Lag0030653 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0030653
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr11: 139813 .. 140373 (-)
RNA-Seq Expression	Lag0030653
Synteny	Lag0030653

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTCGATTTTGAAGGCTCACAAGATTTTTGGATTTCTCGATGGTTCGTCAGTCGCTCTGGCCGAATTTATCGAGGATAAACTTGCAAATGTCTCGTCTGTTGTACATGATGAGGATCTGATGATTTATGCTCTCAACGGCCTACCGGTTGATTACAACACTTTTCAAACATCAATGCGCACTCGTTCTGGTTCTGTGACTTTTGACGAACTTCATGTTCTCCTCAAGTCCGAGGAATCTGCACGGAGAAACAGTCCAAGCATGAGGATCTTACGGTTCAGCCAACAGCTATGCTTGCCTCTCAGAACTCTTCATCTCATAATGTTTCTAACTCAAATTCGTCCTTTTCTGGTGGCTTTCAAGGACGCGGAAGAGGTCGCAATTCAGGAAGAGGCAGATCCAATAATTTTTCACATCTTCCATCTTCTGGCTTCAGTCGTGGTCGTGGAGGATCTACTCCTGATGCTCGAGTTTCTTGCCAAATTTGTAATCGTCCTGGTCATCAGGCCCTTGACTGCTACTATCACTTCCAAGGACGACATCCTCCACCACAATTGA

mRNA sequence

ATGATGTCGATTTTGAAGGCTCACAAGATTTTTGGATTTCTCGATGGTTCGTCAGTCGCTCTGGCCGAATTTATCGAGGATAAACTTGCAAATGTCTCGTCTGTTGTACATGATGAGGATCTGATGATTTATGCTCTCAACGGCCTACCGGTTGATTACAACACTTTTCAAACATCAATGCGCACTCGTTCTGGTTCTGTGACTTTTGACGAACTTCATGTTCTCCTCAAGTCCGAGGAATCTGCACGGAGAAACAGTCCAAGCATGAGGATCTTACGGTTCAGCCAACAGCTATGCTTGCCTCTCAGAACTCTTCATCTCATAATGTTTCTAACTCAAATTCGTCCTTTTCTGGTGGCTTTCAAGGACGCGGAAGAGGTCGCAATTCAGGAAGAGGCAGATCCAATAATTTTTCACATCTTCCATCTTCTGGCTTCAGTCGTGGTCGTGGAGGATCTACTCCTGATGCTCGAGTTTCTTGCCAAATTTGTAATCGTCCTGGTCATCAGGCCCTTGACTGCTACTATCACTTCCAAGGACGACATCCTCCACCACAATTGA

Coding sequence (CDS)

ATGATGTCGATTTTGAAGGCTCACAAGATTTTTGGATTTCTCGATGGTTCGTCAGTCGCTCTGGCCGAATTTATCGAGGATAAACTTGCAAATGTCTCGTCTGTTGTACATGATGAGGATCTGATGATTTATGCTCTCAACGGCCTACCGGTTGATTACAACACTTTTCAAACATCAATGCGCACTCGTTCTGGTTCTGTGACTTTTGACGAACTTCATGTTCTCCTCAAGTCCGAGGAATCTGCACGGAGAAACAGTCCAAGCATGAGGATCTTACGGTTCAGCCAACAGCTATGCTTGCCTCTCAGAACTCTTCATCTCATAATGTTTCTAACTCAAATTCGTCCTTTTCTGGTGGCTTTCAAGGACGCGGAAGAGGTCGCAATTCAGGAAGAGGCAGATCCAATAATTTTTCACATCTTCCATCTTCTGGCTTCAGTCGTGGTCGTGGAGGATCTACTCCTGATGCTCGAGTTTCTTGCCAAATTTGTAATCGTCCTGGTCATCAGGCCCTTGACTGCTACTATCACTTCCAAGGACGACATCCTCCACCACAATTGA

Protein sequence

MMSILKAHKIFGFLDGSSVALAEFIEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESARRNSPSMRILRFSQQLCLPLRTLHLIMFLTQIRPFLVAFKDAEEVAIQEEADPIIFHIFHLLASVVVVEDLLLMLEFLAKFVIVLVIRPLTATITSKDDILHHN

Homology

[Close]

BLAST of Lag0030653 vs. NCBI nr
Match: KAG6588985.1 (Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-16
Identity = 47/58 (81.03%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 25  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA 83
           I+DKLANVS+VV+DEDL+IYALNGLP +YNTF+TSMRTRS  VTF+ELHVLLK+EESA
Sbjct: 151 IKDKLANVSTVVNDEDLLIYALNGLPTEYNTFRTSMRTRSTPVTFEELHVLLKAEESA 208

[Close]

BLAST of Lag0030653 vs. NCBI nr
Match: KAG7015254.1 (hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-16
Identity = 47/58 (81.03%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 25  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA 83
           I+DKLANVS+VV+DEDL+IYALNGLP +YNTF+TSMRTRS  VTF+ELHVLLK+EESA
Sbjct: 151 IKDKLANVSTVVNDEDLLIYALNGLPTEYNTFRTSMRTRSTPVTFEELHVLLKAEESA 208

[Close]

BLAST of Lag0030653 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-14
Identity = 43/58 (74.14%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 25  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA 83
           I+DKLANVS+ +++EDL+IYALNGLP +YNTF+TSMRTRS  VTF+ELHVLL++EESA
Sbjct: 165 IKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESA 222

[Close]

BLAST of Lag0030653 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-14
Identity = 43/58 (74.14%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 25  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA 83
           I+DKLANVS+ +++EDL+IYALNGLP +YNTF+TSMRTRS  VTF+ELHVLL++EESA
Sbjct: 165 IKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESA 222

[Close]

BLAST of Lag0030653 vs. NCBI nr
Match: KAA0049700.1 (T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-14
Identity = 43/58 (74.14%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 25  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA 83
           I+DKLANVS+ +++EDL+IYALNGLP +YNTF+TSMRTRS  VTF+ELHVLL++EESA
Sbjct: 165 IKDKLANVSTFINEEDLLIYALNGLPNEYNTFRTSMRTRSQPVTFEELHVLLRAEESA 222

The following BLAST results are available for this feature:

BLAST of Lag0030653 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588985.1	1.8e-16	81.03	Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyr...	[more]
KAG7015254.1	1.8e-16	81.03	hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_008448007.1	1.3e-14	74.14	PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]	[more]
XP_008448008.1	1.3e-14	74.14	PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]	[more]
KAA0049700.1	1.3e-14	74.14	T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0030653 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 26..85 e-value: 1.1E-6 score: 28.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0030653.1	Lag0030653.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding