Lag0029834 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029834
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr8: 42501789 .. 42502106 (+)
RNA-Seq Expression	Lag0029834
Synteny	Lag0029834

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTTCTCTTCAACAAGTCTCCGACGAGAGCGGCCGCGGCAATGCTGCTGCTAGGGCTGATTCTCTGTTCGATTCCGACCACCGCCGTCTCCTTCGGCGAGCAACTCCTCAACTTCGGTAACCTAAACAGCGTCCGATCGTCAGAGGAGGAGTATCAAGAGTTTGGGGCCGGAATGCCGATCTATAGGGTTAAAGAGAATGAACAGCCCGATCTCATAATTCCGGCCAGCATGGTTGACGCGTACACTGCACCCACAGGTGCCCCGTCGCCGTCGCCGTCGCAGTCGCCATCGCCGTCGGGAGGGGGAAATTGA

mRNA sequence

ATGGCGTTTCTCTTCAACAAGTCTCCGACGAGAGCGGCCGCGGCAATGCTGCTGCTAGGGCTGATTCTCTGTTCGATTCCGACCACCGCCGTCTCCTTCGGCGAGCAACTCCTCAACTTCGGTAACCTAAACAGCGTCCGATCGTCAGAGGAGGAGTATCAAGAGTTTGGGGCCGGAATGCCGATCTATAGGGTTAAAGAGAATGAACAGCCCGATCTCATAATTCCGGCCAGCATGGTTGACGCGTACACTGCACCCACAGGTGCCCCGTCGCCGTCGCCGTCGCAGTCGCCATCGCCGTCGGGAGGGGGAAATTGA

Coding sequence (CDS)

ATGGCGTTTCTCTTCAACAAGTCTCCGACGAGAGCGGCCGCGGCAATGCTGCTGCTAGGGCTGATTCTCTGTTCGATTCCGACCACCGCCGTCTCCTTCGGCGAGCAACTCCTCAACTTCGGTAACCTAAACAGCGTCCGATCGTCAGAGGAGGAGTATCAAGAGTTTGGGGCCGGAATGCCGATCTATAGGGTTAAAGAGAATGAACAGCCCGATCTCATAATTCCGGCCAGCATGGTTGACGCGTACACTGCACCCACAGGTGCCCCGTCGCCGTCGCCGTCGCAGTCGCCATCGCCGTCGGGAGGGGGAAATTGA

Protein sequence

MAFLFNKSPTRAAAAMLLLGLILCSIPTTAVSFGEQLLNFGNLNSVRSSEEEYQEFGAGMPIYRVKENEQPDLIIPASMVDAYTAPTGAPSPSPSQSPSPSGGGN

Homology

[Close]

BLAST of Lag0029834 vs. NCBI nr
Match: TYK05738.1 (hypothetical protein E5676_scaffold98G002250 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 4.0e-10
Identity = 52/100 (52.00%), Postives = 62/100 (62.00%), Query Frame = 0


Query: 1  MAFLFNKSPTRAAAAMLLLGLILCSI-PTTAVSFGEQLLNFGNLNSVRSSEEEYQEFGAG 60
          MA  FNK  T AAA  LL+ LILCSI  TT  +  EQLLN  N N + +S  EYQ F  G
Sbjct: 1  MAIHFNKFSTIAAA--LLIHLILCSILSTTVAASNEQLLNVANTNVITASAAEYQAFDIG 60

Query: 61 MPIYRVKEN-EQPDLIIPASMVDAYTAPTGAPSPSPSQSP 99
           P+YRVKE    PDL++  ++    +AP  APSPSPS SP
Sbjct: 61 KPLYRVKEQYHVPDLVV-ENLDSISSAPKSAPSPSPSPSP 97

[Close]

BLAST of Lag0029834 vs. NCBI nr
Match: KAG6578739.1 (hypothetical protein SDJN03_23187, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.5 bits (158), Expect = 3.2e-07
Identity = 52/118 (44.07%), Postives = 67/118 (56.78%), Query Frame = 0


Query: 1   MAFLFNKSPTRA-AAAMLLLGLILCSIPTTAVSFGEQLLNFGNLNSVRSSEEEYQEFGAG 60
           MA LFNKSP+RA  A+ LL+G+ILCSIPT A++ G      GNLN + SS  + + +  G
Sbjct: 1   MAVLFNKSPSRATVASALLVGIILCSIPTIAMAAG------GNLNGMDSSGND-KVYSVG 60

Query: 61  MPIYRVKENEQPDLIIPASM-----VDAYTAP-----------TGAPSPSPSQSPSPS 102
           MP+YRVKE+   D +    M      D  + P           T A +PSP QSPSPS
Sbjct: 61  MPLYRVKESSGDDKVFFVGMPHYKTEDEPSVPISDNTFEPSSITPASAPSPLQSPSPS 111

The following BLAST results are available for this feature:

BLAST of Lag0029834 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05738.1	4.0e-10	52.00	hypothetical protein E5676_scaffold98G002250 [Cucumis melo var. makuwa]	[more]
KAG6578739.1	3.2e-07	44.07	hypothetical protein SDJN03_23187, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0029834 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029834.1	Lag0029834.1	mRNA