Lag0030267 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0030267
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr8: 45940154 .. 45940771 (-)
RNA-Seq ExpressionLag0030267
SyntenyLag0030267
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTGTGGCAAGATGGTTGAGCTGTTTGACAGCCGTTCGAATCTAGTCTATGAGAAGATTATCAAGGGTCGAGGTCGAACCATTGCGTCGCTGATTGTATGTGTTCTGTCATTGATGTTCTACCTGGAAATTGAAAACAGTAACGCAGCCTCTCCAAATCGTGCAAAATATGTGCTCCTGCCGACTGTTAACTTTGCCGCACTTCACCTGTTTGGCTTTCTCATATTCCATCAACAACTATTATCCGCCATCTTTCAGCATTGGGGAGGTTTACTTTTTCCTTTGTTAGATATTTTCTTGACTATGGTAATTGCTTACGTTAACCATTATATAATGGTTACACCTCACCAATATATCAATTGGAGATTAGTTCTTTTTATGTTATCATATGCGACTTTCCATTTTCTCTTGGTGGTTAACGAGATTGGAGGGAAAGATTTTAGGCTAACAAGGGGTTGTCTCGGAGCTGCATTCATGCTTACCATGAAACAACAGAAAACAATAGGAGCCATAGTTTTCGTTGTAGCAGCAACATTATTTTACCTCCAAGAATGCCATATAGAAGGGCTCCACGAGAAAAGGCGACGCTCCCGAAACCGATGCAGCGGACTATGA

mRNA sequence

ATGAGTTGTGGCAAGATGGTTGAGCTGTTTGACAGCCGTTCGAATCTAGTCTATGAGAAGATTATCAAGGGTCGAGGTCGAACCATTGCGTCGCTGATTGTATGTGTTCTGTCATTGATGTTCTACCTGGAAATTGAAAACAGTAACGCAGCCTCTCCAAATCGTGCAAAATATGTGCTCCTGCCGACTGTTAACTTTGCCGCACTTCACCTGTTTGGCTTTCTCATATTCCATCAACAACTATTATCCGCCATCTTTCAGCATTGGGGAGGTTTACTTTTTCCTTTGTTAGATATTTTCTTGACTATGGTAATTGCTTACGTTAACCATTATATAATGGTTACACCTCACCAATATATCAATTGGAGATTAGTTCTTTTTATGTTATCATATGCGACTTTCCATTTTCTCTTGGTGGTTAACGAGATTGGAGGGAAAGATTTTAGGCTAACAAGGGGTTGTCTCGGAGCTGCATTCATGCTTACCATGAAACAACAGAAAACAATAGGAGCCATAGTTTTCGTTGTAGCAGCAACATTATTTTACCTCCAAGAATGCCATATAGAAGGGCTCCACGAGAAAAGGCGACGCTCCCGAAACCGATGCAGCGGACTATGA

Coding sequence (CDS)

ATGAGTTGTGGCAAGATGGTTGAGCTGTTTGACAGCCGTTCGAATCTAGTCTATGAGAAGATTATCAAGGGTCGAGGTCGAACCATTGCGTCGCTGATTGTATGTGTTCTGTCATTGATGTTCTACCTGGAAATTGAAAACAGTAACGCAGCCTCTCCAAATCGTGCAAAATATGTGCTCCTGCCGACTGTTAACTTTGCCGCACTTCACCTGTTTGGCTTTCTCATATTCCATCAACAACTATTATCCGCCATCTTTCAGCATTGGGGAGGTTTACTTTTTCCTTTGTTAGATATTTTCTTGACTATGGTAATTGCTTACGTTAACCATTATATAATGGTTACACCTCACCAATATATCAATTGGAGATTAGTTCTTTTTATGTTATCATATGCGACTTTCCATTTTCTCTTGGTGGTTAACGAGATTGGAGGGAAAGATTTTAGGCTAACAAGGGGTTGTCTCGGAGCTGCATTCATGCTTACCATGAAACAACAGAAAACAATAGGAGCCATAGTTTTCGTTGTAGCAGCAACATTATTTTACCTCCAAGAATGCCATATAGAAGGGCTCCACGAGAAAAGGCGACGCTCCCGAAACCGATGCAGCGGACTATGA

Protein sequence

MSCGKMVELFDSRSNLVYEKIIKGRGRTIASLIVCVLSLMFYLEIENSNAASPNRAKYVLLPTVNFAALHLFGFLIFHQQLLSAIFQHWGGLLFPLLDIFLTMVIAYVNHYIMVTPHQYINWRLVLFMLSYATFHFLLVVNEIGGKDFRLTRGCLGAAFMLTMKQQKTIGAIVFVVAATLFYLQECHIEGLHEKRRRSRNRCSGL
Homology
[Close]
BLAST of Lag0030267 vs. NCBI nr
Match: XP_022134095.1 (uncharacterized protein LOC111006450 [Momordica charantia])

HSP 1 Score: 179.9 bits (455), Expect = 2.3e-41
Identity = 102/192 (53.12%), Postives = 131/192 (68.23%), Query Frame = 0 

Query: 1   MSCGKMVELFDSRSNLVYEKIIKGRGRTIASLIVCVLSLMFYLEIENSNAASPNRAKYVL 60
           M  GK+VELF+    LVYEKIIKG+ RT+ SL VCV SL + LE E      PN   ++ 
Sbjct: 1   MKWGKIVELFEHMDTLVYEKIIKGQDRTLISLGVCVASLAYCLETE----IPPN---HIF 60

Query: 61  LPTVNFAALHLFGFLIFHQQLLSAIFQHWGGLLFPLLDIFLTMVIAYVNHYIMVTPHQYI 120
           L T+ FAALH+FG  IF QQ  S   Q+WG L+FPL+ +       YV +Y+M    ++ 
Sbjct: 61  LVTLGFAALHMFGIFIFTQQWFSNFLQNWGSLVFPLVGVLKAFGNGYVMYYVM-AHKEHA 120

Query: 121 NWRLVLFMLSYATFHFLLVVNEIGGKDFRLTRGCLGAAFMLTM--KQQKTIG-AIVFVVA 180
           NWRL++F+LSYATFHFLL++NEIGG+DF +TRG L AAF L M  +QQKT G AIV VV+
Sbjct: 121 NWRLLVFVLSYATFHFLLMINEIGGRDFGVTRGFLAAAFTLAMFIQQQKTFGVAIVLVVS 180

Query: 181 ATLFYLQECHIE 190
            TL + +ECHI+
Sbjct: 181 TTLVFFKECHIQ 184

[Close]
BLAST of Lag0030267 vs. ExPASy TrEMBL
Match: A0A6J1BX40 (uncharacterized protein LOC111006450 OS=Momordica charantia OX=3673 GN=LOC111006450 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 102/192 (53.12%), Postives = 131/192 (68.23%), Query Frame = 0 

Query: 1   MSCGKMVELFDSRSNLVYEKIIKGRGRTIASLIVCVLSLMFYLEIENSNAASPNRAKYVL 60
           M  GK+VELF+    LVYEKIIKG+ RT+ SL VCV SL + LE E      PN   ++ 
Sbjct: 1   MKWGKIVELFEHMDTLVYEKIIKGQDRTLISLGVCVASLAYCLETE----IPPN---HIF 60

Query: 61  LPTVNFAALHLFGFLIFHQQLLSAIFQHWGGLLFPLLDIFLTMVIAYVNHYIMVTPHQYI 120
           L T+ FAALH+FG  IF QQ  S   Q+WG L+FPL+ +       YV +Y+M    ++ 
Sbjct: 61  LVTLGFAALHMFGIFIFTQQWFSNFLQNWGSLVFPLVGVLKAFGNGYVMYYVM-AHKEHA 120

Query: 121 NWRLVLFMLSYATFHFLLVVNEIGGKDFRLTRGCLGAAFMLTM--KQQKTIG-AIVFVVA 180
           NWRL++F+LSYATFHFLL++NEIGG+DF +TRG L AAF L M  +QQKT G AIV VV+
Sbjct: 121 NWRLLVFVLSYATFHFLLMINEIGGRDFGVTRGFLAAAFTLAMFIQQQKTFGVAIVLVVS 180

Query: 181 ATLFYLQECHIE 190
            TL + +ECHI+
Sbjct: 181 TTLVFFKECHIQ 184

The following BLAST results are available for this feature:
BLAST of Lag0030267 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022134095.12.3e-4153.13uncharacterized protein LOC111006450 [Momordica charantia][more]
BLAST of Lag0030267 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0030267 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BX401.1e-4153.13uncharacterized protein LOC111006450 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
BLAST of Lag0030267 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0030267.1Lag0030267.1mRNA