Lag0029753 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029753
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionzinc finger protein ZAT5-like
Locationchr8: 41802277 .. 41802597 (-)
RNA-Seq ExpressionLag0029753
SyntenyLag0029753
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATCAGAATCTGATACCAAAAGGGAAGAGAAACAAGCACCAAAATTTGCAGATCATGATCTCCCAAAACCCTAATTTTAGTGATCAACCAGATTCTGAGCTTCTTGGCCAATGCCATAGCTTCTTCAATTTCTCTTCATCCCCTTCTTCCGACCGTCGTCTCGACGATGACGACGACAACGACGACAACGATATGGCGTATTGTCTCATGCTTCTTGCTCGAGGCTCACCAGCTTCTCAGCCCTCTTCTTCCTTGGGAAAATTCATGGGAGCCACACAAGGACAAAATGGTAATTATCAGCCGCCATTGATTTAG

mRNA sequence

ATGGAAGATCAGAATCTGATACCAAAAGGGAAGAGAAACAAGCACCAAAATTTGCAGATCATGATCTCCCAAAACCCTAATTTTAGTGATCAACCAGATTCTGAGCTTCTTGGCCAATGCCATAGCTTCTTCAATTTCTCTTCATCCCCTTCTTCCGACCGTCGTCTCGACGATGACGACGACAACGACGACAACGATATGGCGTATTGTCTCATGCTTCTTGCTCGAGGCTCACCAGCTTCTCAGCCCTCTTCTTCCTTGGGAAAATTCATGGGAGCCACACAAGGACAAAATGGTAATTATCAGCCGCCATTGATTTAG

Coding sequence (CDS)

ATGGAAGATCAGAATCTGATACCAAAAGGGAAGAGAAACAAGCACCAAAATTTGCAGATCATGATCTCCCAAAACCCTAATTTTAGTGATCAACCAGATTCTGAGCTTCTTGGCCAATGCCATAGCTTCTTCAATTTCTCTTCATCCCCTTCTTCCGACCGTCGTCTCGACGATGACGACGACAACGACGACAACGATATGGCGTATTGTCTCATGCTTCTTGCTCGAGGCTCACCAGCTTCTCAGCCCTCTTCTTCCTTGGGAAAATTCATGGGAGCCACACAAGGACAAAATGGTAATTATCAGCCGCCATTGATTTAG

Protein sequence

MEDQNLIPKGKRNKHQNLQIMISQNPNFSDQPDSELLGQCHSFFNFSSSPSSDRRLDDDDDNDDNDMAYCLMLLARGSPASQPSSSLGKFMGATQGQNGNYQPPLI
Homology
BLAST of Lag0029753 vs. NCBI nr
Match: XP_038885865.1 (zinc finger protein ZAT5-like [Benincasa hispida])

HSP 1 Score: 88.2 bits (217), Expect = 4.6e-14
Identity = 52/83 (62.65%), Postives = 63/83 (75.90%), Query Frame = 0

Query: 23  SQNPN-FSDQPDSELLGQCHSFFNFSSSPSSD----RRLDDDDDNDDNDMAYCLMLLARG 82
           S +PN FS+ P+ ELLGQCHSF NFSSS SS+     R +DD+D+DD D+A CL+LLA+G
Sbjct: 49  SMSPNYFSELPNCELLGQCHSFINFSSSSSSNGRDGGRSNDDNDDDDEDVANCLILLAQG 108

Query: 83  SPA-SQPSSSLGKFMGATQGQNG 100
            PA SQPSSSLGKF    +GQNG
Sbjct: 109 LPANSQPSSSLGKFFRDPEGQNG 131

BLAST of Lag0029753 vs. NCBI nr
Match: XP_008456545.1 (PREDICTED: zinc finger protein ZAT5-like [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 8.5e-08
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 0

Query: 35  ELLGQCHSFFNFSSSPSSDR--RLDDDDDNDDNDMAYCLMLLARGSP-ASQPSS-SLGKF 94
           E++G+ H+F N SSS +S    R D  +DN+D DMA CL+LLA+G P ASQPSS SLGKF
Sbjct: 15  EVIGEYHTFLNLSSSSNSSNIGRDDGGNDNEDEDMANCLILLAQGEPAASQPSSFSLGKF 74

Query: 95  MGATQGQNG 100
           +G  +GQNG
Sbjct: 75  IGDPEGQNG 83

BLAST of Lag0029753 vs. NCBI nr
Match: XP_011650172.2 (zinc finger protein ZAT5 [Cucumis sativus] >KAE8652011.1 hypothetical protein Csa_006824 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-07
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 0

Query: 35  ELLGQCHSFFNFSSSPSSDRRLDDDDDNDDNDMAYCLMLLARGSP--ASQPSS-SLGKFM 94
           +++G+CHSF NFSSS +S     DD   DD DMA CL+LLA+G P  ASQPSS SLGKF 
Sbjct: 17  DVIGECHSFLNFSSSSNSSNIGRDDGGKDDEDMANCLILLAQGEPAAASQPSSYSLGKFF 76

Query: 95  GA-TQGQNG 100
               +GQNG
Sbjct: 77  RRDPEGQNG 85

BLAST of Lag0029753 vs. NCBI nr
Match: TYJ99965.1 (zinc finger protein ZAT5-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-07
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 35 ELLGQCHSFFNFSSSPSSDR--RLDDDDDNDDNDMAYCLMLLARGSP-ASQPSS-SLGKF 94
          E++G+ H+F N SSS +S    R D  +DN+D DMA CL+LLA+G P ASQPSS SLGKF
Sbjct: 15 EVIGEYHTFLNLSSSSNSSNIGRDDGGNDNEDEDMANCLILLAQGEPAASQPSSFSLGKF 74

Query: 95 MGATQGQN 99
          +G  +GQN
Sbjct: 75 IGDPEGQN 82

BLAST of Lag0029753 vs. NCBI nr
Match: KAG6578792.1 (Zinc finger protein ZAT5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 7.9e-06
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 0

Query: 25  NPNFSDQPDSELLGQCHSFFNFSSSPSSDRRLDDDDD-----NDDNDMAYCLMLLARGSP 84
           NPN   +P+SELLG+C    N SSS SS        D     ++  D+A CL+LL++G P
Sbjct: 2   NPNGFSEPNSELLGRC----NLSSSSSSIGGGGGGGDGSGGEDEQEDVAKCLILLSQGLP 61

Query: 85  ASQPSSSLGKFMGATQGQNG 100
           ASQPSSS+ KF+ A QGQNG
Sbjct: 62  ASQPSSSMVKFIEAPQGQNG 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038885865.14.6e-1462.65zinc finger protein ZAT5-like [Benincasa hispida][more]
XP_008456545.18.5e-0857.97PREDICTED: zinc finger protein ZAT5-like [Cucumis melo][more]
XP_011650172.22.5e-0757.97zinc finger protein ZAT5 [Cucumis sativus] >KAE8652011.1 hypothetical protein Cs... [more]
TYJ99965.14.2e-0757.35zinc finger protein ZAT5-like [Cucumis melo var. makuwa][more]
KAG6578792.17.9e-0650.00Zinc finger protein ZAT5, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029753.1Lag0029753.1mRNA