = 77/157 (49.04%), Query Frame = 0


Query: 16  KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMV 75
           +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K      
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETK------ 85

Query: 76  YYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEKFMINTTDNTSRAA 135
                              QEA+ A + ++GKLA  + LVVR A  +  +   D+     
Sbjct: 86  -------------------QEAEQAIQCLNGKLALSKKLVVRWAHAQ--VKRYDHNKN-- 145

Query: 136 GESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRAL 173
            +   + L  S+  +     ++ + KI AI+ KL+ +
Sbjct: 146 DKILPISLEPSSSTEPTQSNLSVTAKIKAIEAKLKMM 153

[Close]

BLAST of Lag0030699 vs. ExPASy Swiss-Prot
Match: Q5R6W3 (Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-10
Identity = 47/157 (29.94%), Postives = 77/157 (49.04%), Query Frame = 0


Query: 16  KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMV 75
           +L+IGNLD +ITE  L+K+   FGK+   DFL+H  G   G+PRG+ F+ + +K      
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETK------ 85

Query: 76  YYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEKFMINTTDNTSRAA 135
                              QEA+ A + ++GKLA  + LVVR A  +  +   D+     
Sbjct: 86  -------------------QEAEQAIQCLNGKLALSKKLVVRWAHAQ--VKRYDHNKN-- 145

Query: 136 GESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRAL 173
            +   + L  S+  +     ++ + KI AI+ KL+ +
Sbjct: 146 DKILPISLEPSSSTEPTQSNLSVTAKIKAIEAKLKMM 153

[Close]

BLAST of Lag0030699 vs. ExPASy Swiss-Prot
Match: Q66J99 (Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.1e-10
Identity = 57/193 (29.53%), Postives = 89/193 (46.11%), Query Frame = 0


Query: 16  KLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCMV 75
           +L+IGN+D +ITE  L+K+   FGK+   DFL+H  GP  G+PRG+ F+ + +K      
Sbjct: 26  RLWIGNVDPKITEYHLLKLLQKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFETK------ 85

Query: 76  YYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEKFMINTTDNTSRAA 135
                               EA+ A   ++GK+A  + LVVR A  +  I   DN     
Sbjct: 86  -------------------AEAERAIHCLNGKMALSKKLVVRWAHAQ--IKRYDNCKNE- 145

Query: 136 GESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGG------GESSSVKKQKQDHV 195
            +   + L  S+  +     ++ S KI AI+ KL+ +         G+SS    +  +  
Sbjct: 146 -KVLPISLEPSSSTEPTQSTLSVSAKIKAIEAKLKMMAENPDPLLPGQSSYSYFKANEKK 188

Query: 196 SCRGNIDKSSLKT 203
            C     KSSLK+
Sbjct: 206 KCT-PYHKSSLKS 188

[Close]

BLAST of Lag0030699 vs. ExPASy TrEMBL
Match: A0A6J1DUC5 (probable RNA-binding protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.0e-72
Identity = 158/205 (77.07%), Postives = 164/205 (80.00%), Query Frame = 0


Query: 1   MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60
           MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG
Sbjct: 50  MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 109

Query: 61  FAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLAS 120
           FAFIEYSSKE                         EAKLAKEKMHGKLACGRPLVVRLAS
Sbjct: 110 FAFIEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLAS 169

Query: 121 EKFMINTTDNTSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSS 180
           EK MI+TT + SRAAGESSK RLGGS     NYGQMTR+DKIAAIKNKLRALEG  ESSS
Sbjct: 170 EKCMIDTTKSISRAAGESSKSRLGGS-----NYGQMTRTDKIAAIKNKLRALEGEAESSS 223

Query: 181 --VKKQKQDHVSCRGNIDKSSLKTT 204
             VKKQKQD++SCR NIDK  LKT+
Sbjct: 230 SRVKKQKQDNISCRDNIDK-PLKTS 223

[Close]

BLAST of Lag0030699 vs. ExPASy TrEMBL
Match: A0A6J1DUD9 (probable RNA-binding protein 18 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.0e-72
Identity = 158/205 (77.07%), Postives = 164/205 (80.00%), Query Frame = 0


Query: 1   MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60
           MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG
Sbjct: 1   MVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRG 60

Query: 61  FAFIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLAS 120
           FAFIEYSSKE                         EAKLAKEKMHGKLACGRPLVVRLAS
Sbjct: 61  FAFIEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLAS 120

Query: 121 EKFMINTTDNTSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSS 180
           EK MI+TT + SRAAGESSK RLGGS     NYGQMTR+DKIAAIKNKLRALEG  ESSS
Sbjct: 121 EKCMIDTTKSISRAAGESSKSRLGGS-----NYGQMTRTDKIAAIKNKLRALEGEAESSS 174

Query: 181 --VKKQKQDHVSCRGNIDKSSLKTT 204
             VKKQKQD++SCR NIDK  LKT+
Sbjct: 181 SRVKKQKQDNISCRDNIDK-PLKTS 174

[Close]

BLAST of Lag0030699 vs. ExPASy TrEMBL
Match: A0A6J1DXL8 (probable RNA-binding protein 18 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 8.6e-71
Identity = 155/202 (76.73%), Postives = 161/202 (79.70%), Query Frame = 0


Query: 4   DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 63
           DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 22  DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 81

Query: 64  IEYSSKEVSCMVYYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEKF 123
           IEYSSKE                         EAKLAKEKMHGKLACGRPLVVRLASEK 
Sbjct: 82  IEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLASEKC 141

Query: 124 MINTTDNTSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSS--V 183
           MI+TT + SRAAGESSK RLGGS     NYGQMTR+DKIAAIKNKLRALEG  ESSS  V
Sbjct: 142 MIDTTKSISRAAGESSKSRLGGS-----NYGQMTRTDKIAAIKNKLRALEGEAESSSSRV 192

Query: 184 KKQKQDHVSCRGNIDKSSLKTT 204
           KKQKQD++SCR NIDK  LKT+
Sbjct: 202 KKQKQDNISCRDNIDK-PLKTS 192

[Close]

BLAST of Lag0030699 vs. ExPASy TrEMBL
Match: A0A1S3ATX2 (probable RNA-binding protein 18 OS=Cucumis melo OX=3656 GN=LOC103482914 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 8.6e-71
Identity = 148/201 (73.63%), Postives = 161/201 (80.10%), Query Frame = 0


Query: 3   MDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 62
           MDS+GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 1   MDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 60

Query: 63  FIEYSSKEVSCMVYYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEK 122
           FIEYSSKE                         EAKLAKEKMHGKLACGRPLVVRLASEK
Sbjct: 61  FIEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLASEK 120

Query: 123 FMINTTDNTSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVK 182
            M+NT ++TS+AA ES K RLGGS     +YGQ+TRSDKIAAIKNKLRALEGGGESSSVK
Sbjct: 121 LMVNTANDTSKAASESRKSRLGGS-----SYGQLTRSDKIAAIKNKLRALEGGGESSSVK 171

Query: 183 KQKQDHVSCRGNIDKSSLKTT 204
           K KQD++S + +IDKS LKT+
Sbjct: 181 KPKQDNISFKDHIDKSFLKTS 171

[Close]

BLAST of Lag0030699 vs. ExPASy TrEMBL
Match: A0A5A7TLJ6 (Putative RNA-binding protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00930 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 3.3e-70
Identity = 147/200 (73.50%), Postives = 160/200 (80.00%), Query Frame = 0


Query: 4   DSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAF 63
           DS+GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 34  DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 93

Query: 64  IEYSSKEVSCMVYYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEKF 123
           IEYSSKE                         EAKLAKEKMHGKLACGRPLVVRLASEK 
Sbjct: 94  IEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLASEKL 153

Query: 124 MINTTDNTSRAAGESSKLRLGGSNFGQMNYGQMTRSDKIAAIKNKLRALEGGGESSSVKK 183
           M+NT ++TS+AA ES K RLGGS     +YGQ+TRSDKIAAIKNKLRALEGGGESSSVKK
Sbjct: 154 MVNTANDTSKAASESRKSRLGGS-----SYGQLTRSDKIAAIKNKLRALEGGGESSSVKK 203

Query: 184 QKQDHVSCRGNIDKSSLKTT 204
            KQD++S + +IDKS LKT+
Sbjct: 214 PKQDNISFKDHIDKSFLKTS 203

[Close]

BLAST of Lag0030699 vs. TAIR 10
Match: AT5G52545.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-11
Identity = 41/83 (49.40%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 104 MHGKLACGRPLVVRLASEKFMINTT-DNTSRAAGESSKLRLGGSNFGQMNYGQMTRSDKI 163
           MHG+LACGRPLVVRLASEK + +++ D++ R+  E ++ R    +    + GQM+R +K+
Sbjct: 1   MHGRLACGRPLVVRLASEKHLEDSSHDHSKRSLPEGNRTRFVNGS----SSGQMSRDEKV 60

Query: 164 AAIKNKLRALEGGGESSSVKKQK 186
            AIKNKL+ALE   E    KKQK
Sbjct: 61  TAIKNKLKALE-EDEKRDPKKQK 78

[Close]

BLAST of Lag0030699 vs. TAIR 10
Match: AT5G03580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 52.4 bits (124), Expect = 5.1e-07
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 0


Query: 15 SKLYIGNLDLRITEATLIKMFSPFGKII----SEDFLWHTRGPKRGEPRGFAFIEYSSKE 71
          + LYI NLD +++E  L  MFS FGK+I    ++DF        RGE RGFAFIE+ S +
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDF--------RGESRGFAFIEFESAD 68

[Close]

BLAST of Lag0030699 vs. TAIR 10
Match: AT3G16380.1 (poly(A) binding protein 6 )

HSP 1 Score: 46.6 bits (109), Expect = 2.8e-05
Identity = 30/108 (27.78%), Postives = 49/108 (45.37%), Query Frame = 0


Query: 15  SKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCM 74
           S LY+ NL   + E  L ++F  +G+I+S   + H    + G  +GF F+          
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH----ENGRSKGFGFV---------- 363

Query: 75  VYYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEK 123
                          C  + +E+K AK  ++G L  G+P+VVR+A  K
Sbjct: 364 ---------------CFSNCEESKQAKRYLNGFLVDGKPIVVRVAERK 382

[Close]

BLAST of Lag0030699 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.8e-04
Identity = 31/109 (28.44%), Postives = 44/109 (40.37%), Query Frame = 0


Query: 14  ESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSC 73
           ++KLY+  L  R TE TL   F  FG +I  + +          P+GFAF+ Y ++E   
Sbjct: 76  KTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMV---MDKVANRPKGFAFLRYETEE--- 135

Query: 74  MVYYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEK 123
                                 EA  A + MHGK   GR + V  A  +
Sbjct: 136 ----------------------EAMKAIQGMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of Lag0030699 vs. TAIR 10
Match: AT2G36660.1 (poly(A) binding protein 7 )

HSP 1 Score: 41.6 bits (96), Expect = 8.9e-04
Identity = 30/108 (27.78%), Postives = 51/108 (47.22%), Query Frame = 0


Query: 15  SKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEVSCM 74
           S +Y+ N+++ +TE  L K FS  G I S   +      ++G+ +GF F+ +S+ E    
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMC----DEKGKSKGFGFVCFSTPE---- 363

Query: 75  VYYSIASVKQFLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEK 123
              +I +VK F                   HG++  G+PL V +A +K
Sbjct: 364 --EAIDAVKTF-------------------HGQMFHGKPLYVAIAQKK 382

The following BLAST results are available for this feature:

BLAST of Lag0030699 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031741097.1	4.3e-85	84.92	probable RNA-binding protein 18 isoform X1 [Cucumis sativus]	[more]
XP_022157813.1	4.2e-72	77.07	probable RNA-binding protein 18 isoform X3 [Momordica charantia]	[more]
XP_022157798.1	4.2e-72	77.07	probable RNA-binding protein 18 isoform X1 [Momordica charantia] >XP_022157801.1...	[more]
XP_008437528.1	1.8e-70	73.63	PREDICTED: probable RNA-binding protein 18 [Cucumis melo]	[more]
XP_022157809.1	1.8e-70	76.73	probable RNA-binding protein 18 isoform X2 [Momordica charantia]	[more]

BLAST of Lag0030699 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PBM8	4.3e-11	31.45	Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1	[more]
Q9CR83	1.3e-10	36.54	Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1	[more]
Q96H35	2.8e-10	29.94	Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1	[more]
Q5R6W3	2.8e-10	29.94	Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1	[more]
Q66J99	8.1e-10	29.53	Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1	[more]

BLAST of Lag0030699 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUC5	2.0e-72	77.07	probable RNA-binding protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DUD9	2.0e-72	77.07	probable RNA-binding protein 18 isoform X3 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DXL8	8.6e-71	76.73	probable RNA-binding protein 18 isoform X2 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A1S3ATX2	8.6e-71	73.63	probable RNA-binding protein 18 OS=Cucumis melo OX=3656 GN=LOC103482914 PE=4 SV=...	[more]
A0A5A7TLJ6	3.3e-70	73.50	Putative RNA-binding protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of Lag0030699 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52545.1	2.0e-11	49.40	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G03580.1	5.1e-07	46.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G16380.1	2.8e-05	27.78	poly(A) binding protein 6	[more]
AT1G73530.1	1.8e-04	28.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G36660.1	8.9e-04	27.78	poly(A) binding protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 16..93 e-value: 2.4E-8 score: 43.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 17..70 e-value: 4.3E-8 score: 32.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 15..121 score: 13.685991
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 12..128 e-value: 7.7E-19 score: 69.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..194
None	No IPR available	PANTHER	PTHR21245:SF2	RNA-BINDING PROTEIN 18-RELATED	coord: 10..188
None	No IPR available	PANTHER	PTHR21245	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	coord: 10..188
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 15..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0030699.1	Lag0030699.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding