Lag0030474 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0030474
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	V-type proton ATPase subunit G
Location	chr8: 47532056 .. 47532572 (-)
RNA-Seq Expression	Lag0030474
Synteny	Lag0030474

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCGTTTCGAGGACAAGGCAGCATTCATATGCTATTAACCGCGGAACAAGATGCACAGCAGGTCATATCCAGCGCTAGAAGCAGTAAACCATTTCTCCCTCCACTTTGATTTTAGGAAGATCAGAACGTATCTGTTTCTGTTCACAGCTCGTTTCCTTGATCACATAACATAAAATTGGTCTTTCCTCCGATCCAGTGAAGTTGGCGAGACTGAAACAAGCTAAAGAAGAATCTGAAAGGGAAGTGGCGATCTATCGCTCCCACTTGGAGGCTGAATATCAAAAGAAAGTTTCCAAGGTTATTAAATTGGATCACCAATGGCATTGACATTGAGAACATTTTTCATGTCATTTGTTTAATCTTTCTAATCACAGACGAGTTCTGAATCATATACCCAACGACTGGAGGAGGAAACCAAGATTAAGATCAACAACTTGAAAGAATCATCTACCAGGGTCTCAAAGGATGTAGTTGACATGCTTCTACAATATGTTGCGTCTGCGAGGACTTAG

mRNA sequence

ATGGATCCGTTTCGAGGACAAGGCAGCATTCATATGCTATTAACCGCGGAACAAGATGCACAGCAGGTCATATCCAGCGCTAGAAGCATGAAGTTGGCGAGACTGAAACAAGCTAAAGAAGAATCTGAAAGGGAAGTGGCGATCTATCGCTCCCACTTGGAGGCTGAATATCAAAAGAAAGTTTCCAAGACGAGTTCTGAATCATATACCCAACGACTGGAGGAGGAAACCAAGATTAAGATCAACAACTTGAAAGAATCATCTACCAGGGTCTCAAAGGATGTAGTTGACATGCTTCTACAATATGTTGCGTCTGCGAGGACTTAG

Coding sequence (CDS)

ATGGATCCGTTTCGAGGACAAGGCAGCATTCATATGCTATTAACCGCGGAACAAGATGCACAGCAGGTCATATCCAGCGCTAGAAGCATGAAGTTGGCGAGACTGAAACAAGCTAAAGAAGAATCTGAAAGGGAAGTGGCGATCTATCGCTCCCACTTGGAGGCTGAATATCAAAAGAAAGTTTCCAAGACGAGTTCTGAATCATATACCCAACGACTGGAGGAGGAAACCAAGATTAAGATCAACAACTTGAAAGAATCATCTACCAGGGTCTCAAAGGATGTAGTTGACATGCTTCTACAATATGTTGCGTCTGCGAGGACTTAG

Protein sequence

MDPFRGQGSIHMLLTAEQDAQQVISSARSMKLARLKQAKEESEREVAIYRSHLEAEYQKKVSKTSSESYTQRLEEETKIKINNLKESSTRVSKDVVDMLLQYVASART

Homology

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BLAST of Lag0030474 vs. NCBI nr
Match: XP_004143030.1 (V-type proton ATPase subunit G3 [Cucumis sativus] >KGN62432.1 hypothetical protein Csa_018762 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 5.7e-36
Identity = 87/108 (80.56%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MDPFRGQGSIHMLLTAEQDAQQVISSARSMKLARLKQAKEESEREVAIYRSHLEAEYQKK 60
           MDPFRGQG I MLLTAEQDAQQV+S+AR+MK+ARLKQAK+E+EREVA YR+HLEAEYQKK
Sbjct: 1   MDPFRGQGGIQMLLTAEQDAQQVVSTARNMKMARLKQAKDEAEREVAHYRAHLEAEYQKK 60

Query: 61  VSKTSSESYTQRLEEETKIKINNLKESSTRVSKDVVDMLLQYVASART 109
           VS++S+ SYTQRLEEET +KI+NLKESS RVSKDVV+MLLQYV S RT
Sbjct: 61  VSESSAGSYTQRLEEETNVKIDNLKESSARVSKDVVNMLLQYVTSPRT 108

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BLAST of Lag0030474 vs. NCBI nr
Match: XP_008444528.1 (PREDICTED: V-type proton ATPase subunit G3 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 9.8e-36
Identity = 86/108 (79.63%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MDPFRGQGSIHMLLTAEQDAQQVISSARSMKLARLKQAKEESEREVAIYRSHLEAEYQKK 60
           MDPFRGQG I MLLTAEQDAQQV+S+AR+MK+ARL+QAK+E+EREVA YR+HLEAEYQKK
Sbjct: 1   MDPFRGQGGIQMLLTAEQDAQQVVSTARNMKMARLRQAKDEAEREVAHYRAHLEAEYQKK 60

Query: 61  VSKTSSESYTQRLEEETKIKINNLKESSTRVSKDVVDMLLQYVASART 109
           VS++S+ SYTQRLEEET +KI NLKESS RVS+DVV+MLLQYV SART
Sbjct: 61  VSESSAGSYTQRLEEETNVKIENLKESSARVSRDVVNMLLQYVTSART 108

[Close]

BLAST of Lag0030474 vs. NCBI nr
Match: XP_038886540.1 (V-type proton ATPase subunit G3 [Benincasa hispida] >XP_038886541.1 V-type proton ATPase subunit G3 [Benincasa hispida])

HSP 1 Score: 159.8 bits (403), Expect = 1.3e-35
Identity = 88/108 (81.48%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MDPFRGQGSIHMLLTAEQDAQQVISSARSMKLARLKQAKEESEREVAIYRSHLEAEYQKK 60
           MDPFRGQG I MLLTAEQDAQQV+S AR+MK+ARLKQAKEE+EREVA YR+HLEAE+QKK
Sbjct: 1   MDPFRGQGGIQMLLTAEQDAQQVVSRARNMKMARLKQAKEEAEREVAQYRAHLEAEHQKK 60

Query: 61  VSKTSSESYTQRLEEETKIKINNLKESSTRVSKDVVDMLLQYVASART 109
           VS++SS S+ Q+LEEETK+KI NLKESS RVSKDVV+MLLQYVASART
Sbjct: 61  VSESSSGSHAQQLEEETKVKIENLKESSERVSKDVVNMLLQYVASART 108

[Close]

BLAST of Lag0030474 vs. NCBI nr
Match: KAA0060964.1 (V-type proton ATPase subunit G3 [Cucumis melo var. makuwa])

HSP 1 Score: 157.9 bits (398), Expect = 4.9e-35
Identity = 85/108 (78.70%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MDPFRGQGSIHMLLTAEQDAQQVISSARSMKLARLKQAKEESEREVAIYRSHLEAEYQKK 60
           MDPFRGQG I MLLTAEQDAQQV+S+AR+MK+ARL+QAK+E+EREV  YR+HLEAEYQKK
Sbjct: 1   MDPFRGQGGIQMLLTAEQDAQQVVSTARNMKMARLRQAKDEAEREVDHYRAHLEAEYQKK 60

Query: 61  VSKTSSESYTQRLEEETKIKINNLKESSTRVSKDVVDMLLQYVASART 109
           VS++S+ SYTQRLEEET +KI NLKESS RVS+DVV+MLLQYV SART
Sbjct: 61  VSESSAGSYTQRLEEETNVKIENLKESSARVSRDVVNMLLQYVTSART 108

[Close]

BLAST of Lag0030474 vs. NCBI nr
Match: XP_022132168.1 (V-type proton ATPase subunit G3 [Momordica charantia])

HSP 1 Score: 157.9 bits (398), Expect = 4.9e-35
Identity = 87/108 (80.56%), Postives = 99/108 (91.67%), Query Frame = 0


Query: 1   MDPFRGQGSIHMLLTAEQDAQQVISSARSMKLARLKQAKEESEREVAIYRSHLEAEYQKK 60
           MDPFRGQG I MLLTAEQDAQQVIS+AR+MK+ARLKQAK+E+EREVA YR+++EAEYQKK
Sbjct: 3   MDPFRGQGGIQMLLTAEQDAQQVISNARNMKMARLKQAKDEAEREVAQYRANMEAEYQKK 62

Query: 61  VSKTSSESYTQRLEEETKIKINNLKESSTRVSKDVVDMLLQYVASART 109
           V++T+S SY QRLEEET  KINNLKESS RVSKDVVDMLL+YVASA T
Sbjct: 63  VTETNSGSYAQRLEEETNAKINNLKESSDRVSKDVVDMLLRYVASATT 110

[Close]

BLAST of Lag0030474 vs. ExPASy Swiss-Prot
Match: Q9SZH0 (V-type proton ATPase subunit G3 OS=Arabidopsis thaliana OX=3702 GN=VHA-G3 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 6.2e-25
Identity = 61/105 (58.10%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 1   MDPFRGQGSIHMLLTAEQDAQQVISSARSMKLARLKQAKEESEREVAIYRSHLEAEYQKK 60
           MD  RGQG I MLLTAEQ+A +++S+AR+ KLAR+KQAK+E+E+E+  YRS LE EYQ +
Sbjct: 1   MDSLRGQGGIQMLLTAEQEAGRIVSAARTAKLARMKQAKDEAEKEMEEYRSRLEEEYQTQ 60

Query: 61  VSKTSSESYTQRLEEETKIKINNLKESSTRVSKDVVDMLLQYVAS 106
           VS T  E+  +RL++ET ++I NLKESS++VSKD+V ML++YV +
Sbjct: 61  VSGTDQEADAKRLDDETDVRITNLKESSSKVSKDIVKMLIKYVTT 105

[Close]

BLAST of Lag0030474 vs. ExPASy Swiss-Prot
Match: O82628 (V-type proton ATPase subunit G1 OS=Arabidopsis thaliana OX=3702 GN=VHA-G1 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.5e-20
Identity = 54/109 (49.54%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MDPFRGQGSIHMLLTAEQDAQQVISSARSMKLARLKQAKEESEREVAIYRSHLEAEYQKK 60
           M+  RGQGSI  LL AE +AQ ++++AR+ K+ARLKQAKEE+E+E+A Y++  E ++Q+K
Sbjct: 1   MESNRGQGSIQQLLAAEVEAQHIVNAARTAKMARLKQAKEEAEKEIAEYKAQTEQDFQRK 60

Query: 61  VSKTSSES--YTQRLEEETKIKINNLKESSTRVSKDVVDMLLQYVASAR 108
           + +TS +S    +RLE+ET  KI  LK  ++R+SKDVV+MLL++V + +
Sbjct: 61  LEETSGDSGANVKRLEQETDTKIEQLKNEASRISKDVVEMLLKHVTTVK 109

[Close]

BLAST of Lag0030474 vs. ExPASy Swiss-Prot
Match: O82702 (V-type proton ATPase subunit G 1 OS=Nicotiana tabacum OX=4097 GN=VATG1 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.6e-19
Identity = 53/104 (50.96%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 6   GQGSIHMLLTAEQDAQQVISSARSMKLARLKQAKEESEREVAIYRSHLEAEYQKKVSKTS 65
           GQ  I +LL AEQ+AQ ++++AR+ K ARLKQAKEE+E+E+A +R+++EAE+Q+K+ +TS
Sbjct: 6   GQNGIQLLLAAEQEAQHIVNNARTAKQARLKQAKEEAEKEIAEFRAYMEAEFQRKLEQTS 65

Query: 66  SES--YTQRLEEETKIKINNLKESSTRVSKDVVDMLLQYVASAR 108
            +S    +RLE+ET  KI +LK  + RVS DVV MLL++V + +
Sbjct: 66  GDSGANVKRLEQETDAKIEHLKTEAERVSPDVVQMLLRHVTTVK 109

[Close]

BLAST of Lag0030474 vs. ExPASy Swiss-Prot
Match: Q9SP55 (V-type proton ATPase subunit G OS=Citrus limon OX=2708 GN=VATG PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-18
Identity = 50/105 (47.62%), Postives = 81/105 (77.14%), Query Frame = 0


Query: 5   RGQGSIHMLLTAEQDAQQVISSARSMKLARLKQAKEESEREVAIYRSHLEAEYQKKVSKT 64
           RGQG I  LL AEQ+AQ ++++AR+ K+ARLKQAKEE+ERE+A YR+ +E E+Q+K++++
Sbjct: 5   RGQGGIQQLLAAEQEAQHIVAAARNAKMARLKQAKEEAEREIAEYRAQVEREFQRKLAES 64

Query: 65  SSES--YTQRLEEETKIKINNLKESSTRVSKDVVDMLLQYVASAR 108
             +S    +RLE+ET++KI++LK  + ++  DVV M L++V + +
Sbjct: 65  VGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMFLKHVTTVK 109

[Close]

BLAST of Lag0030474 vs. ExPASy Swiss-Prot
Match: O82703 (V-type proton ATPase subunit G 2 OS=Nicotiana tabacum OX=4097 GN=VATG2 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.1e-16
Identity = 52/110 (47.27%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MDPFRG-QGSIHMLLTAEQDAQQVISSARSMKLARLKQAKEESEREVAIYRSHLEAEYQK 60
           M+  RG Q  I +LL AEQ+AQ ++++AR+ K AR+KQAKEE+E+E+A +R+++EAE+Q+
Sbjct: 1   MESNRGSQNGIQLLLGAEQEAQHIVNAARTGKQARMKQAKEEAEKEIAEFRAYMEAEFQR 60

Query: 61  KVSKTSSES--YTQRLEEETKIKINNLKESSTRVSKDVVDMLLQYVASAR 108
            V +TS +S    +RLE+ET  KI +LK  +  +S DVV MLL+ V + +
Sbjct: 61  NVEQTSGDSGANVKRLEQETFAKIQHLKTEAESISHDVVQMLLRQVTTVK 110

The following BLAST results are available for this feature:

BLAST of Lag0030474 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143030.1	5.7e-36	80.56	V-type proton ATPase subunit G3 [Cucumis sativus] >KGN62432.1 hypothetical prote...	[more]
XP_008444528.1	9.8e-36	79.63	PREDICTED: V-type proton ATPase subunit G3 [Cucumis melo]	[more]
XP_038886540.1	1.3e-35	81.48	V-type proton ATPase subunit G3 [Benincasa hispida] >XP_038886541.1 V-type proto...	[more]
KAA0060964.1	4.9e-35	78.70	V-type proton ATPase subunit G3 [Cucumis melo var. makuwa]	[more]
XP_022132168.1	4.9e-35	80.56	V-type proton ATPase subunit G3 [Momordica charantia]	[more]

BLAST of Lag0030474 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZH0	6.2e-25	58.10	V-type proton ATPase subunit G3 OS=Arabidopsis thaliana OX=3702 GN=VHA-G3 PE=3 S...	[more]
O82628	3.5e-20	49.54	V-type proton ATPase subunit G1 OS=Arabidopsis thaliana OX=3702 GN=VHA-G1 PE=1 S...	[more]
O82702	6.6e-19	50.96	V-type proton ATPase subunit G 1 OS=Nicotiana tabacum OX=4097 GN=VATG1 PE=3 SV=1	[more]
Q9SP55	1.5e-18	47.62	V-type proton ATPase subunit G OS=Citrus limon OX=2708 GN=VATG PE=3 SV=1	[more]
O82703	3.1e-16	47.27	V-type proton ATPase subunit G 2 OS=Nicotiana tabacum OX=4097 GN=VATG2 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 32..52
None	No IPR available	GENE3D	1.20.5.2950		coord: 3..108 e-value: 1.2E-23 score: 85.4
None	No IPR available	PANTHER	PTHR12713:SF27	V-TYPE PROTON ATPASE SUBUNIT G3	coord: 1..107
IPR005124	Vacuolar (H+)-ATPase G subunit	TIGRFAM	TIGR01147	TIGR01147	coord: 9..106 e-value: 3.7E-18 score: 64.1
IPR005124	Vacuolar (H+)-ATPase G subunit	PFAM	PF03179	V-ATPase_G	coord: 7..105 e-value: 8.8E-25 score: 87.3
IPR005124	Vacuolar (H+)-ATPase G subunit	PANTHER	PTHR12713	VACUOLAR ATP SYNTHASE SUBUNIT G	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0030474.1	Lag0030474.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0016471	vacuolar proton-transporting V-type ATPase complex
molecular_function	GO:0042626	ATPase-coupled transmembrane transporter activity