Lag0030669 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0030669
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description60S ribosomal protein L36
Locationchr11: 290370 .. 291384 (+)
RNA-Seq ExpressionLag0030669
SyntenyLag0030669
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCTGGAAGTATGCATGGTTATTGATTGATTTAAACTCAGTTTTAGTTACAAAGATCAAATATCAGGAGTCTTGTTTCGTTCTTTGCTTATTTCAAAATCAACTCTTGTAGAGTCTTGTAGTGTTAGGGTTTTGCAATTAGACTTAATTTTGATGTAGTAAACTGATTGCTTTTTATTGAAACAGGTAATGGCTCCAAAACAGCCAAATACAGGCCTTTTTGTTGGCCTGAACAAGGGCCATATAGTCACCAAGAAGGAGCTGGCCCCTCGGCCCTCTGATCGCAAAGGAGTAAGTCGATCGACATATAGCTAGATATTTTAGAATTCTTTTCAATGATGGAAGGGAGGCATTGGGTTTTCTCTGTTTTAATGTGTTCTTTCTTGGGCATGGTAGCTTTTTAGGAGCTTGAGGAATGAGCTAATTTTATTTCATCTGATTGGACCAATTATGAGCTATAGTTGCATGCTTTAGTTTTAACATCATTCTTAAAAGGTCTTGTTATATCTAGTTATCGATTACATCATCTTTTTGCAACATGTGAGATTGTTTTCTCAATTTTCTGTTTTCATACAAATTAATGTAGAAAACGAGTAAGAGGGTTCTCTTTGTCCGGAGCTTGATCCGCGAAGTTGCTGGTTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAAGTTGGAAAAGACAAGCGTGCTCTGAAGGTAGCCAAGAGAAAGCTTGGAACTCACAAGAGAGCTAAGAAAAAGCGTGAGGAGATGTCCAATGTTCTAAGAAAGATGAGGTAATCTTTTAATATATCTTTTAAGGCAAATCTTTTTTTTTTTTTTTAAACGTTGGGGATGAATCATGTTCGGTTTGTGTGAAAGTCAGAAGGTTCACATTTGGATATGTTGTGAGTGGCAACGTCATGAGGAAGTAGTATGATTAGCGTTCTGATTTCATTTCTGGATCTGTTTTTTTTTTTTTTTTTTTGCAGGGCTGGTGGAGGTGCTGAGAAGAAGAAGTGA

mRNA sequence

ATGTGGCTGGAAGTAATGGCTCCAAAACAGCCAAATACAGGCCTTTTTGTTGGCCTGAACAAGGGCCATATAGTCACCAAGAAGGAGCTGGCCCCTCGGCCCTCTGATCGCAAAGGAAAAACGAGTAAGAGGGTTCTCTTTGTCCGGAGCTTGATCCGCGAAGTTGCTGGTTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAAGTTGGAAAAGACAAGCGTGCTCTGAAGGTAGCCAAGAGAAAGCTTGGAACTCACAAGAGAGCTAAGAAAAAGCGTGAGGAGATGTCCAATGTTCTAAGAAAGATGAGGGCTGGTGGAGGTGCTGAGAAGAAGAAGTGA

Coding sequence (CDS)

ATGTGGCTGGAAGTAATGGCTCCAAAACAGCCAAATACAGGCCTTTTTGTTGGCCTGAACAAGGGCCATATAGTCACCAAGAAGGAGCTGGCCCCTCGGCCCTCTGATCGCAAAGGAAAAACGAGTAAGAGGGTTCTCTTTGTCCGGAGCTTGATCCGCGAAGTTGCTGGTTTTGCCCCATATGAGAAGAGAATCACTGAGCTTCTAAAAGTTGGAAAAGACAAGCGTGCTCTGAAGGTAGCCAAGAGAAAGCTTGGAACTCACAAGAGAGCTAAGAAAAAGCGTGAGGAGATGTCCAATGTTCTAAGAAAGATGAGGGCTGGTGGAGGTGCTGAGAAGAAGAAGTGA

Protein sequence

MWLEVMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGAEKKK
Homology
[Close]
BLAST of Lag0030669 vs. NCBI nr
Match: TKS09441.1 (60S ribosomal protein L36-3 [Populus alba])

HSP 1 Score: 208.8 bits (530), Expect = 2.6e-50
Identity = 110/112 (98.21%), Postives = 110/112 (98.21%), Query Frame = 0 

Query: 4   EVMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEK 63
           E MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEK
Sbjct: 11  EAMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEK 70

Query: 64  RITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGAEKKK 116
           RITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRA GGAEKKK
Sbjct: 71  RITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAAGGAEKKK 122

[Close]
BLAST of Lag0030669 vs. NCBI nr
Match: KAG6579388.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 208.0 bits (528), Expect = 4.4e-50
Identity = 109/112 (97.32%), Postives = 110/112 (98.21%), Query Frame = 0 

Query: 4   EVMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEK 63
           +VMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK SKRVLFVRSLIREVAGFAPYEK
Sbjct: 48  QVMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKASKRVLFVRSLIREVAGFAPYEK 107

Query: 64  RITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGAEKKK 116
           RITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGG EKKK
Sbjct: 108 RITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKK 159

[Close]
BLAST of Lag0030669 vs. NCBI nr
Match: KAF3946989.1 (hypothetical protein CMV_026816, partial [Castanea mollissima])

HSP 1 Score: 206.8 bits (525), Expect = 9.7e-50
Identity = 108/113 (95.58%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 3   LEVMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYE 62
           L+VMAPKQPNTGLFVG N+GHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYE
Sbjct: 8   LKVMAPKQPNTGLFVGANRGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYE 67

Query: 63  KRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGAEKKK 116
           KRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR+GGG EKKK
Sbjct: 68  KRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRSGGGGEKKK 120

[Close]
BLAST of Lag0030669 vs. NCBI nr
Match: XP_002305746.1 (60S ribosomal protein L36-2 [Populus trichocarpa] >XP_034920856.1 60S ribosomal protein L36-2-like [Populus alba] >KAF9857567.1 hypothetical protein H0E87_009749 [Populus deltoides] >KAG6778865.1 hypothetical protein POTOM_015214 [Populus tomentosa] >ABK94139.1 unknown [Populus trichocarpa] >ABK95527.1 unknown [Populus trichocarpa] >PNT39743.1 hypothetical protein POPTR_004G057000 [Populus trichocarpa])

HSP 1 Score: 206.5 bits (524), Expect = 1.3e-49
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0 

Query: 6   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 65
           MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 66  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGAEKKK 116
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRA GGAEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAAGGAEKKK 110

[Close]
BLAST of Lag0030669 vs. NCBI nr
Match: KAF4363927.1 (hypothetical protein G4B88_004227 [Cannabis sativa])

HSP 1 Score: 205.7 bits (522), Expect = 2.2e-49
Identity = 107/114 (93.86%), Postives = 110/114 (96.49%), Query Frame = 0 

Query: 2   WLEVMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPY 61
           W+ VMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRV FVR+LIREVAGFAPY
Sbjct: 11  WIIVMAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVHFVRNLIREVAGFAPY 70

Query: 62  EKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGAEKKK 116
           EKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMR+GG  EKKK
Sbjct: 71  EKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRSGGATEKKK 124

[Close]
BLAST of Lag0030669 vs. ExPASy Swiss-Prot
Match: Q9M352 (60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.7e-41
Identity = 90/112 (80.36%), Postives = 100/112 (89.29%), Query Frame = 0 

Query: 6   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 65
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGKTSKR +F+R+LI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 66  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGG--AEKKK 116
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+GGG   EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]
BLAST of Lag0030669 vs. ExPASy Swiss-Prot
Match: O80929 (60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 3.3e-40
Identity = 88/105 (83.81%), Postives = 97/105 (92.38%), Query Frame = 0 

Query: 13  TGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVG 72
           TGLFVGLNKGH+VT++ELAPRP+ RKGKTSKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 73  KDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGG---AEKK 115
           KDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+ GG   AEKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

[Close]
BLAST of Lag0030669 vs. ExPASy Swiss-Prot
Match: Q9LZ57 (60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-39
Identity = 86/104 (82.69%), Postives = 98/104 (94.23%), Query Frame = 0 

Query: 13  TGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVG 72
           TGLFVGLNKGH+VTK+E  PRP++RKGKTSKR +F+R+LI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 73  KDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGG-GAEKKK 116
           KDKRALKVAKRKLGTHKRAK+KREEMS+VLRKMR+GG GA +KK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKK 107

[Close]
BLAST of Lag0030669 vs. ExPASy Swiss-Prot
Match: P52866 (60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 6.0e-34
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 0 

Query: 6  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 65
          MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKR  FVR+LIREVAGF PYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 66 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 97
          TELLKVGKDKRALKV + K+G H +  K+ E
Sbjct: 61 TELLKVGKDKRALKVRQEKVG-HSQESKEEE 90

[Close]
BLAST of Lag0030669 vs. ExPASy Swiss-Prot
Match: Q9LRB8 (60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.9e-28
Identity = 68/96 (70.83%), Postives = 78/96 (81.25%), Query Frame = 0 

Query: 17  VGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKR 76
           VGLNKGH VTKK   PRPS RKG  S+RV  VR+++REVAG+APYE+R+ ELLKVGKDKR
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 77  ALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGAE 113
           ALK+ KRKLGTH R KKKREEM+ VLRKM+A    E
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101

The following BLAST results are available for this feature:
BLAST of Lag0030669 vs. NCBI nr
Match NameE-valueIdentityDescription
TKS09441.12.6e-5098.2160S ribosomal protein L36-3 [Populus alba][more]
KAG6579388.14.4e-5097.3260S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia][more]
KAF3946989.19.7e-5095.58hypothetical protein CMV_026816, partial [Castanea mollissima][more]
XP_002305746.11.3e-4999.0960S ribosomal protein L36-2 [Populus trichocarpa] >XP_034920856.1 60S ribosomal ... [more]
KAF4363927.12.2e-4993.86hypothetical protein G4B88_004227 [Cannabis sativa][more]
BLAST of Lag0030669 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9M3521.7e-4180.3660S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1[more]
O809293.3e-4083.8160S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1[more]
Q9LZ571.2e-3982.6960S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1[more]
P528666.0e-3483.5260S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2[more]
Q9LRB82.9e-2870.8360S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000509Ribosomal protein L36ePFAMPF01158Ribosomal_L36ecoord: 13..106
e-value: 3.9E-43
score: 145.6
IPR000509Ribosomal protein L36ePANTHERPTHR1011460S RIBOSOMAL PROTEIN L36coord: 5..115
IPR000509Ribosomal protein L36ePROSITEPS01190RIBOSOMAL_L36Ecoord: 60..70
IPR038097Ribosomal protein L36e domain superfamilyGENE3D1.10.10.176060S ribosomal protein L36coord: 5..113
e-value: 7.0E-45
score: 153.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..115
NoneNo IPR availablePANTHERPTHR10114:SF1460S RIBOSOMAL PROTEIN L36-1-RELATEDcoord: 5..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0030669.1Lag0030669.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002181 cytoplasmic translation
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome