Lag0030333 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0030333
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Calpain-type cysteine protease DEK1
Location	chr8: 46430490 .. 46433711 (+)
RNA-Seq Expression	Lag0030333
Synteny	Lag0030333

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGGAAGACCTTGACCATATTTTGTGGATATGCGATTTTCCTGCGGCTGTTTGGGACGAGTTCTTTGGTCCTTTCGGCTTGCAATTTGCTAGACAGAGGTCTTAGAGAGATGATCAAGAAGTTCCTTCCCCATCCTCCTTTTCGGGATCAGGGAAAGTTCTCATGGCAAGCTGGGATTTGTGCAATTATATGGGAGCTTTGGGGGGAGAGAAACAAATGGGACTTTTAGAGGGTTGGAGAGGAATACAGTTGACGTTTGGTCCCTTGTTGAATATAATGTTTCTCTTTGGACGTCTGTGACGTGTTTATTTTGTAATTATTCCATAGGTCTCATCCTTTTGGATTGGAGGCCCTTCGTCTAAGGAGGCCTCCCTCCTGTTTTTTGTGGGCTGGTTTTTTGGTTTGCCCTTTATTCTTTCATTTTTTCTCAATGAAGCTTGGTTTTTTATAAAAATGTCCTCTCGAGTGGATGACTTGGTTGAACGTCATCTAATCTAACCATGAAATCCAACTTCTTTCATGAAATCCAACTTCTTTGGTTATTAAACCCCTCATATAATACAAGTAAAACACGTTGTGGTTCTCCTAAATTTGTTAAAAACTCTCCTTTATGTGGAGTGAGTATAAATAATTAATATGCCTGAATAGAATATTGTGACTAATTATATATGTACGTGTGGGTGTATATATATGTGTTTTTAACTTTATGGAGTGGGATTCGAACCACTTCTTGATCATTAGCACCGAACTATGCTCTTGTTGGCATACATGTATTTGTTATAGGAAAAAAGAACGGTCATAAGTACAGATAGATCTTGCAACAAAAGGAAAAATTGGATAAATTTATCTTACAAACAGAGATGTGAACAAGTTGATTTAGCTTGATCTTTGGCATAAATTATTAAAGTCAACTTTAAGAGGAAAAAGAGAGAGAGAGGGAGATAGGGTAAAAAAGTGGGGGTGAAAAATGATGCATTTAAAAGAGGAATAGATTTGTGAATGTATAATTTCTACCATGAGTGAGGAAGGAAGGCCAAAATCTTTTCTTGAATGATTAGACTTTGCCAAATAAGCAATCCAAAGCGCGTGCCAAACACCACAAAAAGACCATTTCAGCCCTCATTTTTCCTCCCTAAGCTTTGGGGATTATTTTCATTAACAACTAAATTCTTCAAATATAATTTTGAAAATATTGTTATTTTTCTAAGAAATAACAAAAGTATGGTACATTCAATTCATAATTCGTATAACTAATTCGATGCACACGACAAGAGATATTAAGATAAATAGTACATACTAATCTTGATTTACACTTAATTGTGACTTTTTTTTTTTTTTTGAAACTTCACCTAATTGTGACTAAATAGAGTGTATAGACTACAATTAATCGTGTGCCACATTATTATTAAATTAACCAATTTTCTTTAGTACAAAATTAACTTAGTTAACTATATGAAATTAATGAACACAAAATTGAAAGCTTAGTGAATCTATTAAAAACTCTTTAAAATGAAATAGCTAAATAAGGACAACTCAAGACATATCAATTTATTGCCATGAGCATAACTTAGCGGTATTTGACATGTATCCTCGACTAAGTGATTAGAGTTTCGAATCTATCCACCCAAATTATCTTGATGTACTAAAAAAAAAAGAAACAACATATCAGTTTATTTTTTAAATACAAACATCAAATAAACAATCCTTAAAAATCATATATATATATATACTTTTAATTCATTTCAAAATAATTACTTTTTTTTTTTTTTGAGAGCCTAATTTTTCTTTAAAATAATAAATGCTGTGTATTTCGCATCCGCTGTCCCTTTTTCCCTCTACGAAATTATTTTGACGAATAGAGATAATAATCAAATATAGAGGGAAGCCATTATCTGCCAATATCTCATTCTCGACAGAGGAATTCTTCAAAGTTTAAACCAATGAAATACTACTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAATCCCAATGAAATAAATAAATTTAAAAGGAATGTTTTTTAGTGAAAAAAAAAGGTAAAAAAAAGTAGAGAAAAAAAAAAAAGAAATGTTTTTTTGAGGTTGAAATTCCAAAGATAGTCGGAAGGGAAAGTAAGGAAGAAAATGGAAAAGGGTATTATCAAAAAACTGTTCTTTTGCTAAACAAAGCATTCGAACAACGATCAGAACAGCAGCTATGGATTGCTGTTCTCTAACCTAACCTTTTTGCTACTCACTGGGTTTCAATCTCCTTCTCTTCCCTTCTTCTTTATCCCTCTCTTTTTCCATCTCTCTCTCTCTATTTCTTCGTCTCTTTGTTTATTTCTTGTAATAACCAGCGCGCCTGCTCTTTCTTTCACAGCCTAAATCCACATCCATGTCTTCTATAAACATGTAATTCCAATTCCTGGGTTCCCTTTAATTTTACTTCCTCACATGTAACTTCTCCAGCTTCCCACTTTTCCCCCTCTTCTCACACGATTTCTCCCTGTTTTGATTCCGAATCTAATTTGAATGTGGCTCAGTTTTCTCATCCCCTTGCTTTTTGGGAATTTTGCAGGCTGCTTTTGCTGGAGATTGCTGAGGGTCAATAGATCATGCCCAGATCTTGTTCTATCTTGATCCACTTGCTTATCTGGTCGACCTTAATCAAGTGAAGGGGAATAGAGGCGGAGGAGAGACACGGATAGAGCCAGGTGATTATCCACTGCCCTTCTCTTGTTTATGTGGTTGGAGATGGAAGTCAATGTTTCTGGAGTTTGGTTTTGTTGATTCTGCTTTAAATGATATTGGTTTTTTCTTTTAATTTGATTTTCCTCTGCATCTGGCCATCTGGGGTTGTTAGTATAACCCCAGAGGAGAAAACCTGTTGTCGTCTTCTTGGTGGAAGAGTAGGCATTTTTTTTTTTTTTTTTTGTTTCCTTGAAGTCAATGACAATTAGGAAACGAAAATTTGAAGGTTCTATAATTGAAGTGCTAAATGGATTTAGTTTCTCAATTAGGAGGTTTCCCCAATTTGATTGCACCATTTCCTGAAAGGCTAAACGCCACTGGTATTGTTATTGGAACGATGTTGAATCTCTTGCTTATTATTCTCTTCCTCTATTTTTAAGATGGAATTTGGCTGACTACATTTGGGAATCTCTTGTTTTGTTGTAGGGGGTTCATTGTTCCATGTAAAAGAAGCTGTATTTGCTTTAAAGCAGCTAGAGAATTAG

mRNA sequence

ATGGCGGAGGAAGACCTTGACCATATTTTGTGGATATGCGATTTTCCTGCGGCTGTTTGGGACGAGTTCTTTGGTCCTTTCGGCTTGCAATTTGCTAGACAGAGGTCTCATCCTTTTGGATTGGAGGCCCTTCGTCTAAGGAGGCCTCCCTCCTGTTTTTTGTGGGCTGGTTTTTTGATCTTGTTCTATCTTGATCCACTTGCTTATCTGGTCGACCTTAATCAAGTGAAGGGGAATAGAGGCGGAGGAGAGACACGGATAGAGCCAGGGGGTTCATTGTTCCATGTAAAAGAAGCTGTATTTGCTTTAAAGCAGCTAGAGAATTAG

Coding sequence (CDS)

ATGGCGGAGGAAGACCTTGACCATATTTTGTGGATATGCGATTTTCCTGCGGCTGTTTGGGACGAGTTCTTTGGTCCTTTCGGCTTGCAATTTGCTAGACAGAGGTCTCATCCTTTTGGATTGGAGGCCCTTCGTCTAAGGAGGCCTCCCTCCTGTTTTTTGTGGGCTGGTTTTTTGATCTTGTTCTATCTTGATCCACTTGCTTATCTGGTCGACCTTAATCAAGTGAAGGGGAATAGAGGCGGAGGAGAGACACGGATAGAGCCAGGGGGTTCATTGTTCCATGTAAAAGAAGCTGTATTTGCTTTAAAGCAGCTAGAGAATTAG

Protein sequence

MAEEDLDHILWICDFPAAVWDEFFGPFGLQFARQRSHPFGLEALRLRRPPSCFLWAGFLILFYLDPLAYLVDLNQVKGNRGGGETRIEPGGSLFHVKEAVFALKQLEN

Homology

[Close]

BLAST of Lag0030333 vs. NCBI nr
Match: KAE8646555.1 (hypothetical protein Csa_004845, partial [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-09
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 60  ILFYLDPLAYLVDLNQVKGNRGGGETRIEPGGSLFHVKEAVFALKQ 106
           ILFYLDPLAYL+ LN+VK NRGGGE + E G SLFHVKEAV  LKQ
Sbjct: 16  ILFYLDPLAYLLHLNKVKENRGGGERQRERGCSLFHVKEAVSGLKQ 61

The following BLAST results are available for this feature:

BLAST of Lag0030333 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646555.1	4.6e-09	76.09	hypothetical protein Csa_004845, partial [Cucumis sativus]	[more]

BLAST of Lag0030333 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 96..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0030333.1	Lag0030333.1	mRNA