Lag0030399 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0030399
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr8: 46948829 .. 46950373 (+)
RNA-Seq ExpressionLag0030399
SyntenyLag0030399
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGATGGCGAAAGCGAGCGGAGAGATTCAGCAATCGCGTCAACTCCATCTCTACAACCTAATTTCAAACCTAAAGGTGTCACTAACGAGCAGTTCTCTAAATTTCAGGTACTCTTTTTCCTTGATTTTCTTCCGATTTTGGCTTCTTTGTTCTCTTCCTATTGAAATTACTTCTGAAGTTTCTGTTTTCTGCTTTCTAATATTTCTCTTTCGCTTTTTTGCTTCCGATGATATTCTGTGCAGCTAACATGTATATAATAGTTTTTCGACATAAGATCTTTCTCTTAAATTCAGCGAACAGTCCTCTATTTAGAAGTTTTTCTTGTTGCATTTGTAGGGCTAGAAAACATCTGTTCAAATAAAAAGTCGTAATTGTTCTGGAATAATCTCCTTAAACAACATTCATTTTCTATTTGGTCTTTTCTTCTTAGAAACTTACAAACCGTTGTTAGAATGCACGTTCTGATGTATTCTCTTCACCTCAACTCAAAGATGTGCTTTATGCAAAAGGGTTTGCGAGGACATTGCCTTCTTTTTTTTAATCCATTATTCTCGTAGTTGAATTATTTGGTGTATCCTTAGTGCTTCTAACCTTCTTTGGGTAGCTCTGTTCATAATTGAGCTTTTTCTTCCAAGTAGCTTTTGGCCCCAACTCTAAGGGAAAAGCTGAACTTCCAAGGCTGTTTTATATACGAAGGAAAAGAATAGAAAAATAAACTCTCAGGCATATGGGGTGGGAGTTAAGATCAATGTTTTTAACTGGCTTTTGCCAGTTGGGGGTGTTTTACTTCAATATTATGATAAAGCTTCTAATCAGATATCACTAGACGGGAGGAAATAAAGAAACTTCTTGGAAGTGAAATCATGAAAGGTATTTCTATATCATATGGTGGTTGGAGTCTTGGAGAAACAATTGTAAATATTAGAAGGCTAAATTATTAGTTGAATAGAAACGGTGGCTTTCACTTGATTGGAGTTCCAGAATAGAATTCAGTTGAAGTTTTCTCTGTCTATTTCGGGTATTGCCATGTAAAGAATGATATCGATTTCTTAGCACATTTCAGTGGCTGCTTTCTTTGGCTCCCAGCAGCTTATGCTTCGTCAAGTTTCTGATATAGTTAATGGTTTTCTTCATTGATATGTTCTTGCCCCTATATATACTTTCTCTCTTCATTATCATTATTTTTTATATTATCAATTTAATGACAGGAGCTCCATAGAAGGCGACTTCAGATAAAATCAAGGTCAAAGATACGAAAGAATACAAAAGGTTTTTCCAATCCTTATATTGTTGTGTAGTTTCTTGTTGAAAGCTTATGTTTTGATTTTGAATTCTTTGTTGGAAAAATAGATGCGCCCAGAAAATCTCAAACCAAACATCTGAATACCAGTGATGAAGTTAATGAAGCTGAACACTCGAGACTTTCCAATTCTGATGTTGATTTCGGCGAAAAGAGCTCCCGCGTTCAGCAAGACAAGAAAAAAACTGCGCTTCCATCCAAAAAGCTACACAAGTTACATTGGGGGTATGAGATAATATGA

mRNA sequence

ATGGCGGATGGCGAAAGCGAGCGGAGAGATTCAGCAATCGCGTCAACTCCATCTCTACAACCTAATTTCAAACCTAAAGGTGTCACTAACGAGCAGTTCTCTAAATTTCAGCACATTTCAGTGGCTGCTTTCTTTGGCTCCCAGCAGCTTATGCTTCGTCAAGTTTCTGATATAGTTAATGATGCGCCCAGAAAATCTCAAACCAAACATCTGAATACCAGTGATGAAGTTAATGAAGCTGAACACTCGAGACTTTCCAATTCTGATGTTGATTTCGGCGAAAAGAGCTCCCGCGTTCAGCAAGACAAGAAAAAAACTGCGCTTCCATCCAAAAAGCTACACAAGTTACATTGGGGGTATGAGATAATATGA

Coding sequence (CDS)

ATGGCGGATGGCGAAAGCGAGCGGAGAGATTCAGCAATCGCGTCAACTCCATCTCTACAACCTAATTTCAAACCTAAAGGTGTCACTAACGAGCAGTTCTCTAAATTTCAGCACATTTCAGTGGCTGCTTTCTTTGGCTCCCAGCAGCTTATGCTTCGTCAAGTTTCTGATATAGTTAATGATGCGCCCAGAAAATCTCAAACCAAACATCTGAATACCAGTGATGAAGTTAATGAAGCTGAACACTCGAGACTTTCCAATTCTGATGTTGATTTCGGCGAAAAGAGCTCCCGCGTTCAGCAAGACAAGAAAAAAACTGCGCTTCCATCCAAAAAGCTACACAAGTTACATTGGGGGTATGAGATAATATGA

Protein sequence

MADGESERRDSAIASTPSLQPNFKPKGVTNEQFSKFQHISVAAFFGSQQLMLRQVSDIVNDAPRKSQTKHLNTSDEVNEAEHSRLSNSDVDFGEKSSRVQQDKKKTALPSKKLHKLHWGYEII
Homology
BLAST of Lag0030399 vs. NCBI nr
Match: XP_038884370.1 (uncharacterized protein LOC120075231 isoform X1 [Benincasa hispida])

HSP 1 Score: 142.1 bits (357), Expect = 3.1e-30
Identity = 80/124 (64.52%), Postives = 90/124 (72.58%), Query Frame = 0

Query: 1   MADG-ESERRDSAIASTPSLQPNFKPKGVTNEQFSKFQHISVAAFFGSQQLMLRQVSDIV 60
           M DG E E R  A AS PSLQPNFKPK VTNEQ SKFQ +         +   R+ + + 
Sbjct: 1   MEDGEEDELRGLASASAPSLQPNFKPKRVTNEQLSKFQELQRRRLQIKSRSKKRKNTKV- 60

Query: 61  NDAPRKSQTKHLNTSDEVNEAEHSRLSNSDVDFGEKSSRVQQDKKKTALPSKKLHKLHWG 120
            DA  KSQ KHLNT+DEVNEA++SRLSNS+VDFGEKSS VQQDK KT  PSKKLHKLHWG
Sbjct: 61  -DATGKSQIKHLNTNDEVNEADYSRLSNSEVDFGEKSSHVQQDKTKTTFPSKKLHKLHWG 120

Query: 121 YEII 124
           YEI+
Sbjct: 121 YEIL 122

BLAST of Lag0030399 vs. NCBI nr
Match: XP_038884371.1 (uncharacterized protein LOC120075231 isoform X2 [Benincasa hispida])

HSP 1 Score: 135.2 bits (339), Expect = 3.8e-28
Identity = 77/122 (63.11%), Postives = 87/122 (71.31%), Query Frame = 0

Query: 1   MADG-ESERRDSAIASTPSLQPNFKPKGVTNEQFSKFQHISVAAFFGSQQLMLRQVSDIV 60
           M DG E E R  A AS PSLQPNFKPK VTNEQ SKFQ +         +   R+ + + 
Sbjct: 1   MEDGEEDELRGLASASAPSLQPNFKPKRVTNEQLSKFQELQRRRLQIKSRSKKRKNTKV- 60

Query: 61  NDAPRKSQTKHLNTSDEVNEAEHSRLSNSDVDFGEKSSRVQQDKKKTALPSKKLHKLHWG 120
            DA  KSQ KHLNT+DEVNEA++SRLSNS+VDFGEKSS VQQDK KT  PSKKLHKLHWG
Sbjct: 61  -DATGKSQIKHLNTNDEVNEADYSRLSNSEVDFGEKSSHVQQDKTKTTFPSKKLHKLHWG 120

Query: 121 YE 122
            +
Sbjct: 121 LD 120

BLAST of Lag0030399 vs. NCBI nr
Match: XP_022133579.1 (uncharacterized protein LOC111006121 isoform X1 [Momordica charantia] >XP_022133580.1 uncharacterized protein LOC111006121 isoform X1 [Momordica charantia])

HSP 1 Score: 134.8 bits (338), Expect = 5.0e-28
Identity = 76/124 (61.29%), Postives = 86/124 (69.35%), Query Frame = 0

Query: 1   MADGESERRDSAIASTPSLQPNFKPKGVTNEQFSKFQHISVAAFFGSQQLMLRQVSDI-- 60
           M DGE E RD  IASTPSLQPNFKPKGVT+EQ SKFQ +        ++L ++  S I  
Sbjct: 3   MVDGEGEWRDEPIASTPSLQPNFKPKGVTHEQLSKFQELH------RRRLQIKSRSKIRK 62

Query: 61  -VNDAPRKSQTKHLNTSDEVNEAEHSRLSNSDVDFGEKSSRVQQDKKKTALPSKKLHKLH 120
              D   KSQ +HLN SD  NEAE S+ SNSDVD GEKS+ VQQDK KT LPSKKLHKLH
Sbjct: 63  NTKDTRGKSQIRHLNISDRGNEAEQSKHSNSDVDLGEKSTHVQQDKTKTMLPSKKLHKLH 120

Query: 121 WGYE 122
           WG +
Sbjct: 123 WGLD 120

BLAST of Lag0030399 vs. NCBI nr
Match: TYK06677.1 (uncharacterized protein E5676_scaffold453G001700 [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-27
Identity = 80/126 (63.49%), Postives = 88/126 (69.84%), Query Frame = 0

Query: 1   MADGES-ERRDSAIASTPSLQPNFKPKGVTNEQFSKFQHISVAAFFGSQQLMLRQVSDI- 60
           M DGE  E R  A AS+ SLQPNFKPK VT EQ SKFQ +        ++L ++  S I 
Sbjct: 1   MEDGEEYESRGLANASSSSLQPNFKPKRVTKEQLSKFQELQ------RRRLQIKSRSKIR 60

Query: 61  --VNDAPRKSQTKHLNTSDEVNEAEHSRLSNSDVDFGEKSSRVQQDKKKTALPSKKLHKL 120
               DA  KSQ KHLNTS+EVNEAEHSRLSNSDVDFGEKSS VQ DK KT L SKKLHKL
Sbjct: 61  KNTKDATGKSQIKHLNTSNEVNEAEHSRLSNSDVDFGEKSSLVQDDKTKTTLSSKKLHKL 120

Query: 121 HWGYEI 123
           HWG E+
Sbjct: 121 HWGPEL 120

BLAST of Lag0030399 vs. NCBI nr
Match: XP_008441256.1 (PREDICTED: uncharacterized protein LOC103485441 [Cucumis melo] >XP_008441257.1 PREDICTED: uncharacterized protein LOC103485441 [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 4.3e-27
Identity = 79/125 (63.20%), Postives = 87/125 (69.60%), Query Frame = 0

Query: 1   MADGES-ERRDSAIASTPSLQPNFKPKGVTNEQFSKFQHISVAAFFGSQQLMLRQVSDI- 60
           M DGE  E R  A AS+ SLQPNFKPK VT EQ SKFQ +        ++L ++  S I 
Sbjct: 1   MEDGEEYESRGLANASSSSLQPNFKPKRVTKEQLSKFQELQ------RRRLQIKSRSKIR 60

Query: 61  --VNDAPRKSQTKHLNTSDEVNEAEHSRLSNSDVDFGEKSSRVQQDKKKTALPSKKLHKL 120
               DA  KSQ KHLNTS+EVNEAEHSRLSNSDVDFGEKSS VQ DK KT L SKKLHKL
Sbjct: 61  KNTKDATGKSQIKHLNTSNEVNEAEHSRLSNSDVDFGEKSSLVQDDKTKTTLSSKKLHKL 119

Query: 121 HWGYE 122
           HWG +
Sbjct: 121 HWGLD 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038884370.13.1e-3064.52uncharacterized protein LOC120075231 isoform X1 [Benincasa hispida][more]
XP_038884371.13.8e-2863.11uncharacterized protein LOC120075231 isoform X2 [Benincasa hispida][more]
XP_022133579.15.0e-2861.29uncharacterized protein LOC111006121 isoform X1 [Momordica charantia] >XP_022133... [more]
TYK06677.11.9e-2763.49uncharacterized protein E5676_scaffold453G001700 [Cucumis melo var. makuwa][more]
XP_008441256.14.3e-2763.20PREDICTED: uncharacterized protein LOC103485441 [Cucumis melo] >XP_008441257.1 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..27

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0030399.1Lag0030399.1mRNA