Lag0030018 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0030018
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr8: 43845092 .. 43845418 (-)
RNA-Seq ExpressionLag0030018
SyntenyLag0030018
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGATGTTCATCATATAACTGTTAATGAGGCATGGTTTGCAGTATCTCGTAGTTGGAACTTTTTTCCCAGGCACCTGGTGTTTGATAGAGAAGTTATTGCGTGGGAGGATGTGGCTGCAACTTTCCCTTGTCCTTCTTCTTCAGGAAGGCCTAATACCTTTCGTTGGACTGCAAATTTGGATGGCTCCTTTAGCACAGCTTCAGCTCGCCTCATTTGTAGCGATCTAGATAGTTCGAGTGGTTTGAATGATCAAATTCCAGTTTTTGTGCTGTCTAATCTTTGGAGAGCTAACTTTTCCAGAAAATGCAAAATTTTCCTCTAG

mRNA sequence

ATGACAGATGTTCATCATATAACTGTTAATGAGGCATGGTTTGCAGTATCTCGTAGTTGGAACTTTTTTCCCAGGCACCTGGTGTTTGATAGAGAAGTTATTGCGTGGGAGGATGTGGCTGCAACTTTCCCTTGTCCTTCTTCTTCAGGAAGGCCTAATACCTTTCGTTGGACTGCAAATTTGGATGGCTCCTTTAGCACAGCTTCAGCTCGCCTCATTTGTAGCGATCTAGATAGTTCGAGTGGTTTGAATGATCAAATTCCAGTTTTTGTGCTGTCTAATCTTTGGAGAGCTAACTTTTCCAGAAAATGCAAAATTTTCCTCTAG

Coding sequence (CDS)

ATGACAGATGTTCATCATATAACTGTTAATGAGGCATGGTTTGCAGTATCTCGTAGTTGGAACTTTTTTCCCAGGCACCTGGTGTTTGATAGAGAAGTTATTGCGTGGGAGGATGTGGCTGCAACTTTCCCTTGTCCTTCTTCTTCAGGAAGGCCTAATACCTTTCGTTGGACTGCAAATTTGGATGGCTCCTTTAGCACAGCTTCAGCTCGCCTCATTTGTAGCGATCTAGATAGTTCGAGTGGTTTGAATGATCAAATTCCAGTTTTTGTGCTGTCTAATCTTTGGAGAGCTAACTTTTCCAGAAAATGCAAAATTTTCCTCTAG

Protein sequence

MTDVHHITVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFSTASARLICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKIFL
Homology
BLAST of Lag0030018 vs. NCBI nr
Match: XP_031744692.1 (uncharacterized protein LOC116405125 [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-05
Identity = 31/101 (30.69%), Postives = 52/101 (51.49%), Query Frame = 0

Query: 8   TVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFST 67
           ++   W A    W+ +PR  +   E + WED+  + P    SG  N  RWT N +GSF+ 
Sbjct: 54  SIANMWNAEKADWDLYPRRPLRSVEEVLWEDMKVSLPPLPDSGFDNP-RWTLNNNGSFTV 113

Query: 68  ASARLICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKIFL 109
           AS +L    L++    N+     + +NLW++   ++CK F+
Sbjct: 114 ASIKL-ARPLNNQDETNED-DGEIYNNLWKSTIPKRCKFFV 151

BLAST of Lag0030018 vs. NCBI nr
Match: XP_008446987.1 (PREDICTED: uncharacterized protein LOC103489530 [Cucumis melo])

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-04
Identity = 30/102 (29.41%), Postives = 48/102 (47.06%), Query Frame = 0

Query: 7   ITVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFS 66
           I+V +AW      WN   R  + DRE   W  +    P P S+ R +   WT + + SFS
Sbjct: 406 ISVKDAWNTFDNQWNIIFRRELNDRERCKWAKILEILPTPRSNRRSSKPTWTPDSNNSFS 465

Query: 67  TASARLICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKIFL 109
            ASA+++ S     S  + +    +L  +W++    K K F+
Sbjct: 466 IASAKVLISRQLDQSPRDPRAK--LLEIIWKSTIPMKIKFFM 505

BLAST of Lag0030018 vs. NCBI nr
Match: KAA0047098.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK05060.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-04
Identity = 30/102 (29.41%), Postives = 48/102 (47.06%), Query Frame = 0

Query: 7   ITVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFS 66
           I+V +AW      WN   R  + DRE   W  +    P P S+ R +   WT + + SFS
Sbjct: 444 ISVKDAWNTFDNQWNIIFRRELNDRERCKWAKILEILPTPRSNRRSSKPTWTPDSNNSFS 503

Query: 67  TASARLICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKIFL 109
            ASA+++ S     S  + +    +L  +W++    K K F+
Sbjct: 504 IASAKVLISRQLDQSPRDPRAK--LLEIIWKSTIPMKIKFFM 543

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_031744692.12.4e-0530.69uncharacterized protein LOC116405125 [Cucumis sativus][more]
XP_008446987.14.4e-0429.41PREDICTED: uncharacterized protein LOC103489530 [Cucumis melo][more]
KAA0047098.14.4e-0429.41LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK050... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0030018.1Lag0030018.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity