Lag0030153 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0030153
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionultraviolet-B receptor UVR8
Locationchr8: 44970693 .. 44971970 (-)
RNA-Seq ExpressionLag0030153
SyntenyLag0030153
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTTGAATTCAAACAGGTGAAATTATCAAGTGCAAATGATTTTGGTCAACTGGGCGATGGAACTGAGGAAAAGAGCAAAGAACCAAAGAAAGTGAAGCAATTGCAAGCTAAGTTTGTGAAATCTGTTTCCTGTGGAGCACATTGTACTGCTGCTATTACAGAACCTCGTGAGAATGATGGCTCCATTTCAACTAGTTGACTCTGGATTTGGGGACAAAATCAGGCTTTAATTTATTTGTTTTAAATGTTGATATTCTTTTATAAACTTCTCTGCATTTTCAGCTACAACTCTCTTTTCACGGGATCCAATTTGCCTTGCTTATTTTGGTGAGCCTTCACACCAAAAACGGTATGTATCTAACGTTTAGTAGGTGAATATCACACATCTATCTTGTATATATTTAAAATTTTTAAAATGTTATTAATTTATCAGTACTTTTTCACTTTTTCTTCTCTCTTTTATTTTATTGTACCAATACTGAGCCTAGTTAATGTATTTAATCAGTCCTCTCATTTATTCTATTCCATTCTTGCATCTTCCTCTATGTGAGAGGCGAGTGAGGCATCCATCATTTTGACCACCCTTGGGAAGACTTTATCTTATTTGCTCAAAAAAAATTCACAGTATCCTCAGATCCTTGGCTTCAACTAATTCAATGTACTTGCTGTGTCGTTAATTTGTTTCTCTTCTCTATGTTGAAGCTCCTCTAGGATTCAACAGTATTGTGCGATAAAATAGAACTGTCTTTGGCTAATATAGAATTTAATGTTGAATTAACTTATGTTTTAACATGGTATAAAATTTTAGTGAAGTTGATTTCTACTCGTATACATGTGGTGATGCTACCGTATATTGGAAATCTATCCTACTAAGTACTAACTGAGTTGGAAGTTGGAGAGAACCTTGAGTTTTTATCTAGTTTCCTGCCACCTCAATAATAATACAATCCCTATTCTGGTTGACCAGGCTACAATGAGTATGGTCAGCTAGGCAGGGGTGTTACTTCCGAAGGTCTACAAGGAGTTCGCATTATAAGTGCTTATGCAAACTTCATTGATGAGGCCCCTGAGCTTGTAAAGATTACTAAAGTGTCATGTGGGGAGTACCATTCTGCAGCTATATCTGAAAACGGTGAGGTGTAAATGATCCAAAGGACTAAATAACTGGAAAAGAAGTTTTTATACTTAAGTTTGTGAACTGTGGTTATCCACAGATCACATAGATCTGAAGGTTTGCAACGGGGCTAGGAGTTTGAAAATTATACCAAGCTAA

mRNA sequence

ATGGCTCTTGAATTCAAACAGGTGAAATTATCAAGTGCAAATGATTTTGGTCAACTGGGCGATGGAACTGAGGAAAAGAGCAAAGAACCAAAGAAAGTGAAGCAATTGCAAGCTAAGTTTGTGAAATCTGTTTCCTGTGGAGCACATTGTACTGCTGCTATTACAGAACCTCCTACAACTCTCTTTTCACGGGATCCAATTTGCCTTGCTTATTTTGGCTACAATGAGTATGGTCAGCTAGGCAGGGGTGTTACTTCCGAAGGTCTACAAGGAGTTCGCATTATAAGTGCTTATGCAAACTTCATTGATGAGGCCCCTGAGCTTGTAAAGATTACTAAAGTGTCATGTGGGGAGTACCATTCTGCAGCTATATCTGAAAACGATCACATAGATCTGAAGGTTTGCAACGGGGCTAGGAGTTTGAAAATTATACCAAGCTAA

Coding sequence (CDS)

ATGGCTCTTGAATTCAAACAGGTGAAATTATCAAGTGCAAATGATTTTGGTCAACTGGGCGATGGAACTGAGGAAAAGAGCAAAGAACCAAAGAAAGTGAAGCAATTGCAAGCTAAGTTTGTGAAATCTGTTTCCTGTGGAGCACATTGTACTGCTGCTATTACAGAACCTCCTACAACTCTCTTTTCACGGGATCCAATTTGCCTTGCTTATTTTGGCTACAATGAGTATGGTCAGCTAGGCAGGGGTGTTACTTCCGAAGGTCTACAAGGAGTTCGCATTATAAGTGCTTATGCAAACTTCATTGATGAGGCCCCTGAGCTTGTAAAGATTACTAAAGTGTCATGTGGGGAGTACCATTCTGCAGCTATATCTGAAAACGATCACATAGATCTGAAGGTTTGCAACGGGGCTAGGAGTTTGAAAATTATACCAAGCTAA

Protein sequence

MALEFKQVKLSSANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEPPTTLFSRDPICLAYFGYNEYGQLGRGVTSEGLQGVRIISAYANFIDEAPELVKITKVSCGEYHSAAISENDHIDLKVCNGARSLKIIPS
Homology
BLAST of Lag0030153 vs. NCBI nr
Match: KAG6602541.1 (Ultraviolet-B receptor UVR8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174.5 bits (441), Expect = 6.8e-40
Identity = 97/162 (59.88%), Postives = 104/162 (64.20%), Query Frame = 0

Query: 13  ANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEP--------------- 72
           ANDFGQLGDGTEEKSKEPKKVKQLQ +FVKSVSCGAHCTAAI EP               
Sbjct: 173 ANDFGQLGDGTEEKSKEPKKVKQLQTEFVKSVSCGAHCTAAIAEPRENDGTISTSRLWIW 232

Query: 73  -----------------PTTLFSR------------DPICLAYFGYNEYGQLGRGVTSEG 131
                            P T+  +            D   +  +GYNEYGQLGRGVTSEG
Sbjct: 233 GQNQGSNLPRLFWGAFTPNTIIRQVSCGAVHVVALSDDGQMQAWGYNEYGQLGRGVTSEG 292

BLAST of Lag0030153 vs. NCBI nr
Match: KAG7033219.1 (RCC1 and BTB domain-containing protein 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.5 bits (441), Expect = 6.8e-40
Identity = 97/162 (59.88%), Postives = 104/162 (64.20%), Query Frame = 0

Query: 13  ANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEP--------------- 72
           ANDFGQLGDGTEEKSKEPKKVKQLQ +FVKSVSCGAHCTAAI EP               
Sbjct: 102 ANDFGQLGDGTEEKSKEPKKVKQLQTEFVKSVSCGAHCTAAIAEPRENDGTISTSRLWIW 161

Query: 73  -----------------PTTLFSR------------DPICLAYFGYNEYGQLGRGVTSEG 131
                            P T+  +            D   +  +GYNEYGQLGRGVTSEG
Sbjct: 162 GQNQGSNLPRLFWGAFTPNTIIRQVSCGAVHVVALSDDGQMQAWGYNEYGQLGRGVTSEG 221

BLAST of Lag0030153 vs. NCBI nr
Match: XP_023554245.1 (ultraviolet-B receptor UVR8 [Cucurbita pepo subsp. pepo] >XP_023554254.1 ultraviolet-B receptor UVR8 [Cucurbita pepo subsp. pepo] >XP_023554263.1 ultraviolet-B receptor UVR8 [Cucurbita pepo subsp. pepo] >XP_023554270.1 ultraviolet-B receptor UVR8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.5 bits (441), Expect = 6.8e-40
Identity = 97/162 (59.88%), Postives = 104/162 (64.20%), Query Frame = 0

Query: 13  ANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEP--------------- 72
           ANDFGQLGDGTEEKSKEPKKVKQLQ +FVKSVSCGAHCTAAI EP               
Sbjct: 86  ANDFGQLGDGTEEKSKEPKKVKQLQTEFVKSVSCGAHCTAAIAEPRENDGTISTSRLWIW 145

Query: 73  -----------------PTTLFSR------------DPICLAYFGYNEYGQLGRGVTSEG 131
                            P T+  +            D   +  +GYNEYGQLGRGVTSEG
Sbjct: 146 GQNQGSNLPRLFWGAFTPNTIIRQVSCGAVHVVALSDDGQMQAWGYNEYGQLGRGVTSEG 205

BLAST of Lag0030153 vs. NCBI nr
Match: XP_022954542.1 (ultraviolet-B receptor UVR8 [Cucurbita moschata])

HSP 1 Score: 174.5 bits (441), Expect = 6.8e-40
Identity = 97/162 (59.88%), Postives = 104/162 (64.20%), Query Frame = 0

Query: 13  ANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEP--------------- 72
           ANDFGQLGDGTEEKSKEPKKVKQLQ +FVKSVSCGAHCTAAI EP               
Sbjct: 86  ANDFGQLGDGTEEKSKEPKKVKQLQTEFVKSVSCGAHCTAAIAEPHENDGTISTSRLWIW 145

Query: 73  -----------------PTTLFSR------------DPICLAYFGYNEYGQLGRGVTSEG 131
                            P T+  +            D   +  +GYNEYGQLGRGVTSEG
Sbjct: 146 GQNQGSNLPRLFWGAFTPNTIIRQVSCGAVHVVALSDDGQMQAWGYNEYGQLGRGVTSEG 205

BLAST of Lag0030153 vs. NCBI nr
Match: XP_022990753.1 (ultraviolet-B receptor UVR8 [Cucurbita maxima])

HSP 1 Score: 174.1 bits (440), Expect = 8.9e-40
Identity = 97/162 (59.88%), Postives = 104/162 (64.20%), Query Frame = 0

Query: 13  ANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEP--------------- 72
           ANDFGQLGDGTEEKSKEPKKVKQLQ +FVKSVSCGAHCTAAI EP               
Sbjct: 86  ANDFGQLGDGTEEKSKEPKKVKQLQMEFVKSVSCGAHCTAAIAEPRVNDGTISTSRLWIW 145

Query: 73  -----------------PTTLFSR------------DPICLAYFGYNEYGQLGRGVTSEG 131
                            P T+  +            D   +  +GYNEYGQLGRGVTSEG
Sbjct: 146 GQNQGSNLPRLFWGAFTPNTIIRQVSCGAVHVVALSDDGQMQAWGYNEYGQLGRGVTSEG 205

BLAST of Lag0030153 vs. ExPASy Swiss-Prot
Match: Q15751 (Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens OX=9606 GN=HERC1 PE=1 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 6.7e-06
Identity = 34/111 (30.63%), Postives = 55/111 (49.55%), Query Frame = 0

Query: 15   DFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEPPTTLFSRDPICLAYFGY 74
            D+G+LG G  ++ + P++++ LQ + V  +SCG   +A +T             L  FG 
Sbjct: 4110 DYGKLGHGNSDRQRRPRQIEALQGEEVVQMSCGFKHSAVVTSDGK---------LFTFGN 4169

Query: 75   NEYGQLGRGVTSEGLQGVRIISAYANFIDEAPELVKITKVSCGEYHSAAIS 126
             +YG+LG G TS      R+          A E  +I +V+CG  H+ A+S
Sbjct: 4170 GDYGRLGLGNTSNKKLPERV---------TALEGYQIGQVACGLNHTLAVS 4202

BLAST of Lag0030153 vs. ExPASy Swiss-Prot
Match: F2Z461 (E3 ISG15--protein ligase Herc6 OS=Mus musculus OX=10090 GN=Herc6 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.7e-06
Identity = 36/117 (30.77%), Postives = 52/117 (44.44%), Query Frame = 0

Query: 14  NDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEPPTTLFSRDPICLAYFG 73
           N +GQLG   ++ ++ P+ ++ L    V  VSCG   + A+                 +G
Sbjct: 49  NSWGQLGQRRDQSTERPEPIQALNDLHVDLVSCGKEHSVAVCHKGKVF---------AWG 108

Query: 74  YNEYGQLGRGVTSEGLQGVRIISAYANFIDEAPELVKITKVSCGEYHSAAISENDHI 131
               GQLG G   E       I A A         +KI +VSCG YHS A+SE+ H+
Sbjct: 109 AGSEGQLGIGEFKEISFMPTKIKALAG--------IKIIQVSCGHYHSLALSEDGHV 148

BLAST of Lag0030153 vs. ExPASy Swiss-Prot
Match: Q7ZZC8 (Serine/threonine-protein kinase Nek9 OS=Xenopus laevis OX=8355 GN=nek9 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-05
Identity = 38/116 (32.76%), Postives = 57/116 (49.14%), Query Frame = 0

Query: 17  GQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEPPTTLFSRDPICLAYFGYNE 76
           GQLG G     ++PK V++LQ K V+ VSCG+  T  IT         D   L  FG + 
Sbjct: 386 GQLGHGDRASYRQPKHVEKLQGKSVQKVSCGSDFTVCIT---------DEGQLYSFGSDY 445

Query: 77  YGQLG--RGVTSEGLQGVRIISAYANFIDEAPELVKITKVSCGEYHSAAISENDHI 131
           YG LG  +   SE L+ + +     +F    P    + +VSCG+ H  A++ +  +
Sbjct: 446 YGCLGVNQSAGSEVLEPLLV-----DFFLNEP----VDQVSCGDSHIMALTRSKSV 483

BLAST of Lag0030153 vs. ExPASy Swiss-Prot
Match: Q9FN03 (Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana OX=3702 GN=UVR8 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.3e-05
Identity = 36/119 (30.25%), Postives = 56/119 (47.06%), Query Frame = 0

Query: 7   QVKLSSANDFGQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEPPTTLFSRDP 66
           +V+    N  GQLG G  E S  P+K++  +   +K V+ GA  TAA+TE          
Sbjct: 140 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGD------- 199

Query: 67  ICLAYFGYNEYGQLGRGVTSEGLQGVRIISAYANFIDEAPELVKITKVSCGEYHSAAIS 126
             L  +G+  YG LG G  ++ L   R+ S             K++ V+CG  H+ ++S
Sbjct: 200 --LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE---------KMSMVACGWRHTISVS 240

BLAST of Lag0030153 vs. ExPASy Swiss-Prot
Match: Q8TD19 (Serine/threonine-protein kinase Nek9 OS=Homo sapiens OX=9606 GN=NEK9 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 7.4e-05
Identity = 34/115 (29.57%), Postives = 54/115 (46.96%), Query Frame = 0

Query: 17  GQLGDGTEEKSKEPKKVKQLQAKFVKSVSCGAHCTAAITEPPTTLFSRDPICLAYFGYNE 76
           GQLG G +   ++PK V++LQ K ++ VSCG   T  +T         D   L  FG + 
Sbjct: 404 GQLGHGDKASYRQPKHVEKLQGKAIRQVSCGDDFTVCVT---------DEGQLYAFGSDY 463

Query: 77  YGQLGRGVTSEGLQGVRIIS-AYANFIDEAPELVKITKVSCGEYHSAAISENDHI 131
           YG +G     + + G  ++     NF    P    + +VSCG+ H   ++ N  +
Sbjct: 464 YGCMG----VDKVAGPEVLEPMQLNFFLSNP----VEQVSCGDNHVVVLTRNKEV 501

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6602541.16.8e-4059.88Ultraviolet-B receptor UVR8, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7033219.16.8e-4059.88RCC1 and BTB domain-containing protein 2, partial [Cucurbita argyrosperma subsp.... [more]
XP_023554245.16.8e-4059.88ultraviolet-B receptor UVR8 [Cucurbita pepo subsp. pepo] >XP_023554254.1 ultravi... [more]
XP_022954542.16.8e-4059.88ultraviolet-B receptor UVR8 [Cucurbita moschata][more]
XP_022990753.18.9e-4059.88ultraviolet-B receptor UVR8 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q157516.7e-0630.63Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens OX=9606 GN=HERC1 PE=1... [more]
F2Z4618.7e-0630.77E3 ISG15--protein ligase Herc6 OS=Mus musculus OX=10090 GN=Herc6 PE=2 SV=1[more]
Q7ZZC82.5e-0532.76Serine/threonine-protein kinase Nek9 OS=Xenopus laevis OX=8355 GN=nek9 PE=2 SV=1[more]
Q9FN034.3e-0530.25Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana OX=3702 GN=UVR8 PE=1 SV=1[more]
Q8TD197.4e-0529.57Serine/threonine-protein kinase Nek9 OS=Homo sapiens OX=9606 GN=NEK9 PE=1 SV=2[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000408Regulator of chromosome condensation, RCC1PFAMPF00415RCC1coord: 72..124
e-value: 3.0E-7
score: 30.9
coord: 14..54
e-value: 1.5E-8
score: 35.1
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 114..124
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 67..127
score: 10.4036
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 6..57
score: 10.283
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3D2.130.10.30coord: 4..136
e-value: 2.1E-22
score: 81.6
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 14..129
NoneNo IPR availablePANTHERPTHR45622UBIQUITIN-PROTEIN LIGASE E3A-RELATEDcoord: 14..58
NoneNo IPR availablePANTHERPTHR45622:SF14REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEINcoord: 14..58
NoneNo IPR availablePANTHERPTHR45622UBIQUITIN-PROTEIN LIGASE E3A-RELATEDcoord: 69..128
NoneNo IPR availablePANTHERPTHR45622:SF14REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEINcoord: 69..128

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0030153.1Lag0030153.1mRNA