Lag0030141 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0030141
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr8: 44887677 .. 44888018 (+)
RNA-Seq ExpressionLag0030141
SyntenyLag0030141
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCACCATCATAATCACCATTCTCCTCTCTTCCAACCATTGTTGCTGCACAGCCTCCATTCTAACCAAGGCCAACGCCACCTACCGCTGCAATGCCGCCCGCAACGGCGGATGTTTCCTCATCGCCGACGCCGAGGCGAGGGTGGAGATGATTCTAGATACCCACATGGGGCGGTTACTACCTTTCGCTGGTAGTGGGTCAGCCATAACAGACCCAACCAACAACCCTAGTGTGCAGGCTTGTGGTAACGGCGCTGGAAACCCTAGCGGAGACTGCAGTGGTGACCCCACTAATTCAAATGCCTGCCCAATATACCAGGGCCCCGATGCCTGCCATTAG

mRNA sequence

ATGGCCACCATCATAATCACCATTCTCCTCTCTTCCAACCATTGTTGCTGCACAGCCTCCATTCTAACCAAGGCCAACGCCACCTACCGCTGCAATGCCGCCCGCAACGGCGGATGTTTCCTCATCGCCGACGCCGAGGCGAGGGTGGAGATGATTCTAGATACCCACATGGGGCGGTTACTACCTTTCGCTGGTAGTGGGTCAGCCATAACAGACCCAACCAACAACCCTAGTGTGCAGGCTTGTGGTAACGGCGCTGGAAACCCTAGCGGAGACTGCAGTGGTGACCCCACTAATTCAAATGCCTGCCCAATATACCAGGGCCCCGATGCCTGCCATTAG

Coding sequence (CDS)

ATGGCCACCATCATAATCACCATTCTCCTCTCTTCCAACCATTGTTGCTGCACAGCCTCCATTCTAACCAAGGCCAACGCCACCTACCGCTGCAATGCCGCCCGCAACGGCGGATGTTTCCTCATCGCCGACGCCGAGGCGAGGGTGGAGATGATTCTAGATACCCACATGGGGCGGTTACTACCTTTCGCTGGTAGTGGGTCAGCCATAACAGACCCAACCAACAACCCTAGTGTGCAGGCTTGTGGTAACGGCGCTGGAAACCCTAGCGGAGACTGCAGTGGTGACCCCACTAATTCAAATGCCTGCCCAATATACCAGGGCCCCGATGCCTGCCATTAG

Protein sequence

MATIIITILLSSNHCCCTASILTKANATYRCNAARNGGCFLIADAEARVEMILDTHMGRLLPFAGSGSAITDPTNNPSVQACGNGAGNPSGDCSGDPTNSNACPIYQGPDACH
Homology
BLAST of Lag0030141 vs. NCBI nr
Match: KAG6578548.1 (hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 45/112 (40.18%), Postives = 59/112 (52.68%), Query Frame = 0

Query: 1   MATIIITILLSSNHCCCTASILTKANATYRCNAARNGGCFLIADAEARVEMILDTHMGRL 60
           +A +++TI+L S++    AS L +ANATY                E  VE+++   + R 
Sbjct: 12  VAALMVTIILCSSN-SSRASSLGRANATY---------------GEVEVELLVRREIARF 71

Query: 61  LPFAGSGSAITDPTNNPSVQACGNGAGNPSGDCSGDPTNSNACPIYQGPDAC 113
           L F       TD T NP V++CGNG GNP GDCSG PTN   C  Y G  AC
Sbjct: 72  LNFKNM-KVYTDKTQNPFVKSCGNGPGNPMGDCSGSPTNKKHCNSYAGASAC 106

BLAST of Lag0030141 vs. NCBI nr
Match: KAA0039430.1 (hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa] >TYK00619.1 hypothetical protein E5676_scaffold169G002390 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 43/109 (39.45%), Postives = 55/109 (50.46%), Query Frame = 0

Query: 4   IIITILLSSNHCCCTASILTKANATYRCNAARNGGCFLIADAEARVEMILDTHMGRLLPF 63
           ++ITI  SS+   C  S+L KANATY              D     E+++   + R L F
Sbjct: 17  MLITIFCSSH--SCRGSVLIKANATY--------------DVVMTEELLIYPDINRYLMF 76

Query: 64  AGSGSAITDPTNNPSVQACGNGAGNPSGDCSGDPTNSNACPIYQGPDAC 113
            G   A T  TN+ +V ACGNGAGN    CSG  +N   C  Y+GP AC
Sbjct: 77  NGV-DAKTGKTNDKNVVACGNGAGNSFAGCSGSTSNKKKCNAYKGPKAC 108

BLAST of Lag0030141 vs. NCBI nr
Match: KGN52519.1 (hypothetical protein Csa_008872 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 38/112 (33.93%), Postives = 58/112 (51.79%), Query Frame = 0

Query: 1   MATIIITILLSSNHCCCTASILTKANATYRCNAARNGGCFLIADAEARVEMILDTHMGRL 60
           +  ++++I + S+   C  SIL KANAT                +    E+I+   + R 
Sbjct: 13  VVVVVMSITILSSSYSCRGSILMKANAT--------------LGSVMTTELIIKHDITRY 72

Query: 61  LPFAGSGSAITDPTNNPSVQACGNGAGNPSGDCSGDPTNSNACPIYQGPDAC 113
           L F G+ +A+T  T +P++  CGNGAGN    C G+  N+  C  YQGP+AC
Sbjct: 73  LIFKGA-TAVTGATADPNIVTCGNGAGNTFSGCGGNANNTQQCNAYQGPNAC 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6578548.11.4e-0840.18hypothetical protein SDJN03_22996, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0039430.11.1e-0539.45hypothetical protein E6C27_scaffold64G002370 [Cucumis melo var. makuwa] >TYK0061... [more]
KGN52519.11.9e-0533.93hypothetical protein Csa_008872 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0030141.1Lag0030141.1mRNA