Lag0030046 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0030046
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr8: 44057098 .. 44057746 (+)
RNA-Seq Expression	Lag0030046
Synteny	Lag0030046

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGTTTTCTTGCTCCCTGTTTTTCATTGTTTTCCTCCTTTTCTCAGGTTGGTCTTTTTAGATATCTCTTCTTTTTGTTAATCAAAATTTTAGATATCTCTATGTTTGGTCTTCAAAGTTATTGGATATGAATAATTTAAAAATCATAGCTCTATATTTAATTTATTTATTCGAATATGTTGACGTTTATGTTTGACTAAATGTTTTAACCAATGAGTTACACTACTTATGTTAGCAATAGAGGCTCTCAATAACATGGATGATCTCTTAACATTAAAATAATCTTTATATCAATTACCAAATCTACTTCTCAAATAATAATAATAATAACAATAAATTACCAAATCTATCCATGCATTCATGATTTTCAAATTATGTTTTGAAAATCATAAAATTAAACTCGTTCTCTAACAAATCATCGATGATGTATGAGATATTGAATATTTTTGCTTGCAGCTGTATCGATGATGCATCAAGGAGCTGCAACACAATGTGTGGAGAAGTTGTACGAAGGATGTCTGGCAAAAGAGTGCGAGCAAAAGTGTCAACAGAAGGATCCTAAATTATCATCTGAATGCGTTGCAATTCCTCCAATTCCCTTTCACTATGTTTGTTATTGCATCTCCAATTGCGCTGGCAATTGA

mRNA sequence

ATGGCAAAGTTTTCTTGCTCCCTGTTTTTCATTGTTTTCCTCCTTTTCTCAGCTGTATCGATGATGCATCAAGGAGCTGCAACACAATGTGTGGAGAAGTTGTACGAAGGATGTCTGGCAAAAGAGTGCGAGCAAAAGTGTCAACAGAAGGATCCTAAATTATCATCTGAATGCGTTGCAATTCCTCCAATTCCCTTTCACTATGTTTGTTATTGCATCTCCAATTGCGCTGGCAATTGA

Coding sequence (CDS)

ATGGCAAAGTTTTCTTGCTCCCTGTTTTTCATTGTTTTCCTCCTTTTCTCAGCTGTATCGATGATGCATCAAGGAGCTGCAACACAATGTGTGGAGAAGTTGTACGAAGGATGTCTGGCAAAAGAGTGCGAGCAAAAGTGTCAACAGAAGGATCCTAAATTATCATCTGAATGCGTTGCAATTCCTCCAATTCCCTTTCACTATGTTTGTTATTGCATCTCCAATTGCGCTGGCAATTGA

Protein sequence

MAKFSCSLFFIVFLLFSAVSMMHQGAATQCVEKLYEGCLAKECEQKCQQKDPKLSSECVAIPPIPFHYVCYCISNCAGN

Homology

[Close]

BLAST of Lag0030046 vs. NCBI nr
Match: KGN52439.1 (hypothetical protein Csa_009048 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 2.7e-19
Identity = 51/78 (65.38%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSAVSMMHQG-AATQCVEKLYEGCLAKECEQKCQQKDPKLSSECV 60
          MAKFSCSLFFI F L SA  +M  G +AT+C  KLY+GCL K+C QKC  K P  SSECV
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWIMPNGVSATKCETKLYDGCLPKDCTQKCSDKYPNSSSECV 60

Query: 61 AIPPIPFHYVCYCISNCA 78
          A+PPIPFHY CYC  +CA
Sbjct: 61 AVPPIPFHYSCYCFYDCA 78

[Close]

BLAST of Lag0030046 vs. NCBI nr
Match: KGN52438.1 (hypothetical protein Csa_008032 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 8.8e-10
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSA--VSMMHQGAATQCVEKLYE-GCLAKECEQKCQQKDPK-LSS 60
          M++ S S FFIVFLL S   + M     A  C +KLY+ GC+A EC+Q+C  K P   SS
Sbjct: 1  MSRISSSQFFIVFLLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSS 60

Query: 61 ECVAIPPIPFHYVCYCISNCA 78
          +C+++PPIPFH  C C  NCA
Sbjct: 61 QCLSLPPIPFHNACLCFYNCA 81

[Close]

BLAST of Lag0030046 vs. NCBI nr
Match: XP_022990690.1 (putative defensin-like protein 129 [Cucurbita maxima])

HSP 1 Score: 61.2 bits (147), Expect = 4.5e-06
Identity = 32/80 (40.00%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSAVSMMHQGAATQCVEKLYE-GCLAKECEQKCQQKDPKLSSECV 60
          MAKF C L F++ +L +A+ M     A+ C E+LYE GC A  C ++C++K    + ECV
Sbjct: 1  MAKFCCPLLFLLLVLSAALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFECV 60

Query: 61 AIPPIPFHYVCYCISNCAGN 80
            P  P H  C C  +C  N
Sbjct: 61 PNPLHPPHIACLCFFDCPKN 80

[Close]

BLAST of Lag0030046 vs. NCBI nr
Match: XP_022923678.1 (putative defensin-like protein 129 [Cucurbita moschata])

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 32/80 (40.00%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSAVSMMHQGAATQCVEKLYE-GCLAKECEQKCQQKDPKLSSECV 60
          MAKF C L F++ +L  A+ M     A+ C E+LYE GC A  C ++C++K    + ECV
Sbjct: 1  MAKFCCPLLFLLLVLSVALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFECV 60

Query: 61 AIPPIPFHYVCYCISNCAGN 80
            P  P H  C C  +C  N
Sbjct: 61 PNPLHPPHVACLCFFDCPKN 80

The following BLAST results are available for this feature:

BLAST of Lag0030046 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52439.1	2.7e-19	65.38	hypothetical protein Csa_009048 [Cucumis sativus]	[more]
KGN52438.1	8.8e-10	49.38	hypothetical protein Csa_008032 [Cucumis sativus]	[more]
XP_022990690.1	4.5e-06	40.00	putative defensin-like protein 129 [Cucurbita maxima]	[more]
XP_022923678.1	1.0e-05	40.00	putative defensin-like protein 129 [Cucurbita moschata]	[more]

BLAST of Lag0030046 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	Defensin-like protein	PFAM	PF07333	SLR1-BP	coord: 22..76 e-value: 6.2E-5 score: 23.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0030046.1	Lag0030046.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044419	biological process involved in interspecies interaction between organisms