Lag0030151 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0030151
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptiontranscription factor MYB59-like
Locationchr8: 44966207 .. 44967220 (+)
RNA-Seq ExpressionLag0030151
SyntenyLag0030151
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCACAAGAAAAAGAATGGAGGAAGGGACCTTGGACTCCTGAGGAAGACAAGTTGTTGTCTGAATATGTGAAGGTTCATGGAGAAGGAAGATGGACTTCTGTTGCCACTGGTTCAGGTAAAAGTTCTAGCTATCTAGCTTTTGAACCAAGTGTTTTCTTTGAAAATTTAGGAGATTTGTTTGGTTCATGGGTCAACGTGAATGATCGGATTTATACTTCAGTTTTTTTTTAGTTCAACAATATGTGAGACGATGGAGATTTGAACCTTCTCCAATGACCATAAAATTATAATATAATATCTTAATTACCAATTGAATTTGTGCTCAGGTTGGTTCAAATGGCCAGGTCGAGGAAGTTAGTTGGATTTTTATGTGAATATAAGGTTTTCTAAAGCTCGTTAGATTTATGCAATTTATGATTTTCTCGTGATTTTATAAAGCTTGGAAAGTGAAAATAATAAGATCGATGTCAAACGTATACTCCCAGTTTTGTAGTTCTAAACTATACAAACTTAACTCTTGCAAAAGCTAAACACAACCTCTTTTTAAGGTGCAAGAGAATCAATACCCTAAATTAGAAGATTAAAGTTAACATGTAAATTAGTTAATTAATATCATGGTTAGAATTTGAATACGTATGTTTTTTTCTTTGTAAGCTTAACAAAAGAGAGATATAGTATGTCAACTTTTAAACAAAAGGAAAATAATAGGTGTCACATATACATCTACTAAACTATGTTTGATTTACATATATCTTAGGATCATAATACGACTTTAAAAAAAAATAGGATAGTATGCTAAATCACATCATCAAACTGGAAAGGTAAATATTAATCTTTTAAATGGTAACTAATTAAGTTGGGTTATTTTTTATAGGTTTGAATCGAACTGGAAAAAGTTGTAGATTGAGATGGGTGAATTATCTTAGACCCGGGCTTAAGAGAGGTCATCTCACTCCTCAAGAGGAAGGCATTATCATAGAACTTCATGCTCTTTGGGGCAACAAGTAA

mRNA sequence

ATGGATTCACAAGAAAAAGAATGGAGGAAGGGACCTTGGACTCCTGAGGAAGACAAGTTGTTGTCTGAATATGTGAAGGTTCATGGAGAAGGAAGATGGACTTCTGTTGCCACTGGTTCAGGTTTGAATCGAACTGGAAAAAGTTGTAGATTGAGATGGGTGAATTATCTTAGACCCGGGCTTAAGAGAGGTCATCTCACTCCTCAAGAGGAAGGCATTATCATAGAACTTCATGCTCTTTGGGGCAACAAGTAA

Coding sequence (CDS)

ATGGATTCACAAGAAAAAGAATGGAGGAAGGGACCTTGGACTCCTGAGGAAGACAAGTTGTTGTCTGAATATGTGAAGGTTCATGGAGAAGGAAGATGGACTTCTGTTGCCACTGGTTCAGGTTTGAATCGAACTGGAAAAAGTTGTAGATTGAGATGGGTGAATTATCTTAGACCCGGGCTTAAGAGAGGTCATCTCACTCCTCAAGAGGAAGGCATTATCATAGAACTTCATGCTCTTTGGGGCAACAAGTAA

Protein sequence

MDSQEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSGLNRTGKSCRLRWVNYLRPGLKRGHLTPQEEGIIIELHALWGNK
Homology
[Close]
BLAST of Lag0030151 vs. NCBI nr
Match: XP_023554284.1 (transcription factor MYB59-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.6 bits (449), Expect = 4.6e-41
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 1  MDSQEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSGLNRTGKSCRLRWVNYLRPG 60
          MD++EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGS LNRTGKSCRLRWVNYLRPG
Sbjct: 1  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60

Query: 61 LKRGHLTPQEEGIIIELHALWGNK 85
          LKRGHLTP EEGIIIELHALWGNK
Sbjct: 61 LKRGHLTPLEEGIIIELHALWGNK 84

[Close]
BLAST of Lag0030151 vs. NCBI nr
Match: KAG6602540.1 (Transcription factor MYB59, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.6 bits (449), Expect = 4.6e-41
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 1  MDSQEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSGLNRTGKSCRLRWVNYLRPG 60
          MD++EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGS LNRTGKSCRLRWVNYLRPG
Sbjct: 1  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60

Query: 61 LKRGHLTPQEEGIIIELHALWGNK 85
          LKRGHLTP EEGIIIELHALWGNK
Sbjct: 61 LKRGHLTPLEEGIIIELHALWGNK 84

[Close]
BLAST of Lag0030151 vs. NCBI nr
Match: XP_022954581.1 (transcription factor MYB59-like [Cucurbita moschata])

HSP 1 Score: 177.6 bits (449), Expect = 4.6e-41
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 1  MDSQEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSGLNRTGKSCRLRWVNYLRPG 60
          MD++EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGS LNRTGKSCRLRWVNYLRPG
Sbjct: 1  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60

Query: 61 LKRGHLTPQEEGIIIELHALWGNK 85
          LKRGHLTP EEGIIIELHALWGNK
Sbjct: 61 LKRGHLTPLEEGIIIELHALWGNK 84

[Close]
BLAST of Lag0030151 vs. NCBI nr
Match: XP_022990755.1 (transcription factor MYB59-like [Cucurbita maxima])

HSP 1 Score: 177.2 bits (448), Expect = 6.0e-41
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 0 

Query: 1  MDSQEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSGLNRTGKSCRLRWVNYLRPG 60
          MD++EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGS LNRTGKSCRLRWVNYLRPG
Sbjct: 1  MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60

Query: 61 LKRGHLTPQEEGIIIELHALWGNK 85
          LKRGHLTP EEGI+IELHALWGNK
Sbjct: 61 LKRGHLTPLEEGIVIELHALWGNK 84

[Close]
BLAST of Lag0030151 vs. NCBI nr
Match: KAA0039423.1 (transcription factor MYB59-like [Cucumis melo var. makuwa] >TYK00611.1 transcription factor MYB59-like [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 4.8e-38
Identity = 75/81 (92.59%), Postives = 78/81 (96.30%), Query Frame = 0 

Query: 4  QEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSGLNRTGKSCRLRWVNYLRPGLKR 63
          +E+EWRKGPWT EEDKLL EYVKVHGEGRW+SVA GSGLNRTGKSCRLRWVNYLRPGLKR
Sbjct: 5  EEQEWRKGPWTVEEDKLLCEYVKVHGEGRWSSVAKGSGLNRTGKSCRLRWVNYLRPGLKR 64

Query: 64 GHLTPQEEGIIIELHALWGNK 85
          GHLTPQEEGIIIELHALWGNK
Sbjct: 65 GHLTPQEEGIIIELHALWGNK 85

[Close]
BLAST of Lag0030151 vs. ExPASy Swiss-Prot
Match: Q10MB4 (Transcription factor MYB2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB2 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-27
Identity = 50/76 (65.79%), Postives = 63/76 (82.89%), Query Frame = 0 

Query: 9  RKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSGLNRTGKSCRLRWVNYLRPGLKRGHLTP 68
          R+GPWT EED LL  Y+  HGEGRW S+A  +GL RTGKSCRLRW+NYLRP L+RG++TP
Sbjct: 21 RRGPWTVEEDLLLVNYIAAHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDLRRGNITP 80

Query: 69 QEEGIIIELHALWGNK 85
          QE+ +I+ELH+ WGN+
Sbjct: 81 QEQLLILELHSRWGNR 96

[Close]
BLAST of Lag0030151 vs. ExPASy Swiss-Prot
Match: Q4JL84 (Transcription factor MYB59 OS=Arabidopsis thaliana OX=3702 GN=MYB59 PE=2 SV=2)

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-27
Identity = 53/80 (66.25%), Postives = 65/80 (81.25%), Query Frame = 0 

Query: 5  EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSGLNRTGKSCRLRWVNYLRPGLKRG 64
          ++E+RKGPWT +ED LL  +V + G+ RW  VA  SGLNRTGKSCRLRWVNYL PGLKRG
Sbjct: 5  QEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRG 64

Query: 65 HLTPQEEGIIIELHALWGNK 85
           +TPQEE +++ELHA WGN+
Sbjct: 65 KMTPQEERLVLELHAKWGNR 84

[Close]
BLAST of Lag0030151 vs. ExPASy Swiss-Prot
Match: E0CJS3 (MYB-like transcription factor EOBII OS=Petunia hybrida OX=4102 GN=EOBII PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 8.8e-27
Identity = 51/83 (61.45%), Postives = 67/83 (80.72%), Query Frame = 0 

Query: 2  DSQEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSGLNRTGKSCRLRWVNYLRPGL 61
          +SQ+ E RKGPWT EED +L  Y+  HGEG W S+A  +GL RTGKSCRLRW+NYLRP +
Sbjct: 7  NSQDAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDV 66

Query: 62 KRGHLTPQEEGIIIELHALWGNK 85
          +RG++TP+E+ +I+ELHA WGN+
Sbjct: 67 RRGNITPEEQLLIMELHAKWGNR 89

[Close]
BLAST of Lag0030151 vs. ExPASy Swiss-Prot
Match: L7R9Z0 (MYB-like transcription factor EOBI OS=Petunia hybrida OX=4102 GN=EOBI PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-26
Identity = 51/83 (61.45%), Postives = 67/83 (80.72%), Query Frame = 0 

Query: 2  DSQEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSGLNRTGKSCRLRWVNYLRPGL 61
          +SQ+ E RKGPWT EED +L  Y+  HGEG W S+A  +GL RTGKSCRLRW+NYLRP +
Sbjct: 7  NSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDV 66

Query: 62 KRGHLTPQEEGIIIELHALWGNK 85
          +RG++TP+E+ +I+ELHA WGN+
Sbjct: 67 RRGNITPEEQLLIMELHAKWGNR 89

[Close]
BLAST of Lag0030151 vs. ExPASy Swiss-Prot
Match: P81391 (Myb-related protein 305 OS=Antirrhinum majus OX=4151 GN=MYB305 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-26
Identity = 51/83 (61.45%), Postives = 67/83 (80.72%), Query Frame = 0 

Query: 2  DSQEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSGLNRTGKSCRLRWVNYLRPGL 61
          +SQ+ E RKGPWT EED +L  Y+  HGEG W S+A  +GL RTGKSCRLRW+NYLRP +
Sbjct: 7  NSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDV 66

Query: 62 KRGHLTPQEEGIIIELHALWGNK 85
          +RG++TP+E+ +I+ELHA WGN+
Sbjct: 67 RRGNITPEEQLLIMELHAKWGNR 89

The following BLAST results are available for this feature:
BLAST of Lag0030151 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023554284.14.6e-4195.24transcription factor MYB59-like [Cucurbita pepo subsp. pepo][more]
KAG6602540.14.6e-4195.24Transcription factor MYB59, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022954581.14.6e-4195.24transcription factor MYB59-like [Cucurbita moschata][more]
XP_022990755.16.0e-4194.05transcription factor MYB59-like [Cucurbita maxima][more]
KAA0039423.14.8e-3892.59transcription factor MYB59-like [Cucumis melo var. makuwa] >TYK00611.1 transcrip... [more]
BLAST of Lag0030151 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q10MB42.3e-2765.79Transcription factor MYB2 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB2 PE=2 ... [more]
Q4JL842.3e-2766.25Transcription factor MYB59 OS=Arabidopsis thaliana OX=3702 GN=MYB59 PE=2 SV=2[more]
E0CJS38.8e-2761.45MYB-like transcription factor EOBII OS=Petunia hybrida OX=4102 GN=EOBII PE=2 SV=... [more]
L7R9Z01.1e-2661.45MYB-like transcription factor EOBI OS=Petunia hybrida OX=4102 GN=EOBI PE=2 SV=1[more]
P813911.1e-2661.45Myb-related protein 305 OS=Antirrhinum majus OX=4151 GN=MYB305 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 9..59
e-value: 1.7E-16
score: 70.8
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 5..57
score: 11.625421
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 12..57
e-value: 2.9828E-12
score: 53.7334
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 10..57
e-value: 3.0E-18
score: 65.7
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 5..61
score: 25.672489
NoneNo IPR availableGENE3D1.10.10.60coord: 10..62
e-value: 1.4E-20
score: 75.0
NoneNo IPR availablePANTHERPTHR45675:SF17MYB TRANSCRIPTION FACTORcoord: 4..84
IPR044676MYB-like transcription factor EOBI/EOBII-like, plantPANTHERPTHR45675MYB TRANSCRIPTION FACTOR-RELATED-RELATEDcoord: 4..84
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 11..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0030151.1Lag0030151.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010597 green leaf volatile biosynthetic process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0000976 transcription cis-regulatory region binding
molecular_function GO:0043565 sequence-specific DNA binding