Lag0030290 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0030290
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDuplicated homeodomain-like superfamily protein
Locationchr8: 46181114 .. 46181491 (-)
RNA-Seq ExpressionLag0030290
SyntenyLag0030290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACATCGAATCGGTGTCCGGAGGAAGAGCAGAGGAGAGAGTGGACGTTTACTGAGAATGTAGCATTTGACACGGCTCTTAGAATGTACAATGAGAAAACTCCGGACCGATGGCACAAGGTGGTGGCTTGTGTTCCATGGAAGACTCTGAGGGATGTGATCGATCATTATGCCGAATTACATGGAGAGTTATATAACATTGAAGCCGGTACAGTTCCACTTGTAAATTATGAGGCTAACACCAATTCTGATCGGCCGACTTCCAAGAACCGGGAAACGCTTAAAGAAAAGGAAGAACTCAGGCGAGTTTCCTTCACTAAACTATATGGATCCGCCTTCAAAGTTGAAACAACAACTCCACGTTACGATATTTGA

mRNA sequence

ATGTCGACATCGAATCGGTGTCCGGAGGAAGAGCAGAGGAGAGAGTGGACGTTTACTGAGAATGTAGCATTTGACACGGCTCTTAGAATGTACAATGAGAAAACTCCGGACCGATGGCACAAGGTGGTGGCTTGTGTTCCATGGAAGACTCTGAGGGATGTGATCGATCATTATGCCGAATTACATGGAGAGTTATATAACATTGAAGCCGGTACAGTTCCACTTGTAAATTATGAGGCTAACACCAATTCTGATCGGCCGACTTCCAAGAACCGGGAAACGCTTAAAGAAAAGGAAGAACTCAGGCGAGTTTCCTTCACTAAACTATATGGATCCGCCTTCAAAGTTGAAACAACAACTCCACGTTACGATATTTGA

Coding sequence (CDS)

ATGTCGACATCGAATCGGTGTCCGGAGGAAGAGCAGAGGAGAGAGTGGACGTTTACTGAGAATGTAGCATTTGACACGGCTCTTAGAATGTACAATGAGAAAACTCCGGACCGATGGCACAAGGTGGTGGCTTGTGTTCCATGGAAGACTCTGAGGGATGTGATCGATCATTATGCCGAATTACATGGAGAGTTATATAACATTGAAGCCGGTACAGTTCCACTTGTAAATTATGAGGCTAACACCAATTCTGATCGGCCGACTTCCAAGAACCGGGAAACGCTTAAAGAAAAGGAAGAACTCAGGCGAGTTTCCTTCACTAAACTATATGGATCCGCCTTCAAAGTTGAAACAACAACTCCACGTTACGATATTTGA

Protein sequence

MSTSNRCPEEEQRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTVPLVNYEANTNSDRPTSKNRETLKEKEELRRVSFTKLYGSAFKVETTTPRYDI
Homology
BLAST of Lag0030290 vs. NCBI nr
Match: XP_031277790.1 (transcription factor DIVARICATA-like [Pistacia vera])

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-13
Identity = 41/84 (48.81%), Postives = 56/84 (66.67%), Query Frame = 0

Query: 1  MSTSNRCPEEEQRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAE 60
          +ST+N   E+ +  +WT  EN  F+ AL +Y++ TPDRWHKV A +P KT+ DVI  Y E
Sbjct: 14 LSTNNWVLEDSKTTKWTAQENKIFENALAIYDKDTPDRWHKVAAMIPGKTVVDVIKQYKE 73

Query: 61 LHGELYNIEAGTVPLVNYEANTNS 85
          L  ++ NIEAG +P+  Y  NTNS
Sbjct: 74 LEADVSNIEAGLIPIPGYN-NTNS 96

BLAST of Lag0030290 vs. NCBI nr
Match: KAB5540892.1 (hypothetical protein DKX38_013866 [Salix brachista])

HSP 1 Score: 84.3 bits (207), Expect = 7.9e-13
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 2  STSNRCPEEEQRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAEL 61
          S+SN  PEE +  +WT  EN AF+ AL +Y+++TPDRW+KV A +P KT+ DVI  Y EL
Sbjct: 15 SSSNWLPEESKNTKWTPAENKAFENALAIYDKETPDRWYKVAAMIPGKTIGDVIKQYKEL 74

Query: 62 HGELYNIEAGTVPLVNYEAN 82
            ++  IEAG +P+  Y ++
Sbjct: 75 ELDVSYIEAGLIPVPGYSSS 94

BLAST of Lag0030290 vs. NCBI nr
Match: KAG5238313.1 (syringolide-induced protein [Salix suchowensis])

HSP 1 Score: 84.3 bits (207), Expect = 7.9e-13
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 0

Query: 2  STSNRCPEEEQRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAEL 61
          S+SN  PEE +  +WT  EN AF+ AL +Y+++TPDRW+KV A +P KT+ DVI  Y EL
Sbjct: 15 SSSNWLPEESKNTKWTPAENKAFENALAIYDKETPDRWYKVAAMIPGKTIGDVIKQYKEL 74

Query: 62 HGELYNIEAGTVPLVNYEAN 82
            ++  IEAG +P+  Y ++
Sbjct: 75 ELDVSYIEAGLIPVPGYSSS 94

BLAST of Lag0030290 vs. NCBI nr
Match: KAB5520377.1 (hypothetical protein DKX38_024696 [Salix brachista])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 0

Query: 1  MSTSNRCPEEEQRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAE 60
          +S +N   EE +  +WT  EN AF+ AL +Y++ TPDRWHKV A +P KT+RDVI  Y E
Sbjct: 14 LSRANWLVEESKNTKWTPAENKAFENALAVYDDDTPDRWHKVAAIIPGKTVRDVIKQYKE 73

Query: 61 LHGELYNIEAGTVPLVNYEAN 82
          L  ++  IEAG +P+  Y  +
Sbjct: 74 LELDVSYIEAGLIPVPGYSTS 94

BLAST of Lag0030290 vs. NCBI nr
Match: XP_024190861.1 (transcription factor DIVARICATA [Rosa chinensis] >PRQ43006.1 putative transcription factor MYB/SANT family [Rosa chinensis])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 0

Query: 1  MSTSNRCPEEEQRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAE 60
          + TSN   +E +  EWT  EN  F+ AL +Y++ TPDRWHKV + +P KT+ DVI  Y E
Sbjct: 14 LQTSNWLFQESKGAEWTAEENKRFENALALYDKDTPDRWHKVASWIPGKTVGDVIKQYKE 73

Query: 61 LHGELYNIEAGTVPLVNYEANTN 84
          L  ++ +IEAG +P+  Y +N +
Sbjct: 74 LEEDVSDIEAGLIPIPGYSSNNS 96

BLAST of Lag0030290 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.1e-12
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 0

Query: 16 WTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTVPL 75
          WTF++N  F+ AL +Y++ TPDRWH V   V  KT+ +V  HY  L  +L NIE G VPL
Sbjct: 12 WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRVPL 71

Query: 76 VNYEANTNSDR 87
           NY+   ++ R
Sbjct: 72 PNYKTFESNSR 82

BLAST of Lag0030290 vs. ExPASy Swiss-Prot
Match: Q8S9H7 (Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-11
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 0

Query: 9  EEEQRREWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNI 68
          E      WT  EN AF+ AL +++E TP+RW +V   VP KT+ DV+  Y EL  ++ +I
Sbjct: 19 ESRSTTRWTAAENKAFENALAVFDENTPNRWERVAERVPGKTVGDVMRQYKELEDDVSSI 78

Query: 69 EAGTVPLVNYEANT 83
          EAG VP+  Y  ++
Sbjct: 79 EAGFVPVPGYSTSS 92

BLAST of Lag0030290 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.2e-09
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 0

Query: 16 WTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTVPL 75
          WT  EN  F+ AL  Y++ TPDRWH V   V  K+  +V  HY  L  ++ +IE+G  P 
Sbjct: 12 WTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIESGRYPH 71

Query: 76 VNYEANTNS 85
           NY +N N+
Sbjct: 72 PNYRSNGNN 80

BLAST of Lag0030290 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-08
Identity = 31/83 (37.35%), Postives = 43/83 (51.81%), Query Frame = 0

Query: 14 REWTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTV 73
          R W+  EN AF+ AL +Y++ TPDRW  V   V  +T  +V  HY  L  ++  IE+G V
Sbjct: 9  RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKV 68

Query: 74 PLVNYEANTNSDRPTSKNRETLK 97
          P  NY     + +   K    LK
Sbjct: 69 PFPNYRTTGGNMKTDEKRFRNLK 91

BLAST of Lag0030290 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-08
Identity = 32/88 (36.36%), Postives = 48/88 (54.55%), Query Frame = 0

Query: 16  WTFTENVAFDTALRMYNEKTPDRWHKVVACVPWKTLRDVIDHYAELHGELYNIEAGTVPL 75
           WT  +N AF+ AL +Y++ TPDRWH V   V  KT  +    Y  L  ++ +IE G VP 
Sbjct: 14  WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIENGHVPF 73

Query: 76  VNYEANTNSDRPTSKNRETLKEKEELRR 104
            +Y+  T      + NR  L+++E+  R
Sbjct: 74  PDYKTTTG-----NSNRGRLRDEEKRMR 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031277790.11.6e-1348.81transcription factor DIVARICATA-like [Pistacia vera][more]
KAB5540892.17.9e-1347.50hypothetical protein DKX38_013866 [Salix brachista][more]
KAG5238313.17.9e-1347.50syringolide-induced protein [Salix suchowensis][more]
KAB5520377.11.3e-1246.91hypothetical protein DKX38_024696 [Salix brachista][more]
XP_024190861.11.3e-1244.58transcription factor DIVARICATA [Rosa chinensis] >PRQ43006.1 putative transcript... [more]
Match NameE-valueIdentityDescription
Q1A1734.1e-1246.48Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1[more]
Q8S9H74.5e-1141.89Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 ... [more]
Q6NNN03.2e-0942.03Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1[more]
Q58FS31.6e-0837.35Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1[more]
Q9SIJ52.1e-0836.36Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 12..64
e-value: 1.3E-4
score: 31.4
NoneNo IPR availableGENE3D1.10.10.60coord: 8..75
e-value: 8.3E-16
score: 59.5
NoneNo IPR availablePANTHERPTHR44042:SF6DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEINcoord: 10..81
IPR043363Transcription factor DIVARICATA-likePANTHERPTHR44042DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 10..81
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0030290.1Lag0030290.1mRNA