Lag0030180 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0030180
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	stress-induced protein KIN2-like
Location	chr8: 45161605 .. 45162162 (-)
RNA-Seq Expression	Lag0030180
Synteny	Lag0030180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAACTCTCAGAAGATGAGCTATCACGCTGGAGAAGCCAAGGGCCAAGCTCAAGCTTCTCATTTGTTACCTTTGTTTTTATTAGAAAAAAAGTTTTCTAATACTATCATTGATGTAGTTGATTACAAATGACAGGTACAAGTCTATCATCCATTGCCTTTGGTTTTATTAGGAAAAAAAGTTTTTTGATATTATCGACAATGTAGTTTATTACATGTGATGATAGTACAACAATATACAGTTTTTTTTAATATATTCCACGGTAAACTTGTTATCATCTAGTGAGTTCACGTCGTAATTTCTTTTTTAATTATTGGTGATATGACAAAAAATATAATCAGTAATCAACATTGGAAAATGCTCCATATTTGTTTCGTGTTTTAGGACTAAAGGTTGATTAGTAATTTTCATTTTCAGGAAAAGGTTAGCAATATGATGGATAAGACAGGCGATGTAGTCCAATCAGCCAAAGAGTCAATTCAAGAGGCTGGACAACAAGTGAAGGCTAAGGCACAAGGAACTGTTGATGCTGTCAAAGATGCAGTTAACAAATGA

mRNA sequence

ATGGACAACTCTCAGAAGATGAGCTATCACGCTGGAGAAGCCAAGGGCCAAGCTCAAGCTTCTCATTTGTTACCTTTGTTGATTAGTAATTTTCATTTTCAGGAAAAGGTTAGCAATATGATGGATAAGACAGGCGATGTAGTCCAATCAGCCAAAGAGTCAATTCAAGAGGCTGGACAACAAGTGAAGGCTAAGGCACAAGGAACTGTTGATGCTGTCAAAGATGCAGTTAACAAATGA

Coding sequence (CDS)

ATGGACAACTCTCAGAAGATGAGCTATCACGCTGGAGAAGCCAAGGGCCAAGCTCAAGCTTCTCATTTGTTACCTTTGTTGATTAGTAATTTTCATTTTCAGGAAAAGGTTAGCAATATGATGGATAAGACAGGCGATGTAGTCCAATCAGCCAAAGAGTCAATTCAAGAGGCTGGACAACAAGTGAAGGCTAAGGCACAAGGAACTGTTGATGCTGTCAAAGATGCAGTTAACAAATGA

Protein sequence

MDNSQKMSYHAGEAKGQAQASHLLPLLISNFHFQEKVSNMMDKTGDVVQSAKESIQEAGQQVKAKAQGTVDAVKDAVNK

Homology

[Close]

BLAST of Lag0030180 vs. NCBI nr
Match: XP_038891080.1 (late embryogenesis abundant protein 2-like [Benincasa hispida])

HSP 1 Score: 99.0 bits (245), Expect = 2.0e-17
Identity = 56/79 (70.89%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 1  MDNSQKMSYHAGEAKGQAQASHLLPLLISNFHFQEKVSNMMDKTGDVVQSAKESIQEAGQ 60
          MDNSQKMSYHAGEAKGQ                QEKVSNMMDK  D  QSAKESIQEAGQ
Sbjct: 1  MDNSQKMSYHAGEAKGQT---------------QEKVSNMMDKASDAAQSAKESIQEAGQ 60

Query: 61 QVKAKAQGTVDAVKDAVNK 80
          QVKAKAQG  DAVKDA+NK
Sbjct: 61 QVKAKAQGATDAVKDAINK 64

[Close]

BLAST of Lag0030180 vs. NCBI nr
Match: XP_038891124.1 (late embryogenesis abundant protein 7-like [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 7.5e-17
Identity = 53/79 (67.09%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 1  MDNSQKMSYHAGEAKGQAQASHLLPLLISNFHFQEKVSNMMDKTGDVVQSAKESIQEAGQ 60
          MDNSQKMSYHAGEAKGQA               QEK+SNMMDK GD  QSAKES+QE GQ
Sbjct: 1  MDNSQKMSYHAGEAKGQA---------------QEKLSNMMDKAGDAAQSAKESVQEVGQ 60

Query: 61 QVKAKAQGTVDAVKDAVNK 80
          Q+KAK QG  DAVKDA+NK
Sbjct: 61 QMKAKVQGAADAVKDAINK 64

[Close]

BLAST of Lag0030180 vs. NCBI nr
Match: XP_038891139.1 (stress-induced protein KIN2-like [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 7.5e-17
Identity = 54/79 (68.35%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 1  MDNSQKMSYHAGEAKGQAQASHLLPLLISNFHFQEKVSNMMDKTGDVVQSAKESIQEAGQ 60
          MDNSQKMSYHAGEAKGQA               QEKVS+MMDK  DV QSAKE++QEAGQ
Sbjct: 1  MDNSQKMSYHAGEAKGQA---------------QEKVSSMMDKASDVAQSAKETVQEAGQ 60

Query: 61 QVKAKAQGTVDAVKDAVNK 80
          QVKAK QG  DAVKDA+NK
Sbjct: 61 QVKAKVQGATDAVKDAINK 64

[Close]

BLAST of Lag0030180 vs. NCBI nr
Match: XP_038891163.1 (stress-induced protein KIN2-like [Benincasa hispida])

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16
Identity = 54/79 (68.35%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 1  MDNSQKMSYHAGEAKGQAQASHLLPLLISNFHFQEKVSNMMDKTGDVVQSAKESIQEAGQ 60
          MDNSQKMSYHAGEAKGQA               QEKVSNMMDK  D  QS KES+QEAGQ
Sbjct: 1  MDNSQKMSYHAGEAKGQA---------------QEKVSNMMDKANDAAQSTKESMQEAGQ 60

Query: 61 QVKAKAQGTVDAVKDAVNK 80
          Q+KAKAQG  +AVKDAVNK
Sbjct: 61 QIKAKAQGAAEAVKDAVNK 64

[Close]

BLAST of Lag0030180 vs. NCBI nr
Match: XP_038891063.1 (late embryogenesis abundant protein 2-like [Benincasa hispida])

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-15
Identity = 52/79 (65.82%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 1  MDNSQKMSYHAGEAKGQAQASHLLPLLISNFHFQEKVSNMMDKTGDVVQSAKESIQEAGQ 60
          MDNSQKM YHAGEAKGQ                QEKVSNMMDK  D  QSAKES+QEAGQ
Sbjct: 1  MDNSQKMKYHAGEAKGQT---------------QEKVSNMMDKAADAAQSAKESMQEAGQ 60

Query: 61 QVKAKAQGTVDAVKDAVNK 80
          QVKAK QG  D VKDA+NK
Sbjct: 61 QVKAKVQGAADVVKDAINK 64

The following BLAST results are available for this feature:

BLAST of Lag0030180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891080.1	2.0e-17	70.89	late embryogenesis abundant protein 2-like [Benincasa hispida]	[more]
XP_038891124.1	7.5e-17	67.09	late embryogenesis abundant protein 7-like [Benincasa hispida]	[more]
XP_038891139.1	7.5e-17	68.35	stress-induced protein KIN2-like [Benincasa hispida]	[more]
XP_038891163.1	1.3e-16	68.35	stress-induced protein KIN2-like [Benincasa hispida]	[more]
XP_038891063.1	1.1e-15	65.82	late embryogenesis abundant protein 2-like [Benincasa hispida]	[more]

BLAST of Lag0030180 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1430		coord: 32..79 e-value: 1.1E-5 score: 27.6
None	No IPR available	PANTHER	PTHR34191:SF23	STRESS-INDUCED PROTEIN KIN1-RELATED	coord: 1..77
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0030180.1	Lag0030180.1	mRNA