Lag0029758 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029758
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H protein
Locationchr8: 41830829 .. 41831203 (+)
RNA-Seq ExpressionLag0029758
SyntenyLag0029758
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTATTGGCATTGGTTAACAGAAAAATCAAGCAAAGAGGAATTAGACTTGGCGATTATCCTAATTTGGGCTATTTGGAATGCAAGGAATAGAGCATCATCAAACAACACAAGAATTGAGGCAGATCATATCCTTGCAGCAGTCAATTTAGCGTGGAATGAGATAGAAAATCCTAACCAGAAAAAGGGGATCGAAAAGGCGAGGAACCAGGCGAGTCATGCCACTTGGGAAAAACCTCCCCCGAACAGATGGAAGCTGAATGCGGATGCTTCCTGGTACGCGAGCTCGGAGAGAGGCGGCTTAGGGTGGACGGTGCGTGACTCGAACGGGTCCTTGCTCTGCATCGGCATGCAATACACAGATAAACATTGA

mRNA sequence

ATGGACTATTGGCATTGGTTAACAGAAAAATCAAGCAAAGAGGAATTAGACTTGGCGATTATCCTAATTTGGGCTATTTGGAATGCAAGGAATAGAGCATCATCAAACAACACAAGAATTGAGGCAGATCATATCCTTGCAGCAGTCAATTTAGCGTGGAATGAGATAGAAAATCCTAACCAGAAAAAGGGGATCGAAAAGGCGAGGAACCAGGCGAGTCATGCCACTTGGGAAAAACCTCCCCCGAACAGATGGAAGCTGAATGCGGATGCTTCCTGGTACGCGAGCTCGGAGAGAGGCGGCTTAGGGTGGACGGTGCGTGACTCGAACGGGTCCTTGCTCTGCATCGGCATGCAATACACAGATAAACATTGA

Coding sequence (CDS)

ATGGACTATTGGCATTGGTTAACAGAAAAATCAAGCAAAGAGGAATTAGACTTGGCGATTATCCTAATTTGGGCTATTTGGAATGCAAGGAATAGAGCATCATCAAACAACACAAGAATTGAGGCAGATCATATCCTTGCAGCAGTCAATTTAGCGTGGAATGAGATAGAAAATCCTAACCAGAAAAAGGGGATCGAAAAGGCGAGGAACCAGGCGAGTCATGCCACTTGGGAAAAACCTCCCCCGAACAGATGGAAGCTGAATGCGGATGCTTCCTGGTACGCGAGCTCGGAGAGAGGCGGCTTAGGGTGGACGGTGCGTGACTCGAACGGGTCCTTGCTCTGCATCGGCATGCAATACACAGATAAACATTGA

Protein sequence

MDYWHWLTEKSSKEELDLAIILIWAIWNARNRASSNNTRIEADHILAAVNLAWNEIENPNQKKGIEKARNQASHATWEKPPPNRWKLNADASWYASSERGGLGWTVRDSNGSLLCIGMQYTDKH
Homology
BLAST of Lag0029758 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-10
Identity = 38/123 (30.89%), Postives = 58/123 (47.15%), Query Frame = 0

Query: 2   DYWHWLTEKSSKEELDLAIILIWAIWNARNRASSNNTRIEADHILAA-----VNLAWNEI 61
           +YW WL +K+ +EE   ++I+   IW  RN++       E   I  A     +N A  + 
Sbjct: 173 EYWEWLMDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAIDRYIINSAGQDT 232

Query: 62  ENPNQKKGIEKAR--NQASHATWEKPPPNRWKLNADASWYASSERGGLGWTVRDSNGSLL 118
               + K     R     + A W+ P  N WKLN DA+W A +   G+GW +RD  G ++
Sbjct: 233 NLKRKSKDFHPIRRIGDNTRARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVI 292

BLAST of Lag0029758 vs. NCBI nr
Match: XP_022154991.1 (uncharacterized protein LOC111022134 isoform X2 [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-10
Identity = 38/123 (30.89%), Postives = 58/123 (47.15%), Query Frame = 0

Query: 2   DYWHWLTEKSSKEELDLAIILIWAIWNARNRASSNNTRIEADHILAA-----VNLAWNEI 61
           +YW WL +K+ +EE   ++I+   IW  RN++       E   I  A     +N A  + 
Sbjct: 138 EYWEWLMDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAIDRYIINSAGQDT 197

Query: 62  ENPNQKKGIEKAR--NQASHATWEKPPPNRWKLNADASWYASSERGGLGWTVRDSNGSLL 118
               + K     R     + A W+ P  N WKLN DA+W A +   G+GW +RD  G ++
Sbjct: 198 NLKRKSKDFHPIRRIGDNTRARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVI 257

BLAST of Lag0029758 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-09
Identity = 39/129 (30.23%), Postives = 59/129 (45.74%), Query Frame = 0

Query: 2   DYWHWLTEKSSKEELDLAIILIWAIWNARNRASSNNTRIEADHILAAVNLAWN------- 61
           D W+WL    S EE+  ++++ W IW +RNR+      I+   +  ++ L  N       
Sbjct: 17  DSWNWLVNMLSDEEVATSMVIAWQIWESRNRSIFRGETIDEQQLDRSIVLFINSNIDKGT 76

Query: 62  ---EIENPNQKKG-IEKARNQAS--HATWEKPPPNRWKLNADASWYASSERGGLGWTVRD 118
              +     Q  G + + R   +     W  PP N WKLN DASW    E GG+GW + D
Sbjct: 77  CISQTRRSQQNDGYLPRGRENLNMLGVRWSAPPTNCWKLNTDASWSEEREVGGIGWILCD 136

BLAST of Lag0029758 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-08
Identity = 34/116 (29.31%), Postives = 57/116 (49.14%), Query Frame = 0

Query: 7   LTEKSSKEELDLAIILIWAIWNARNRASSNNTRIEADHILAAVNLAWNEIENPNQKKGIE 66
           + +K+S E+LD+ +I  W IWN RN             ++  +     E    ++     
Sbjct: 1   MLDKASDEDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSM 60

Query: 67  KARNQASHATWEKPPPNRWKLNADASWYASSERGGLGWTVRDSNGSLLCIGMQYTD 123
             +   +   WE PP + W LNADASW  S+ RGG+GW +R  +G ++  G ++ +
Sbjct: 61  LHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVE 116

BLAST of Lag0029758 vs. NCBI nr
Match: CAB4321705.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-08
Identity = 44/121 (36.36%), Postives = 61/121 (50.41%), Query Frame = 0

Query: 7   LTEKSSK---EELDLAIILIWAIWNARNRASSNNTRIEADHILAAVNLAWNEI-ENPNQK 66
           LT KSS+   E     +  +W IW ARN A     + +      AV+L  N++ E    K
Sbjct: 102 LTFKSSEHAAEAFQWFVFGLWRIWKARNMAVFKGVKADPSE---AVHLLLNQVTEYRAAK 161

Query: 67  KGIEK----ARNQASHATWEKPPPNRWKLNADASWYASSERGGLGWTVRDSNGSLLCIGM 120
             ++     A N ++   W KPPP   K+N DA+W A + RGG+GW +RD    LLC G 
Sbjct: 162 PAVQACPHLATNSSAPQNWCKPPPGFLKVNCDAAWSALASRGGVGWVIRDIFELLLCAGG 219

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022154990.16.2e-1030.89uncharacterized protein LOC111022134 isoform X1 [Momordica charantia][more]
XP_022154991.16.2e-1030.89uncharacterized protein LOC111022134 isoform X2 [Momordica charantia][more]
XP_022143317.11.8e-0930.23uncharacterized protein LOC111013216 [Momordica charantia][more]
XP_022155262.11.2e-0829.31uncharacterized protein LOC111022403 [Momordica charantia][more]
CAB4321705.12.6e-0836.36unnamed protein product [Prunus armeniaca][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029758.1Lag0029758.1mRNA