Lag0030138 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0030138
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein SPIRAL1-like 3
Location	chr8: 44874967 .. 44876046 (+)
RNA-Seq Expression	Lag0030138
Synteny	Lag0030138

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGTGGAGTTAGCAGCGGCGGTGGACAGAGCTCCTTGAACTACCTGTTTGGAGGTGGAGAGCCAGCCAACAATGTGCAAGCTTCTCAGAAACCCAATGGATCTTCTCAGCCTACCTCTTCTACCTCGCAACCTACTGATAAGAAGATACCTGCTGGCATTCCAGGGAATCTTACTAACAATTATTTACGAGCGGACGGACAGAACTGTGGCAACTTTATCACGGTATAGGCTCCTTGTTTACTTGTTGGCTTAAAATGTTTCATATGACCTTCCACCGTCACATATATATATAACATCATAACTCAAAAAAATCATCAAGTTGTGATGCTTGGACAAGTTGAGAAATCAATCTGACTCCCTTGATTTGTGTTTTTGCTGTACTAATTGGGTTAATTGTGTTGAAGAAAATGTTTAAGTTGGGGTAATCTTTAAATAAACATGGCGAGTGATGGGCCAAAAGTGAAGGCAGAGGGATAACTGAGGCCATAGTTGGAGAGAAAAGGGCTAAAACAGTAGGCAGAGAAGAATGCTGGACCAAAAGTGAACGTACAGAGGAAATACCTGAAACATTAGGCAGAGTGATCTCATTAAACCAAAGGGTGAAGAAAGCACTGTACCAGTAACATACAGGAGCTTCTCACCTGCTAATTTCTTAAAACTTCTTCCCTGGGGATGTAACCAATAAAAATTTATGGCCATGAAAGACGTGCTCAAGAACATTAACTATTAAGATTATATATGGATGAGCCCAAATGCCGCAAAGTACTGATGAGATCCTCAATATTGCGGAAGCACATCACTAATTCACAACTAACTTGGATGGCACTTTACTGTTTTAGTTTTAAGTCTGAGAAAGATCCCATTTCCATCTGAACATCGTTTCTTTGAAGTATTCTGATTCTGAAACAATGGGAAACCATGGCTTTATTTCAATTTTGAATCCTCCATTTATTTCTAACCATTGGAGTTTAAATGTTGTGCTTGTGTTGGCAGGATCGTCCATCGACCAAGGTTCACGCTGCACCTGGTGGTGGATCTTCTCTGGATTTCCTTTTCGGAAGTGGTAGGAACTAA

mRNA sequence

ATGGGTCGTGGAGTTAGCAGCGGCGGTGGACAGAGCTCCTTGAACTACCTGTTTGGAGGTGGAGAGCCAGCCAACAATGTGCAAGCTTCTCAGAAACCCAATGGATCTTCTCAGCCTACCTCTTCTACCTCGCAACCTACTGATAAGAAGATACCTGCTGGCATTCCAGGGAATCTTACTAACAATTATTTACGAGCGGACGGACAGAACTGTGGCAACTTTATCACGGATCGTCCATCGACCAAGGTTCACGCTGCACCTGGTGGTGGATCTTCTCTGGATTTCCTTTTCGGAAGTGGTAGGAACTAA

Coding sequence (CDS)

ATGGGTCGTGGAGTTAGCAGCGGCGGTGGACAGAGCTCCTTGAACTACCTGTTTGGAGGTGGAGAGCCAGCCAACAATGTGCAAGCTTCTCAGAAACCCAATGGATCTTCTCAGCCTACCTCTTCTACCTCGCAACCTACTGATAAGAAGATACCTGCTGGCATTCCAGGGAATCTTACTAACAATTATTTACGAGCGGACGGACAGAACTGTGGCAACTTTATCACGGATCGTCCATCGACCAAGGTTCACGCTGCACCTGGTGGTGGATCTTCTCTGGATTTCCTTTTCGGAAGTGGTAGGAACTAA

Protein sequence

MGRGVSSGGGQSSLNYLFGGGEPANNVQASQKPNGSSQPTSSTSQPTDKKIPAGIPGNLTNNYLRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGSGRN

Homology

[Close]

BLAST of Lag0030138 vs. NCBI nr
Match: XP_022954496.1 (protein SPIRAL1-like 3 [Cucurbita moschata] >XP_022954504.1 protein SPIRAL1-like 3 [Cucurbita moschata] >XP_022954513.1 protein SPIRAL1-like 3 [Cucurbita moschata] >XP_022990950.1 protein SPIRAL1-like 3 [Cucurbita maxima] >XP_022990951.1 protein SPIRAL1-like 3 [Cucurbita maxima] >XP_022990952.1 protein SPIRAL1-like 3 [Cucurbita maxima] >XP_023538178.1 protein SPIRAL1-like 3 [Cucurbita pepo subsp. pepo] >XP_023538185.1 protein SPIRAL1-like 3 [Cucurbita pepo subsp. pepo] >XP_023538193.1 protein SPIRAL1-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185.7 bits (470), Expect = 2.1e-43
Identity = 93/102 (91.18%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLNYLFGGGEPANNVQASQKPNGSSQPTSSTSQPTDKKIPAGIPGNLT 60
           MGRGVSSGGGQSSL YLFGGGEPANNVQAS+KPNGSSQPTSSTSQP DK IPAGIPGN T
Sbjct: 1   MGRGVSSGGGQSSLGYLFGGGEPANNVQASKKPNGSSQPTSSTSQPADKHIPAGIPGNHT 60

Query: 61  NNYLRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGSGRN 103
           NNY RADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG+G++
Sbjct: 61  NNYHRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGKS 102

[Close]

BLAST of Lag0030138 vs. NCBI nr
Match: KAG6602534.1 (putative methylesterase 11, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 185.7 bits (470), Expect = 2.1e-43
Identity = 93/102 (91.18%), Postives = 97/102 (95.10%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLNYLFGGGEPANNVQASQKPNGSSQPTSSTSQPTDKKIPAGIPGNLT 60
           MGRGVSSGGGQSSL YLFGGGEPANNVQAS+KPNGSSQPTSSTSQP DK IPAGIPGN T
Sbjct: 390 MGRGVSSGGGQSSLGYLFGGGEPANNVQASKKPNGSSQPTSSTSQPADKHIPAGIPGNHT 449

Query: 61  NNYLRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGSGRN 103
           NNY RADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG+G++
Sbjct: 450 NNYHRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGKS 491

[Close]

BLAST of Lag0030138 vs. NCBI nr
Match: KAG7033210.1 (Protein SPIRAL1-like 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.6 bits (462), Expect = 1.7e-42
Identity = 92/102 (90.20%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLNYLFGGGEPANNVQASQKPNGSSQPTSSTSQPTDKKIPAGIPGNLT 60
           MGRGVSSGGGQSSL YLFGGGEPANNVQAS+K NGSSQPTSSTSQP DK IPAGIPGN T
Sbjct: 1   MGRGVSSGGGQSSLGYLFGGGEPANNVQASKKANGSSQPTSSTSQPADKHIPAGIPGNHT 60

Query: 61  NNYLRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGSGRN 103
           NNY RADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG+G++
Sbjct: 61  NNYHRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGKS 102

[Close]

BLAST of Lag0030138 vs. NCBI nr
Match: XP_022134514.1 (protein SPIRAL1-like 3 [Momordica charantia] >XP_022134516.1 protein SPIRAL1-like 3 [Momordica charantia])

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 93/106 (87.74%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLNYLFGGGEPANNVQASQKPNGSSQPTSSTSQPTDKKI----PAGIP 60
           MGRGVSSGGGQSSL YLFGGGEPANNVQASQKPNGSSQPTSST+Q TDK I    PAGIP
Sbjct: 1   MGRGVSSGGGQSSLGYLFGGGEPANNVQASQKPNGSSQPTSSTAQATDKNIPAGVPAGIP 60

Query: 61  GNLTNNYLRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGSGRN 103
            N TNNY RADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG+GR+
Sbjct: 61  ANCTNNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 106

[Close]

BLAST of Lag0030138 vs. NCBI nr
Match: XP_038889735.1 (protein SPIRAL1-like 1 [Benincasa hispida])

HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36
Identity = 84/102 (82.35%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLNYLFGGGEPANNVQASQKPNGSSQPTSSTSQPTDKKIPAGIPGNLT 60
           M RGVSSGGGQSSL YLFG GEPAN+VQ SQK  GSSQ  +STS  TDK+ PAGIPG+LT
Sbjct: 1   MSRGVSSGGGQSSLGYLFGNGEPANDVQPSQKSYGSSQLVASTSPLTDKQTPAGIPGHLT 60

Query: 61  NNYLRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGSGRN 103
           NNY RADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG+GR+
Sbjct: 61  NNYYRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGNGRS 102

[Close]

BLAST of Lag0030138 vs. ExPASy Swiss-Prot
Match: Q2QQ99 (Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0502000 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.8e-27
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLNYLFGGGEPANNVQASQKPNGSSQPTSSTSQPTDKKIPAGIPGNLT 60
           MGRGVSSGGGQSSL YLFGGGE     ++++KP    +P  S+S    K+IPAGI  +  
Sbjct: 1   MGRGVSSGGGQSSLGYLFGGGEAP---KSAEKPAPVQKPAPSSSAEKLKEIPAGIQSSKA 60

Query: 61  NNYLRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGSGRN 103
           NNY+RA+GQNCGNF+TDRPSTKV AAPGGGSSLD+LF   ++
Sbjct: 61  NNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLFSGNKD 99

[Close]

BLAST of Lag0030138 vs. ExPASy Swiss-Prot
Match: B3H4F1 (Protein SPIRAL1-like 1 OS=Arabidopsis thaliana OX=3702 GN=SP1L1 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-25
Identity = 66/110 (60.00%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLNYLFGGGE-PANNVQASQKPNGSSQPTSSTSQP---------TDKK 60
           MGRGVS GGGQSSL YLFG GE P   +  +  P+  + P S+   P           K+
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGEAPKPAINNAPAPSSETLPISADPSPKHVAAQTVNVTKQ 60

Query: 61  IPAGIPGNLTNNYLRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGSG 101
           IPAGI  + TNNY+RADGQN GNF+TDRPSTKVHAAPGGGSSLD+LFG G
Sbjct: 61  IPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGG 110

[Close]

BLAST of Lag0030138 vs. ExPASy Swiss-Prot
Match: Q9LE54 (Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.6e-25
Identity = 63/110 (57.27%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLNYLFGGGE-----PANNVQASQKPNGSSQPT---SSTSQPTDKKIP 60
           MGRGVS+GGGQSSL YLFG GE       N   A  + +  + PT   ++ +  + K++P
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVDSIKQVP 60

Query: 61  AGIPGNLTNNYLRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGSGRN 103
           AG+  N  NNY+RA+GQN GNFITDRPSTKVH+APGGGSSLD+LFG G N
Sbjct: 61  AGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGGGSN 110

[Close]

BLAST of Lag0030138 vs. ExPASy Swiss-Prot
Match: Q2R0W8 (Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0629400 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-23
Identity = 63/110 (57.27%), Postives = 70/110 (63.64%), Query Frame = 0


Query: 2   GRGVSSGGGQSSLNYLFGGGEPANNVQASQKPNGSSQPT-------------SSTSQPTD 61
           GRGVSSGGGQSSL YLFGGGE A   +A        + T             S ++    
Sbjct: 4   GRGVSSGGGQSSLGYLFGGGETAPAAKAKPAAAAEKETTPAPVKKAAVAAAASPSAAEKM 63

Query: 62  KKIPAGIPGNLTNNYLRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFG 99
           K+IPAGI     NNY RA GQNCGNF+TDRPSTKVHAAPGGGSSL +LFG
Sbjct: 64  KEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFG 113

[Close]

BLAST of Lag0030138 vs. ExPASy Swiss-Prot
Match: Q9SJW3 (Protein SPIRAL1 OS=Arabidopsis thaliana OX=3702 GN=SPR1 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.3e-21
Identity = 66/120 (55.00%), Postives = 79/120 (65.83%), Query Frame = 0


Query: 1   MGRGVSSGGGQSSLNYLFGGGEPANNVQASQKP------NGSSQP----------TSSTS 60
           MGRG S GGGQSSL+YLFGG  PA     + +P      NG + P          T++TS
Sbjct: 1   MGRGNSCGGGQSSLDYLFGGDAPAPKPVPAPRPAPTESNNGPAPPVTAVTATALTTATTS 60

Query: 61  -QPTD--KKIPAGIPGNLTNNYLRADGQNCGNFITDRPSTKVHAAPGGGSSLDFLFGSGR 102
            +P +  K+IPAGI     NNY RA+GQN GNF+TDRPSTKVHAAPGGGSSLD+LF  G+
Sbjct: 61  VEPAELNKQIPAGIK-TPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFTGGK 119

The following BLAST results are available for this feature:

BLAST of Lag0030138 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022954496.1	2.1e-43	91.18	protein SPIRAL1-like 3 [Cucurbita moschata] >XP_022954504.1 protein SPIRAL1-like...	[more]
KAG6602534.1	2.1e-43	91.18	putative methylesterase 11, chloroplastic, partial [Cucurbita argyrosperma subsp...	[more]
KAG7033210.1	1.7e-42	90.20	Protein SPIRAL1-like 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022134514.1	1.1e-41	87.74	protein SPIRAL1-like 3 [Momordica charantia] >XP_022134516.1 protein SPIRAL1-lik...	[more]
XP_038889735.1	1.4e-36	82.35	protein SPIRAL1-like 1 [Benincasa hispida]	[more]

BLAST of Lag0030138 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QQ99	4.8e-27	62.75	Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0502000 ...	[more]
B3H4F1	1.2e-25	60.00	Protein SPIRAL1-like 1 OS=Arabidopsis thaliana OX=3702 GN=SP1L1 PE=2 SV=1	[more]
Q9LE54	2.6e-25	57.27	Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1	[more]
Q2R0W8	1.4e-23	57.27	Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0629400 ...	[more]
Q9SJW3	2.3e-21	55.00	Protein SPIRAL1 OS=Arabidopsis thaliana OX=3702 GN=SPR1 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..49
None	No IPR available	PANTHER	PTHR33403:SF31	PROTEIN SPIRAL1-LIKE 1	coord: 1..99
IPR039613	Protein SPIRAL1-like	PANTHER	PTHR33403	SPR1	coord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0030138.1	Lag0030138.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043622	cortical microtubule organization
cellular_component	GO:0010005	cortical microtubule, transverse to long axis